CSPI03G20830.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20830.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	HMG-Y-related protein A-like
Location	Chr3: 16869985 .. 16871650 (+)
Sequence length	1487
RNA-Seq Expression	CSPI03G20830.2
Synteny	CSPI03G20830.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGAAAATGTGTTTTATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACAAGTTTATTATAAAGGTAATTTGGTTTGAATTCTCTTGAAATGCAAGGAAAGCAGAATTCTGATTCATTGGATATTAAGTTTCTTTTTAGAACTGCAAATCATTGAAATTGATAAAAGTGGATCGTGAAAATGAAAAGAGAAGGTTGAATTGAAGAAACACCATTTTTTTAAGAAGGTGTTTTAAATGATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA

mRNA sequence

CTTGAAAATGTGTTTTATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACAAGTTTATTATAAAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA

Coding sequence (CDS)

ATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG

Protein sequence

MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ*

Homology

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48
Identity = 106/163 (65.03%), Postives = 126/163 (77.30%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HLN MK SG+L F +NNYM
Sbjct: 18  MIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHLNKMKDSGELSFKQNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           K DP APP+RGRGRPPK K+PLP  +V+S P+PRGRPPKDPNAPPK PK    K + G+G
Sbjct: 78  KADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPGSG 137

Query: 121 KPRGRPRKFPQSASTPAPPA-PSGRPRGRPPKVKATLTEVSVQ 163
           +PRGRP+K P+S +  AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 138 RPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 8   ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 67
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 68  PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPR 127
           P+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNAPPK PK    K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPATGRPRGRPK 120

Query: 128 KFPQSASTPAPPAPS-GRPRGRPPKVKATLTEVSVQ 163
           K  +S + P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-32
Identity = 89/174 (51.15%), Postives = 114/174 (65.52%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYM
Sbjct: 29  MIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYM 88

Query: 61  KRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPNAPPKPPK 120
           K DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK    P  P +
Sbjct: 89  KPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK----PKDPSE 148

Query: 121 PVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL 157
           P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T+
Sbjct: 149 PPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPTV 198

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.9e-27
Identity = 84/169 (49.70%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL  MK SG+LVF KNNY 
Sbjct: 18  MILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNYF 77

Query: 61  KRD-PTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKV---S 120
           +   P APP+RGRGRPPK++ P   +    SP   GR       PPK   P++  V   +
Sbjct: 78  RAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRGRPPKAKSPLEAAVKQAT 137

Query: 121 SGTGKPRGRPRKFPQS--ASTPAP---PAPSG-------RPRGRPPKVK 154
           +G  KPRGRP K  ++  A++P+P   PAP+G       R RGRPPKV+
Sbjct: 138 AGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRGRPPKVR 183

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.6e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 138 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.9e-82
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.9e-82
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 149/166 (89.76%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSS 120
           KRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA   PPKPPKPVQMKVSS
Sbjct: 78  KRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSS 137

Query: 121 GTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           GTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVSVQQ
Sbjct: 138 GTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ 183

[Close]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 149/166 (89.76%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSS 120
           KRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA   PPKPPKPVQMKVSS
Sbjct: 78  KRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSS 137

Query: 121 GTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           GTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVSVQQ
Sbjct: 138 GTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ 183

[Close]

BLAST of CSPI03G20830.2 vs. NCBI nr
Match: XP_031739266.1 (HMG-Y-related protein A isoform X1 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 34  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 93

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 94  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 153

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 154 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 196

[Close]

BLAST of CSPI03G20830.2 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 138 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. NCBI nr
Match: KAE8650587.1 (hypothetical protein Csa_009737 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 163

[Close]

BLAST of CSPI03G20830.2 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.1e-82
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           KPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP SSV+S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 164
           K RGRPRKFP + + P+PP PSGRPRGRPPKVK +LTEVSVQQ
Sbjct: 138 KARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830.2 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-33
Identity = 89/174 (51.15%), Postives = 114/174 (65.52%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60
           MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYM
Sbjct: 29  MIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYM 88

Query: 61  KRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPNAPPKPPK 120
           K DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK    P  P +
Sbjct: 89  KPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK----PKDPSE 148

Query: 121 PVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL 157
           P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T+
Sbjct: 149 PPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPTV 198

[Close]

BLAST of CSPI03G20830.2 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-12
Identity = 71/204 (34.80%), Postives = 90/204 (44.12%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY- 60
           MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV  K +Y 
Sbjct: 81  MICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYK 140

Query: 61  MKRDPTAPP------------------------------------RRGRGRPPKSK---- 120
           +   P  PP                                    +RGRGRPPK+K    
Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 200

Query: 121 SPLPLS----SVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSAST 155
            P PL+    +   S  P  RP +    PP+ P   Q  V     +P GRPRK   S + 
Sbjct: 201 QPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK----RPPGRPRKDGTSPTV 260

[Close]

BLAST of CSPI03G20830.2 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-06
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNN 59
           MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +    +++   NN
Sbjct: 61  MIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of CSPI03G20830.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	3.5e-48	65.03	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	1.4e-44	64.74	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	4.7e-32	51.15	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	5.9e-27	49.70	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of CSPI03G20830.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9	1.6e-83	100.00	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]
A0A5D3DJY3	3.9e-82	98.16	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	3.9e-82	98.16	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A6J1J6G8	3.0e-74	89.76	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	3.0e-74	89.76	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]

BLAST of CSPI03G20830.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739266.1	3.3e-83	100.00	HMG-Y-related protein A isoform X1 [Cucumis sativus]	[more]
XP_004145857.1	3.3e-83	100.00	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
KAE8650587.1	3.3e-83	100.00	hypothetical protein Csa_009737 [Cucumis sativus]	[more]
XP_008456999.1	8.1e-82	98.16	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_038878302.1	2.8e-74	89.57	HMG-Y-related protein A-like [Benincasa hispida]	[more]

BLAST of CSPI03G20830.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	3.3e-33	51.15	high mobility group A	[more]
AT1G48620.1	2.5e-12	34.80	high mobility group A5	[more]
AT5G08780.1	3.4e-06	41.38	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 89..100 score: 56.94 coord: 69..79 score: 68.18 coord: 141..151 score: 68.56
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 143..155 e-value: 1.1 score: 15.1 coord: 120..132 e-value: 1.1 score: 15.1 coord: 69..81 e-value: 3.9 score: 11.9 coord: 91..103 e-value: 0.79 score: 15.8
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 120..128 e-value: 0.96 score: 9.5 coord: 70..80 e-value: 1.3 score: 9.1 coord: 91..102 e-value: 0.1 score: 12.6 coord: 143..153 e-value: 0.14 score: 12.1
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 89..101 score: 43.96 coord: 118..129 score: 33.33 coord: 132..151 score: 41.43
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..58 e-value: 1.6E-11 score: 54.3
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..56 e-value: 5.8E-7 score: 29.8
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 1..63 score: 19.341192
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..72 e-value: 1.8E-10 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..146
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..158
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..158
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G20830	CSPI03G20830	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G20830.2.utr5p1	CSPI03G20830.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G20830.2.cds2	CSPI03G20830.2.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G20830.2.utr3p1	CSPI03G20830.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G20830.2	CSPI03G20830.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding