CSPI05G01010.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI05G01010.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 1308848 .. 1309224 (-)
Sequence length354
RNA-Seq ExpressionCSPI05G01010.1
SyntenyCSPI05G01010.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTCGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTTCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCAAAACTGAAGACCGGTCTCGATGTTTCTCCATTGTATGAAATCAGACTCCGATGACATCTCCACCTCTGTTCATTATCTTTCGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

mRNA sequence

ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTCGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTTCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCAAAACTGAAGACCGGTCTCGATACTCCGATGACATCTCCACCTCTGTTCATTATCTTTCGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

Coding sequence (CDS)

ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTCGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTTCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCAAAACTGAAGACCGGTCTCGATACTCCGATGACATCTCCACCTCTGTTCATTATCTTTCGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

Protein sequence

MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRRRPSFSAKFKRKVILLRVVCPELEQIKTEDRSRYSDDISTSVHYLSQATVASQTPRLSHTRQLPFTRADL*
Homology
[Close]
BLAST of CSPI05G01010.1 vs. ExPASy TrEMBL
Match: A0A0A0KJB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G037000 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRRRPSFSAKFKRKV 60
           MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCR RPSFSAKFKRKV
Sbjct: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60

Query: 61  ILLRVVCPELEQIKTEDRSRYSDDISTSVHYLSQATVASQTPRLSHTRQLPFTRADL 118
           ILLRVVCPELEQI+TEDRSRYSDDISTSVHYL QATVASQTPRLSHTRQLPFTRADL
Sbjct: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 117

[Close]
BLAST of CSPI05G01010.1 vs. NCBI nr
Match: KGN49638.1 (hypothetical protein Csa_018418 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0 

Query: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRRRPSFSAKFKRKV 60
           MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCR RPSFSAKFKRKV
Sbjct: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60

Query: 61  ILLRVVCPELEQIKTEDRSRYSDDISTSVHYLSQATVASQTPRLSHTRQLPFTRADL 118
           ILLRVVCPELEQI+TEDRSRYSDDISTSVHYL QATVASQTPRLSHTRQLPFTRADL
Sbjct: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 117

The following BLAST results are available for this feature:
BLAST of CSPI05G01010.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G01010.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJB01.9e-5497.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G037000 PE=4 SV=1[more]
BLAST of CSPI05G01010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49638.13.9e-5497.44hypothetical protein Csa_018418 [Cucumis sativus][more]
BLAST of CSPI05G01010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G01010CSPI05G01010gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G01010.1.cds2CSPI05G01010.1.cds2CDS
CSPI05G01010.1.cds1CSPI05G01010.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G01010.1CSPI05G01010.1-proteinpolypeptide