CSPI03G45960.1 (mRNA) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCATTCACTCGAGGGGTTTATATTTGTTCTTTTTCACGTTCTCGTCATCATTATGAAATGGCCGACTTTCTGCCTGAGTAGTATGTGAGCATTTCGGAAACTCTCTTCCTCTCCTACTTGCATGTTCAAACATACATTTCATTTCATTTTAGTTATTGTATTGTCTTGAATGTGACTTTCTAGGGTTGAGATTAAAATTTTAAATGTTGGAGAGGAGCTATGGAGGGAAACATTACCATTACAGATGGGTTCTCGCTTGTATCATCTTCAAGGACTCAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGATCTGTATGTGTTTTCTGTCCTTCGAAAGTTGAATTTTTTAAGCTCTTCTGAGTTTGTCTCATTCAAGGGAAACAACAGATACCTGCTAGCTTCTCGTTAGAACTAAAGAGAGACTTGACAAGCCCTGTTGAGAAGCAGAGCAGAAAGTTGCTTGATACTGAAAAGCTTATTTTTAAGACAGAGGGCATGAAGTTGAAGGGAGATCAGGTTGTCTTTTCCCCTAATTATTTTATTGAAATGATTGTAGACTTTAATTGATGAAATTGTTAAACTTTCGAACTTACAGTTTTGATACAGGTTGATGCGCATGTATTGGTTACTGTGAAATCCGAGGGAGTTGTTGCCATACCATCTGTACGGGAAATGGAGTCGATCGTCTACAATATAGGTATCTCATGTTTTTTCCCTATGTCATGTGGCATGGTTTCACAGACGTTCTGGCTTCAATTGATTGTTATCCCAACTGACTTGTTTTTTGGATAAGAAATCATTTCATTGACAAATAAAACATCCAAAGAATGCAATAGAGATAACAGGAAAAAACCCAAAAAAAGGATGAAACATTGGATTGGCCCCAACAATAGAAGATTACAATGAAATTAGAGGGGAAGGGGATGAAAAGAGGTTTTAGAAACAGAAAATGTAAAATGGATTGTAATGTGAGAAAGCCACAAAAACGAGGAGTCGAAACAAAACATTA ATGCCTCATTCACTCGAGGGGTTTATATTTGTTCTTTTTCACGTTCTCGTCATCATTATGAAATGGCCGACTTTCTGCCTGAGTAGTATGGTTGAGATTAAAATTTTAAATGTTGGAGAGGAGCTATGGAGGGAAACATTACCATTACAGATGGGTTCTCGCTTGTATCATCTTCAAGGACTCAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGATCTATACCTGCTAGCTTCTCGTTAGAACTAAAGAGAGACTTGACAAGCCCTGTTGAGAAGCAGAGCAGAAAGTTGCTTGATACTGAAAAGCTTATTTTTAAGACAGAGGGCATGAAGTTGAAGGGAGATCAGGTTGATGCGCATGTATTGGTTACTGTGAAATCCGAGGGAGTTGTTGCCATACCATCTGTACGGGAAATGGAGTCGATCGTCTACAATATAGGTATCTCATGTTTTTTCCCTATGTCATGTGGCATGGTTTCACAGACGTTCTGGCTTCAATTGATTGTTATCCCAACTGACTTGTTTTTTGGATAAGAAATCATTTCATTGACAAATAAAACATCCAAAGAATGCAATAGAGATAACAGGAAAAAACCCAAAAAAAGGATGAAACATTGGATTGGCCCCAACAATAGAAGATTACAATGAAATTAGAGGGGAAGGGGATGAAAAGAGGTTTTAGAAACAGAAAATGTAAAATGGATTGTAATGTGAGAAAGCCACAAAAACGAGGAGTCGAAACAAAACATTA ATGCCTCATTCACTCGAGGGGTTTATATTTGTTCTTTTTCACGTTCTCGTCATCATTATGAAATGGCCGACTTTCTGCCTGAGTAGTATGGTTGAGATTAAAATTTTAAATGTTGGAGAGGAGCTATGGAGGGAAACATTACCATTACAGATGGGTTCTCGCTTGTATCATCTTCAAGGACTCAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGATCTATACCTGCTAGCTTCTCGTTAGAACTAAAGAGAGACTTGACAAGCCCTGTTGAGAAGCAGAGCAGAAAGTTGCTTGATACTGAAAAGCTTATTTTTAAGACAGAGGGCATGAAGTTGAAGGGAGATCAGGTTGATGCGCATGTATTGGTTACTGTGAAATCCGAGGGAGTTGTTGCCATACCATCTGTACGGGAAATGGAGTCGATCGTCTACAATATAGGTATCTCATGTTTTTTCCCTATGTCATGTGGCATGGTTTCACAGACGTTCTGGCTTCAATTGATTGTTATCCCAACTGACTTGTTTTTTGGATAA MPHSLEGFIFVLFHVLVIIMKWPTFCLSSMVEIKILNVGEELWRETLPLQMGSRLYHLQGLKPDMWYEVKISYPGSIPASFSLELKRDLTSPVEKQSRKLLDTEKLIFKTEGMKLKGDQVDAHVLVTVKSEGVVAIPSVREMESIVYNIGISCFFPMSCGMVSQTFWLQLIVIPTDLFFG* Homology
BLAST of CSPI03G45960.1 vs. ExPASy TrEMBL
Match: A0A0A0LEU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895050 PE=4 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 5.1e-75 Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. ExPASy TrEMBL
Match: A0A1S3CRU2 (uncharacterized protein LOC103503615 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503615 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 9.0e-72 Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. ExPASy TrEMBL
