CSPI06G05500 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05500
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 5017715 .. 5018963 (+)
RNA-Seq Expression	CSPI06G05500
Synteny	CSPI06G05500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTCAGACTCCAATGCCCCATCCTGTGCCTTTTGTAATCCAAGGCAAATTAAGGATCTTAATTTTAGCATGTTAGGAGTCAATTTAACAAATATTGGGGCGAAGGCTAAAGTTTTAAACCCCAGGTTTAAAATTTAAATCTTAAAATCCTATCTATGGATAGGGAGAGCCTCCCAAATATCAAGGGGGTGGGGTATAAGCAAAATCCAAGTGGTGGGACCAAGATCTCGGTCATTAAAAGGGAAAAGGAAAAAGTCTCACAAAGAATATAACTGAAAACAGAACTCAAGATAATCAGAACAAAGAATTGGAAGGAGAAGGGAAACCCGCTTGAAATAAGCGCTCACAAAGGACCAAGAGAGAGAAGAAAGAAAGCAAACAGGAGATATTCGTCATAAAGTGCGAATCAATCTCCAAAATTAAGGCAAACTCGAATAAGAAGCAAGCAGACGAGCAATAGAGAATAACACAGCAAGAACAATAAGTAACAACACCAAATCAAGCAGAAGAGGAGGTTGTTAGCGAAACACATGAGAAGGACAGTAGGGAATTCATGAGAAATGGACATAAGGGATTGGTTGAATAAAACAATTAAAGTGGTAACGTAGAAAGAAACAGAAGGGAGGTAAAATCCCACAAAACCTAGATCAAGAAAACAGGAACAGGGGCAAATCCTCACACCAAGAACACAAGCATACCACAAAATTGGAAGGAAAAAAAAAAAGGAAAACCAGAAAAGGGAAGTGATGAGATAGATTAATTGAATACCTAATCAGACAACCAGAATCAAAGTGAGTCCGTTTGAGCAAATGAAAGCGGCAAGCAAAGCGAACCGAGTTGAATCGGATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

mRNA sequence

GGGGTCAGACTCCAATGCCCCATCCTGTGCCTTTTGTAATCCAAGGCAAATTAAGGATCTTAATTTTAGCATGTTAGGAGTCAATTTAACAAATATTGGGGCGAAGGCTAAAGTTTTAAACCCCAGGTTTAAAATTTAAATCTTAAAATCCTATCTATGGATAGGGAGAGCCTCCCAAATATCAAGGGGGTGGGGTATAAGCAAAATCCAAGTGGTGGGACCAAGATCTCGGTCATTAAAAGGGAAAAGGAAAAAGTCTCACAAAGAATATAACTGAAAACAGAACTCAAGATAATCAGAACAAAGAATTGGAAGGAGAAGGGAAACCCGCTTGAAATAAGCGCTCACAAAGGACCAAGAGAGAGAAGAAAGAAAGCAAACAGGAGATATTCGTCATAAAGTGCGAATCAATCTCCAAAATTAAGGCAAACTCGAATAAGAAGCAAGCAGACGAGCAATAGAGAATAACACAGCAAGAACAATAAGTAACAACACCAAATCAAGCAGAAGAGGAGGTTGTTAGCGAAACACATGAGAAGGACAGTAGGGAATTCATGAGAAATGGACATAAGGGATTGGTTGAATAAAACAATTAAAGTGGTAACGTAGAAAGAAACAGAAGGGAGGTAAAATCCCACAAAACCTAGATCAAGAAAACAGGAACAGGGGCAAATCCTCACACCAAGAACACAAGCATACCACAAAATTGGAAGGAAAAAAAAAAAGGAAAACCAGAAAAGGGAAGTGATGAGATAGATTAATTGAATACCTAATCAGACAACCAGAATCAAAGTGAGTCCGTTTGAGCAAATGAAAGCGGCAAGCAAAGCGAACCGAGTTGAATCGGATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Coding sequence (CDS)

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Protein sequence

MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLLLQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLIFDVFFSPNPNFVW*

Homology

[Close]

BLAST of CSPI06G05500 vs. ExPASy TrEMBL
Match: A0A0A0KEK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.4e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

[Close]

BLAST of CSPI06G05500 vs. NCBI nr
Match: KGN46201.1 (hypothetical protein Csa_005605 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 4.9e-69
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

The following BLAST results are available for this feature:

BLAST of CSPI06G05500 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G05500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK2	2.4e-69	99.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074540 PE=4 SV=1	[more]

BLAST of CSPI06G05500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46201.1	4.9e-69	99.25	hypothetical protein Csa_005605 [Cucumis sativus]	[more]

BLAST of CSPI06G05500 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05500.1	CSPI06G05500.1	mRNA