CSPI06G05500.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI06G05500.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 5017715 .. 5018963 (+)
Sequence length1249
RNA-Seq ExpressionCSPI06G05500.1
SyntenyCSPI06G05500.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGTCAGACTCCAATGCCCCATCCTGTGCCTTTTGTAATCCAAGGCAAATTAAGGATCTTAATTTTAGCATGTTAGGAGTCAATTTAACAAATATTGGGGCGAAGGCTAAAGTTTTAAACCCCAGGTTTAAAATTTAAATCTTAAAATCCTATCTATGGATAGGGAGAGCCTCCCAAATATCAAGGGGGTGGGGTATAAGCAAAATCCAAGTGGTGGGACCAAGATCTCGGTCATTAAAAGGGAAAAGGAAAAAGTCTCACAAAGAATATAACTGAAAACAGAACTCAAGATAATCAGAACAAAGAATTGGAAGGAGAAGGGAAACCCGCTTGAAATAAGCGCTCACAAAGGACCAAGAGAGAGAAGAAAGAAAGCAAACAGGAGATATTCGTCATAAAGTGCGAATCAATCTCCAAAATTAAGGCAAACTCGAATAAGAAGCAAGCAGACGAGCAATAGAGAATAACACAGCAAGAACAATAAGTAACAACACCAAATCAAGCAGAAGAGGAGGTTGTTAGCGAAACACATGAGAAGGACAGTAGGGAATTCATGAGAAATGGACATAAGGGATTGGTTGAATAAAACAATTAAAGTGGTAACGTAGAAAGAAACAGAAGGGAGGTAAAATCCCACAAAACCTAGATCAAGAAAACAGGAACAGGGGCAAATCCTCACACCAAGAACACAAGCATACCACAAAATTGGAAGGAAAAAAAAAAAGGAAAACCAGAAAAGGGAAGTGATGAGATAGATTAATTGAATACCTAATCAGACAACCAGAATCAAAGTGAGTCCGTTTGAGCAAATGAAAGCGGCAAGCAAAGCGAACCGAGTTGAATCGGATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

mRNA sequence

GGGGTCAGACTCCAATGCCCCATCCTGTGCCTTTTGTAATCCAAGGCAAATTAAGGATCTTAATTTTAGCATGTTAGGAGTCAATTTAACAAATATTGGGGCGAAGGCTAAAGTTTTAAACCCCAGGTTTAAAATTTAAATCTTAAAATCCTATCTATGGATAGGGAGAGCCTCCCAAATATCAAGGGGGTGGGGTATAAGCAAAATCCAAGTGGTGGGACCAAGATCTCGGTCATTAAAAGGGAAAAGGAAAAAGTCTCACAAAGAATATAACTGAAAACAGAACTCAAGATAATCAGAACAAAGAATTGGAAGGAGAAGGGAAACCCGCTTGAAATAAGCGCTCACAAAGGACCAAGAGAGAGAAGAAAGAAAGCAAACAGGAGATATTCGTCATAAAGTGCGAATCAATCTCCAAAATTAAGGCAAACTCGAATAAGAAGCAAGCAGACGAGCAATAGAGAATAACACAGCAAGAACAATAAGTAACAACACCAAATCAAGCAGAAGAGGAGGTTGTTAGCGAAACACATGAGAAGGACAGTAGGGAATTCATGAGAAATGGACATAAGGGATTGGTTGAATAAAACAATTAAAGTGGTAACGTAGAAAGAAACAGAAGGGAGGTAAAATCCCACAAAACCTAGATCAAGAAAACAGGAACAGGGGCAAATCCTCACACCAAGAACACAAGCATACCACAAAATTGGAAGGAAAAAAAAAAAGGAAAACCAGAAAAGGGAAGTGATGAGATAGATTAATTGAATACCTAATCAGACAACCAGAATCAAAGTGAGTCCGTTTGAGCAAATGAAAGCGGCAAGCAAAGCGAACCGAGTTGAATCGGATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Coding sequence (CDS)

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Protein sequence

MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLLLQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLIFDVFFSPNPNFVW*
Homology
[Close]
BLAST of CSPI06G05500.1 vs. ExPASy TrEMBL
Match: A0A0A0KEK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.4e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

[Close]
BLAST of CSPI06G05500.1 vs. NCBI nr
Match: KGN46201.1 (hypothetical protein Csa_005605 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 4.9e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

The following BLAST results are available for this feature:
BLAST of CSPI06G05500.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G05500.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEK22.4e-6999.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1[more]
BLAST of CSPI06G05500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46201.14.9e-6999.25hypothetical protein Csa_005605 [Cucumis sativus][more]
BLAST of CSPI06G05500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G05500CSPI06G05500gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G05500.1.utr5p1CSPI06G05500.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G05500.1.cds1CSPI06G05500.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G05500.1CSPI06G05500.1-proteinpolypeptide