CSPI04G20130.1 (mRNA) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAATTGTTTCATTTCAAAATTCTCAATCTTCTCCTTCTCCTACTGGCGGTATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAAGTATGTTTCATCTTCCCATGTCTCTCCTCCCTGAGTTCTTCTCAGTCTGTCTCTTGTTTGACTGATCCGATGGCTAATCCGTTTTGCATTAGTGGATTCTCTGTTTCATTTGCTTTTGCTCAGCATTTGAGAATTGGGCATTTTTTTTATAATTTTTTTTGCATTCTTTGCAAACAAAAATTTGTTACTATCCTGAAAAAGTTTTCTTCAGTTTGAAGTCTGGGTTGAAATTACTGGGGAAGATAATGTCATCGAGGAAATAATTTTGGTGGTACGGGAGTTGAACTAGGTTTGACAATGATGGAAGTTCAATGTTTCATTTGTATTTGATTTCATGAACTGTTAGCAGTATGATTTACATAGTAGAAGGTAATTGTCTCACTAATGTTTCTTTCGGTGTTTTAAATTCATTTTAGGGAAATAGGCAGACAGTATAGAAATTAAAGAATTTCTATTTTGATGAAAGATATACAAGAGGAAGAAGAACGATTAGGAATCGTACTCTCCCACTTAACTTAAATGATCACAGAAAGCATGGGAAAATTTTACAAGAACATCCATGCAAAGAACACATCTAGTCATCGAAAACGATCAAATGAATCAAAGTTTATTTAACCTCTCTGAATTTATAGCTCAAAATCTATATATCTTCCATTCCAATTTTCTCAAAATTTTTTTACTTTAACATGAAAAAGTGACGGGATAAAGCTTTCACGTTCTTAGAAGGATTCCCATACCCTTGAGGAAATGATTACATTAAAGTTTGTCTCAATTTCCATGAACAAGGTAGTTGTAATACGATCATGGATTTGCATGAATTAAAATTGATGGTGGATTGAAAATTATTCTTGAACATATTTGTCATTAAAATATATGTATTTATATTAGAAAAAAAAACAAGAAACACAAAATTTCACAAATGATTGAAAATTTATAAAAGAGTACAAGGATTCAAAGACTACAATGTGTAGACGTGGGAAAACAAAAGTTGCAAGTGGAAGAAAATTGCAAAATAGAAAGAGGGAAAGCTATAACTTGACCATAAAAAAAGCCTCTCAATCGTTTATTGTCATTTACAGATCTTAATATCAAGATTACACCTTTGGGATGATTTCCTTTCAAGAAGCCTTTCTTTCAATTTCCTATGTTGGAATTTTGGTTGCTACCACTTATCTTGAATAGCTATTTTTCTTCCTCTAATACCAAAAAATGATGTAATCTAGCATCTAAGTGAATAATCTCGAAGAATACTCAACCAAGCTGTTACTGTTATTCAAACAGTATTTTAATTACAAGAGATTATCCCTTTATTTTAGTTTGAATTTGTTGGTTTTAATTTGTTATCTGTTAGTTCTCAATACTTAGTCGGTCCCCCTTCGGCTAGTTGGGGTGTTTTGGTGGGCTGGTTGTTTTTGTATGCCCATGTATCCTTTTATTTTTTCTCAATGAAAGCAGGTTGTTTTATCAAAAGAAAAAAAAAAGAAGAAAAAAACAAATTAAAACTAAATTACAAGGATACCTAGTCATGCTACATCATACTTGTCTTGTGTGTTCCTGGATTGTGCATTTTCTTACTTTATTCTTTAGGTTTTTTTAGTAGACTGCAGACATTGGTTATTAATAATTTCTATGAAAGAGTTATTTTTAAATTTATTGGAAAATTTTAAAATATCTATTACATACCACTAGGTTCGCTATCATAATTGTTTAGCAATTCCTTGAGCATAAGCTAATAACTATAAAGTTCAGAAATTTATTGTTTATGCTTTTTTAACCAAATATGAAGTTGAAAGGTTTTGTTGAGTTTAGGCTTACATGTGGGAGAGTGAACAAAATTTTAGGCTTACGTTTAGAGGCATTTACTTTCTTATAAAGGAGAAAAATGAAAAAATAGTTTAATTAAAAGTTAAGACCTTTTAATATGGAATAAACATTTATCCATTATTTATTCATTTATTATAAGAAACTGAATATCATCAAAAGGATAAGTAAATGTTTATATGAATCCACATGTTTTAATATGTACTTAGGTATGTTTCTATAATTTCTTCAATTTTTTTTCTTTTTGAAATGAGATGGAAAATTTCCGTTGACAAAATGAAAAATTACATATAAGATGTTTGCAAGCTCCAAGTGTTTCTTGGCATACAATGCAAACAAGAAGAGAAGTACTATGTGAGAGCCATTGTTTAGAGGTATATTAGCACTATTGGTATGAATATGAGCAAGGGCATATTAGTAATAGCTAGTAAGTTGGTTAGGACTTTTAGTTACAAATAGAGGGAGTGGGATGGGGAGGAAGGTGTGGAGGTTTTAGTAAAATTTCCAGTGGAGAATTTGGGAGAGAGTAGCCCTCTTGATATTGCTCTTATATTTTAGTTTCTTCATTGATATTACAATTATATTTCTATCTTCCTATTTTTTTTATATTCTTTGTTGTTCTCGAGTGTTCTTGTTAGATGGGAACCCTAAATACTCAAATGTTTATAATCTATTGCAATTTTCTAATTAAAGAAATGAAAAAAACTACTGCATTATATATTGGCATCATTTTTTGAAGTTAATTAGCCATCTTATTTTTTTCTTTTCCAGTTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGGTAATATGCTGTACAACAAAGTAATTAGTGTTTGAATCAAATGATATCCTTATCCCCATAAATCAAAGCTCCAATACGTTTTTGGTCCAGGCTTTTAAGATCTCATATAAAATTGTAAACCTTAGAAAAATTTTCCACTTTTACCCTTAAGGACTCTATTGGAGCTTTGGTATCAAAGTTCAGTAAACAAATACGATGAAGTTTCATGATTTTACACTGATAGCAGATTAGCTAGCTGATAGGAAGACCATGGGAGTTAGGTGTAAATTTCACCCAGGATCTTGACTTTTAGTGTTTAGGTAGAATGTTGATGAGAAAATTTTGTTTTCTCAATAATCTTGCTTTTATTTTTCAATGTTGTTGTAACCCTAAACCCTAATTTTTTTTGAAAAGGAAACCAGCCTCTTTATTGATAAGAATAACGTATTTCAAGGTACAAAAGGTTTATATTTTTTTTGAAATGGAGACAAGAATTTCTTTATTAAAAATAACTCAAAGTACAAGAGAGTTAGAGTCAGACAAAGAGAGCCAAAAAGAAATAGTAATCAAAGGAGACCAAGAGGGATTAGGAGGTGCACCCAGACATCTCAACTAGGTTGACACCGCCTTAGTGCTCTCACATTATATCCAACAAAAATAATACCCAAAGTACAAATTAAAGTCTGTCCAGAGTACAAACAACATGTGCTGTGGAGCCAAACAAAAACTACAAACAACATCGAAAAAACAGCAGCAGTACAAATCAGTAAAACAATTAATCTTTCAGTGGTGGCTGCAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA AAAATTGTTTCATTTCAAAATTCTCAATCTTCTCCTTCTCCTACTGGCGGTATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAATTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA ATGGCGGAAATTGGAGAGTGCTCTGCTTCAAATTCATCCATGGAAAACTGGGCGAAGCTAATTCCAACTGATAAAATGTATGCGGATATTGAGATAAACTCTGATGAGACGGTTATCTTCTCGGAGACAAAATCCACATCTGTTGAAAAACATGAATGGTGCAAAATCACAAGGAATTCAGATCTAAATACTGCCACTCTGCAGAATAGAAGACCACCATTCATGAAGAAAGTGACTACTAATGATTTGGTAAAATGA MAEIGECSASNSSMENWAKLIPTDKMYADIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRRPPFMKKVTTNDLVK* Homology
BLAST of CSPI04G20130.1 vs. ExPASy TrEMBL
Match: A0A0A0KYR0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G508530 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 8.2e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. ExPASy TrEMBL
Match: A0A1S4DUC8 (E3 ubiquitin-protein ligase CHFR isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. ExPASy TrEMBL
Match: A0A1S3B4G1 (E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. ExPASy TrEMBL
Match: A0A1S3B4V7 (E3 ubiquitin-protein ligase CHFR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486049 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. ExPASy TrEMBL
Match: A0A6J1HW48 (E3 ubiquitin-protein ligase CHFR isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467202 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24 Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. NCBI nr
Match: XP_004146401.2 (E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus] >KAE8649715.1 hypothetical protein Csa_012000 [Cucumis sativus]) HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. NCBI nr
Match: XP_031739669.1 (E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis sativus]) HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. NCBI nr
Match: XP_031739668.1 (E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]) HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. NCBI nr
Match: XP_008442086.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]) HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. NCBI nr
Match: XP_016899584.1 (PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo]) HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. TAIR 10
Match: AT1G47570.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.5 bits (171), Expect = 7.6e-13 Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 0
BLAST of CSPI04G20130.1 vs. TAIR 10
Match: AT1G47570.2 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08 Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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