CSPI05G13450.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G13450.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr5: 13119959 .. 13121231 (-)
Sequence length	858
RNA-Seq Expression	CSPI05G13450.1
Synteny	CSPI05G13450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGCCAGAAGGCAGAACTGAATGCGAAGGTAATACAGAACGTCATAAGTTTAAAAAAGTGGAGATGTCTGTCTTCAATGGTGAAGATCCTGATTCTTGGTTATTCTGAGCCGATAGATACTTCCAAATTCATAAATTGTTGATGCCAAGAAGGTATTGGTGACGACGATCAGTTTTGAGGGTTCAACCTTGAACTGGTACAGAGCACAAGAAGAGAGGGATAAATTTATGGATTGTTCGAACTTGAAGAAATGATTGCTGATACGATTCTAATCAGTTCGCAAAGGACCCATATGTGGCCAATTTTTTAGAATTTGGCAAGAGACTACAGTAGAGGAATATCAAAATTTGTTCGACAAATTAATGGCTCCATTATCGGATTTACAGGACAGGGTGATTGAGGAAACTTTCATGAATGGGTTGCTGTCATGGATCAAGGCTGAGGTAGATTTTTGTCGAACAACCAGATTAGCCCAGATGATGCAATTAGCTCAGTCGGTGGAGAATCGGGAGATCGTCCGGGCGTAAGTCAACCTTAAAGGATATGTTGGAGGAAAATATCCAACTTCTTTAGCCAATAGTGCTAAATCTGGAGGGAGTGCCAATTCAATTGATAATAAGAGCGACTCTACAATTCCCATGAGAACTATCACCTTAAGAGGGGTGGCTGGTGGGGAAGCTAAGAAGGAGGGGCCTAGTAAGAGATTATCTGACATGGAGTTTCGAGCTAGAAAGGAGAAGGCACTCTATTTTCGATGTAACGAAAAGTACTCCCATGACCATAAATGTAAGATGAGGGAGCAAAGAGAGCTTCGAATGTATGTTGTCACAGAGGGAAAGGAGGAATTTGAGATTGTGGAGGATATGGAGAGTGAGGAGAAAGAATTGAAAATGGTGAGGATAGATGAGGAAGACCAAGCCATTATAGAATTATCCATTAATTTTGTGGTAGGATTATCGAACCCGGGTACTATGAAGGTGAGAGGGGAGATCGAAGGCAAGGAAGTGGTGCTCTTAGTAGATTGTGGGGCTACACACAACTTTATCTTTGAAAAGTTGGTGAAGAGTTTACAGATACCGACGAAAGACACTTCTCATTATGGGGTGATTTTGGGGTCCGACACAACTATTAAGGGGAAAGGAATCTGTGAAGCCGTAGAGTTGAAAATGAATGATTGGAAGGTAGTAGCGAACTTTTTACCGTTGGAGTTAGGGGGTGTGGACGTGGTCTTAGAGATGCAGTGGCTTTACTCTCTTGGCATCACATAA

mRNA sequence

ATGAAACGCCAGAAGGCAGAACTGAATGCGAAGGACAGGGTGATTGAGGAAACTTTCATGAATGGGTTGCTGTCATGGATCAAGGCTGAGGTAGATTTTTGTCGAACAACCAGATTAGCCCAGATGATGCAATTAGCTCAGTCGGTGGAGAATCGGGAGATCGTCCGGGCTGCTAAATCTGGAGGGAGTGCCAATTCAATTGATAATAAGAGCGACTCTACAATTCCCATGAGAACTATCACCTTAAGAGGGGTGGCTGGTGGGGAAGCTAAGAAGGAGGGGCCTAGTAAGAGATTATCTGACATGGAGTTTCGAGCTAGAAAGGAGAAGGCACTCTATTTTCGATGTAACGAAAAGTACTCCCATGACCATAAATGTAAGATGAGGGAGCAAAGAGAGCTTCGAATGTATGTTGTCACAGAGGGAAAGGAGGAATTTGAGATTGTGGAGGATATGGAGAGTGAGGAGAAAGAATTGAAAATGGTGAGGATAGATGAGGAAGACCAAGCCATTATAGAATTATCCATTAATTTTGTGGTAGGATTATCGAACCCGGGTACTATGAAGGTGAGAGGGGAGATCGAAGGCAAGGAAGTGGTGCTCTTAGTAGATTGTGGGGCTACACACAACTTTATCTTTGAAAAGTTGGTGAAGAGTTTACAGATACCGACGAAAGACACTTCTCATTATGGGGTGATTTTGGGGTCCGACACAACTATTAAGGGGAAAGGAATCTGTGAAGCCGTAGAGTTGAAAATGAATGATTGGAAGGTAGTAGCGAACTTTTTACCGTTGGAGTTAGGGGGTGTGGACGTGGTCTTAGAGATGCAGTGGCTTTACTCTCTTGGCATCACATAA