Match: A0A6J1IJY5 (uncharacterized protein LOC111475555 OS=Cucurbita maxima OX=3661 GN=LOC111475555 PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64 Identity = 127/149 (85.23%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. ExPASy TrEMBL
Match: A0A1S3CQF3 (uncharacterized protein LOC103503615 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503615 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 2.0e-63 Identity = 132/149 (88.59%), Postives = 135/149 (90.60%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. ExPASy TrEMBL
Match: A0A6J1BYR8 (uncharacterized protein LOC111006945 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006945 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62 Identity = 122/149 (81.88%), Postives = 137/149 (91.95%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. NCBI nr
Match: XP_011652612.1 (uncharacterized protein LOC101222383 isoform X1 [Cucumis sativus] >KGN60308.1 hypothetical protein Csa_002653 [Cucumis sativus]) HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74 Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. NCBI nr
Match: XP_008466085.1 (PREDICTED: uncharacterized protein LOC103503615 isoform X1 [Cucumis melo] >XP_008466086.1 PREDICTED: uncharacterized protein LOC103503615 isoform X1 [Cucumis melo] >XP_008466087.1 PREDICTED: uncharacterized protein LOC103503615 isoform X1 [Cucumis melo]) HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71 Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. NCBI nr
Match: XP_038892686.1 (uncharacterized protein LOC120081684 isoform X1 [Benincasa hispida] >XP_038892687.1 uncharacterized protein LOC120081684 isoform X1 [Benincasa hispida] >XP_038892688.1 uncharacterized protein LOC120081684 isoform X1 [Benincasa hispida] >XP_038892689.1 uncharacterized protein LOC120081684 isoform X1 [Benincasa hispida]) HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67 Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. NCBI nr
Match: XP_023534968.1 (uncharacterized protein LOC111796539 [Cucurbita pepo subsp. pepo] >XP_023534969.1 uncharacterized protein LOC111796539 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 256.9 bits (655), Expect = 1.3e-64 Identity = 127/149 (85.23%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. NCBI nr
Match: KAG6591724.1 (hypothetical protein SDJN03_14070, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 256.5 bits (654), Expect = 1.7e-64 Identity = 128/149 (85.91%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. TAIR 10
Match: AT1G76480.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1). ) HSP 1 Score: 138.7 bits (348), Expect = 4.8e-33 Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. TAIR 10
Match: AT1G20890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30 Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 0
BLAST of CSPI03G45960.1 vs. TAIR 10
Match: AT1G76480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 9.7e-10 Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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