Coding sequence (CDS)

ATGAAACGCCAGAAGGCAGAACTGAATGCGAAGGACAGGGTGATTGAGGAAACTTTCATGAATGGGTTGCTGTCATGGATCAAGGCTGAGGTAGATTTTTGTCGAACAACCAGATTAGCCCAGATGATGCAATTAGCTCAGTCGGTGGAGAATCGGGAGATCGTCCGGGCTGCTAAATCTGGAGGGAGTGCCAATTCAATTGATAATAAGAGCGACTCTACAATTCCCATGAGAACTATCACCTTAAGAGGGGTGGCTGGTGGGGAAGCTAAGAAGGAGGGGCCTAGTAAGAGATTATCTGACATGGAGTTTCGAGCTAGAAAGGAGAAGGCACTCTATTTTCGATGTAACGAAAAGTACTCCCATGACCATAAATGTAAGATGAGGGAGCAAAGAGAGCTTCGAATGTATGTTGTCACAGAGGGAAAGGAGGAATTTGAGATTGTGGAGGATATGGAGAGTGAGGAGAAAGAATTGAAAATGGTGAGGATAGATGAGGAAGACCAAGCCATTATAGAATTATCCATTAATTTTGTGGTAGGATTATCGAACCCGGGTACTATGAAGGTGAGAGGGGAGATCGAAGGCAAGGAAGTGGTGCTCTTAGTAGATTGTGGGGCTACACACAACTTTATCTTTGAAAAGTTGGTGAAGAGTTTACAGATACCGACGAAAGACACTTCTCATTATGGGGTGATTTTGGGGTCCGACACAACTATTAAGGGGAAAGGAATCTGTGAAGCCGTAGAGTTGAAAATGAATGATTGGAAGGTAGTAGCGAACTTTTTACCGTTGGAGTTAGGGGGTGTGGACGTGGTCTTAGAGATGCAGTGGCTTTACTCTCTTGGCATCACATAA

Protein sequence

MKRQKAELNAKDRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVRAAKSGGSANSIDNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKALYFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAIIELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGVILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT*

Homology

[Close]

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL
Match: A0A5D3DLL9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002170 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.6e-91
Identity = 177/293 (60.41%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 237 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 296

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 297 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 356

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DHKC+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 357 CFRCNEKYSADHKCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 416

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 417 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 476

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 477 ILGSGAAVQGKGVCEKLEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 528

[Close]

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL
Match: A0A5D3D5P9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00390 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.6e-91
Identity = 177/293 (60.41%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 465 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 524

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 525 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 584

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DHKC+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 585 CFRCNEKYSADHKCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 644

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 645 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 704

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 705 ILGSGAAVQGKGVCEKLEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 756

[Close]

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL
Match: A0A5A7TET8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002570 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.6e-91
Identity = 176/293 (60.07%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 237 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 296

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 297 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 356

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DH+C+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 357 CFRCNEKYSADHRCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 416

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 417 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 476

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 477 ILGSGAAVQGKGVCEKMEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 528

[Close]

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL
Match: A0A5D3BLF5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002730 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.3e-90
Identity = 175/295 (59.32%), Postives = 227/295 (76.95%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVRA-------------- 71
           +RVIE+TFMNGLL W+++EV F R   LA+MM++AQ VENREIVR               
Sbjct: 208 ERVIEDTFMNGLLPWVRSEVVFYRPKGLAEMMEVAQIVENREIVRTEAKLNGYSGGRMTG 267

Query: 72  -------AKSGGSANSIDNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEK 131
                  A SGG A   ++KS+++ P+RTITLR  A  E ++EG  KRL D EF++RKEK
Sbjct: 268 QIGSNGKATSGGVAG--ESKSNTSFPIRTITLRSSAPTENRREGTYKRLPDAEFQSRKEK 327

Query: 132 ALYFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQA 191
            L FRCNEKYS DHKC+++EQRELRM+VVTEG+EE+EIVE+ E EEKEL  + ++E+   
Sbjct: 328 GLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEE-EKEEKELGRIEVNEDITI 387

Query: 192 IIELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHY 251
           ++ELSIN VVGL++PGTMKVRG++ G+EV++L+DCGATHNF+ EKLVK L +P K+TSHY
Sbjct: 388 VVELSINSVVGLNDPGTMKVRGKLLGEEVIILIDCGATHNFVSEKLVKKLILPIKETSHY 447

Query: 252 GVILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           GVILGS   ++GKGICE +E+++N WK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 448 GVILGSGAAVQGKGICEKLEVQLNGWKIVEDFLPLELGGVDVILGMQWLYSLGVT 499

[Close]

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL
Match: A0A5A7U9J7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G002020 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 5.2e-90
Identity = 176/293 (60.07%), Postives = 221/293 (75.43%), Query Frame = 0


Query: 14  VIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR----------------- 73
           VIE+TFMNGLL W+++EV FCR   LA+MM+ AQ VENREIVR                 
Sbjct: 210 VIEDTFMNGLLPWVRSEVVFCRPKSLAEMMEAAQMVENREIVRMEAKMNGYSGGKMSGQI 269

Query: 74  ----AAKSGGSANSIDNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 133
                  SGG A  I  K +++ P+RTITLR  A  E ++EG  KRL D EF+ARKEK L
Sbjct: 270 GSNGKINSGGVAGDI--KGNTSFPIRTITLRSQASTENRREGTYKRLPDAEFQARKEKGL 329

Query: 134 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 193
            FRCNEKYS DHKC+++EQRELRM+VVTEGKEE+EIVE+ E EEKEL  + ++E+   ++
Sbjct: 330 CFRCNEKYSADHKCRLKEQRELRMFVVTEGKEEYEIVEE-EKEEKELGRIEVNEDLTTVV 389

Query: 194 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 253
           ELSIN VVGL++P TMKVRG++ G+EV++L+DCGATHNF+ EKLVK L +P K+TSHYGV
Sbjct: 390 ELSINSVVGLNDPETMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPIKETSHYGV 449

Query: 254 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKGICE +E+++N WKVV +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 450 ILGSGAAVQGKGICEKLEVQLNGWKVVEDFLPLELGGVDVILGMQWLYSLGVT 499

[Close]

BLAST of CSPI05G13450.1 vs. NCBI nr
Match: XP_031745972.1 (uncharacterized protein LOC116406393 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 1.6e-93
Identity = 184/294 (62.59%), Postives = 221/294 (75.17%), Query Frame = 0


Query: 11  KDRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-------------- 70
           +DRV+EETFMNGL  WIKAEV FC+   LA+MM  AQ VENREI+R              
Sbjct: 223 QDRVVEETFMNGLFPWIKAEVVFCKPVGLAEMMHAAQLVENREIIRKEANLNGYAKGKYP 282

Query: 71  -----AAKSGGSANSIDNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKA 130
                  +S  + N  ++K ++  P+RT+TLR  A GE KKEGP+KRL D EF+ARKEK 
Sbjct: 283 PPNSSIIRSSAAMNHSEDKGNTIFPIRTVTLR-TATGEVKKEGPTKRLPDAEFQARKEKG 342

Query: 131 LYFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAI 190
           L FRCNEKY H H+CK REQRELRMYVV E  EE+EIVE+ E +E EL  V I+ EDQAI
Sbjct: 343 LCFRCNEKYFHGHRCKGREQRELRMYVVKE-DEEYEIVEEAEWDETELNCVEINPEDQAI 402

Query: 191 IELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYG 250
           +ELSIN VVGL+NPGTMKVRG+I+ +EV++L+DCGATHNFI +K+V+ L +PTK TSHYG
Sbjct: 403 VELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYG 462

Query: 251 VILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           VILGS   +KGKGICE +EL++  WKV ANFLPLELGGVD VLEMQWLYSLG+T
Sbjct: 463 VILGSCAAVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLEMQWLYSLGVT 514

[Close]

BLAST of CSPI05G13450.1 vs. NCBI nr
Match: TYK18846.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 3.3e-91
Identity = 177/293 (60.41%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 465 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 524

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 525 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 584

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DHKC+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 585 CFRCNEKYSADHKCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 644

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 645 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 704

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 705 ILGSGAAVQGKGVCEKLEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 756

[Close]

BLAST of CSPI05G13450.1 vs. NCBI nr
Match: TYK06640.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10078.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK24527.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 3.3e-91
Identity = 177/293 (60.41%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 237 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 296

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 297 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 356

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DHKC+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 357 CFRCNEKYSADHKCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 416

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 417 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 476

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 477 ILGSGAAVQGKGVCEKLEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 528

[Close]

BLAST of CSPI05G13450.1 vs. NCBI nr
Match: KAA0039975.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 7.4e-91
Identity = 176/293 (60.07%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVR-----AAKSGG---S 71
           +RVI +TFMNGLL W+++EV FCR   LA+MM++AQ VENREI R        SGG    
Sbjct: 237 ERVILDTFMNGLLPWVRSEVFFCRPKSLAEMMEVAQMVENREIARTEAKMCGYSGGKIAG 296

Query: 72  ANSI-----------DNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEKAL 131
            NS+           DNK+++  P+RTITLR     E ++EG  KRL D EF+ARKEK L
Sbjct: 297 QNSVVGKTSTGGVAGDNKNNTVFPIRTITLRSSVPNENRREGSYKRLPDAEFQARKEKGL 356

Query: 132 YFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAII 191
            FRCNEKYS DH+C+M+EQRELRM+VVTEG+EE+EIVED E EEKEL  + I+E    ++
Sbjct: 357 CFRCNEKYSADHRCRMKEQRELRMFVVTEGREEYEIVED-EKEEKELGCMEINENLTTVV 416

Query: 192 ELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGV 251
           ELSIN VVGL++PGTMKVRG++ G+EVV+L+DCGATHNF+ EKLV+ L +P K+TSHYGV
Sbjct: 417 ELSINSVVGLNDPGTMKVRGKLLGEEVVILIDCGATHNFVSEKLVRKLSLPIKETSHYGV 476

Query: 252 ILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           ILGS   ++GKG+CE +E+++ DWK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 477 ILGSGAAVQGKGVCEKMEVQLKDWKIVEDFLPLELGGVDVILGMQWLYSLGVT 528

[Close]

BLAST of CSPI05G13450.1 vs. NCBI nr
Match: KAA0039461.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00651.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 4.8e-90
Identity = 175/295 (59.32%), Postives = 227/295 (76.95%), Query Frame = 0


Query: 12  DRVIEETFMNGLLSWIKAEVDFCRTTRLAQMMQLAQSVENREIVRA-------------- 71
           +RVIE+TFMNGLL W+++EV F R   LA+MM++AQ VENREIVR               
Sbjct: 208 ERVIEDTFMNGLLPWVRSEVVFYRPKGLAEMMEVAQIVENREIVRTEAKLNGYSGGRMTG 267

Query: 72  -------AKSGGSANSIDNKSDSTIPMRTITLRGVAGGEAKKEGPSKRLSDMEFRARKEK 131
                  A SGG A   ++KS+++ P+RTITLR  A  E ++EG  KRL D EF++RKEK
Sbjct: 268 QIGSNGKATSGGVAG--ESKSNTSFPIRTITLRSSAPTENRREGTYKRLPDAEFQSRKEK 327

Query: 132 ALYFRCNEKYSHDHKCKMREQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQA 191
            L FRCNEKYS DHKC+++EQRELRM+VVTEG+EE+EIVE+ E EEKEL  + ++E+   
Sbjct: 328 GLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEE-EKEEKELGRIEVNEDITI 387

Query: 192 IIELSINFVVGLSNPGTMKVRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHY 251
           ++ELSIN VVGL++PGTMKVRG++ G+EV++L+DCGATHNF+ EKLVK L +P K+TSHY
Sbjct: 388 VVELSINSVVGLNDPGTMKVRGKLLGEEVIILIDCGATHNFVSEKLVKKLILPIKETSHY 447

Query: 252 GVILGSDTTIKGKGICEAVELKMNDWKVVANFLPLELGGVDVVLEMQWLYSLGIT 286
           GVILGS   ++GKGICE +E+++N WK+V +FLPLELGGVDV+L MQWLYSLG+T
Sbjct: 448 GVILGSGAAVQGKGICEKLEVQLNGWKIVEDFLPLELGGVDVILGMQWLYSLGVT 499

[Close]

BLAST of CSPI05G13450.1 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 46/158 (29.11%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 130 EQRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAIIELSINFVVGLSNPGTMK 189
           + R+  +  +T  + + ++V+  +    EL+   ++++   + +     V+ L+    M+
Sbjct: 68  QSRQAELMSLTLVQAKLDVVKKKKGVINELE--ELEQDSYTLRQGMEQLVIDLTRNKGMR 127

Query: 190 VRGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGVILGSDTTIKGKGICEAV 249
             G I   +VV+ +D GAT NFI  +L  SL++PT  T+   V+LG    I+  G C  +
Sbjct: 128 FYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGI 187

Query: 250 ELKMNDWKVVANFLPLELG--GVDVVLEMQWLYSLGIT 286
            L + + ++  NFL L+L    VDV+L  +WL  LG T
Sbjct: 188 RLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGET 223

[Close]

BLAST of CSPI05G13450.1 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-09
Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 131 QRELRMYVVTEGKEEFEIVEDMESEEKELKMVRIDEEDQAIIELSINFVVGLSNPGTMKV 190
           Q EL  +++ EG   +    + E   ++ K +R     Q   + +  F  G      M+ 
Sbjct: 237 QVELMSFIMVEG-NTYGYGNEWEGLLEDFKTIR-----QVKRQSTTEFTKGKD----MRF 296

Query: 191 RGEIEGKEVVLLVDCGATHNFIFEKLVKSLQIPTKDTSHYGVILGSDTTIKGKGICEAVE 250
            G I   +VV+++D GAT+NFI ++L   L++PT  T+   V+LG    I+  G C  + 
Sbjct: 297 YGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCFGIN 356

Query: 251 LKMNDWKVVANFLPLELGGVDV----------VLEMQWL 280
           L + + ++  NFL L+L   DV           LE QWL
Sbjct: 357 LLVQEVEINENFLLLDLTKTDVDVILGYGGSQNLERQWL 385

The following BLAST results are available for this feature:

BLAST of CSPI05G13450.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G13450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL9	1.6e-91	60.41	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D5P9	1.6e-91	60.41	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TET8	3.6e-91	60.07	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BLF5	2.3e-90	59.32	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U9J7	5.2e-90	60.07	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI05G13450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745972.1	1.6e-93	62.59	uncharacterized protein LOC116406393 [Cucumis sativus]	[more]
TYK18846.1	3.3e-91	60.41	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06640.1	3.3e-91	60.41	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10078.1 Ty3/gyp...	[more]
KAA0039975.1	7.4e-91	60.07	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039461.1	4.8e-90	59.32	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00651.1 Ty3/gyp...	[more]

BLAST of CSPI05G13450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29750.1	1.1e-12	29.11	Eukaryotic aspartyl protease family protein	[more]
AT3G30770.1	7.6e-09	29.56	Eukaryotic aspartyl protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 149..169
None	No IPR available	PFAM	PF08284	RVP_2	coord: 197..280 e-value: 4.8E-13 score: 49.1
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 18..283
None	No IPR available	PANTHER	PTHR34482:SF20	SUBFAMILY NOT NAMED	coord: 18..283
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 190..279 e-value: 2.38504E-18 score: 76.2212
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 178..285 e-value: 1.8E-16 score: 62.1
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 185..284

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G13450	CSPI05G13450	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G13450.1.cds3	CSPI05G13450.1.cds3	CDS
CSPI05G13450.1.cds2	CSPI05G13450.1.cds2	CDS
CSPI05G13450.1.cds1	CSPI05G13450.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G13450.1	CSPI05G13450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity