CSPI03G20830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	HMG-Y-related protein A-like
Location	Chr3: 16869036 .. 16871650 (+)
RNA-Seq Expression	CSPI03G20830
Synteny	CSPI03G20830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTCCTCTTTCTCTCTTCCAGTTTCAGATACCCATCTACCAAAAACAATCATCTGTCCTTTTCTTTTCCTCTTAATTTTTTTTACCTCTAATTTGTTGAATCTATTATGGGTTTATGTGTTATGTCTTAATTTGTTCTTCAATTAGGGTTTCTTGTGATTTGTTTCTGATTTTTGTATCTTGTTTACTGAACTTCTTTTTTTTTTTTTTTTTTTGATTTTTTTCTTCTTGTTATGTTGTAATTTGGTGAACAGGGGAGAGTCCTTTTTTTTTTTTTTTTTTTTTTCTTTCTTCTTTGTGTTTTCTTTCATTTCCTTCTCGAATCTGAGTATTCTTTTTGGAAAAAATATTGGAATGGTTTTTTTTTTTCCCTTTTTCATCGTCACTAAATTTTGATTGATTCAGCTGAGATTTCTCATTTCTCACTGCTGCTTCCTCTATTGTTGGTTTCCATTCTTGTTTTCAATTATTCTTCACTTCCATCATTCTTTAAAAGTGGTTTTGAGTTTTGAATTTTGTTTGAAATAGAAGAGATACATTAATTTTACTGAGATGTTAATGTTATAAAAAAATGAGAAGTGTTAAAAGATTTGAAGATGTTAGATCTGTTGTTAACTGTAAAGTAAGACGGAATCTTAAGTTAAAGTATGACTTGAAAATGTGTTTTATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACAAGTTTATTATAAAGGTAATTTGGTTTGAATTCTCTTGAAATGCAAGGAAAGCAGAATTCTGATTCATTGGATATTAAGTTTCTTTTTAGAACTGCAAATCATTGAAATTGATAAAAGTGGATCGTGAAAATGAAAAGAGAAGGTTGAATTGAAGAAACACCATTTTTTTAAGAAGGTGTTTTAAATGATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA

mRNA sequence

GAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA

Coding sequence (CDS)

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG

Protein sequence

MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ*

Homology

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BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.3e-58
Identity = 121/180 (67.22%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPA-PSGRPRGRPPKVKATLTEVSVQ 180
           PPK PK    K + G+G+PRGRP+K P+S +  AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSPK---AKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-44
Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPR 144
           P+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNAPPK PK    K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPATGRPRGRPK 120

Query: 145 KFPQSASTPAPPAPS-GRPRGRPPKVKATLTEVSVQ 180
           K  +S + P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

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BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 95/181 (52.49%), Postives = 121/181 (66.85%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

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BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 95/186 (51.08%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPN 120
             MK SG+LVF KNNY +   P APP+RGRGRPPK++ P   +    SP   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ASTPAP---PAPSG-------RPRG 171
            PPK   P++  V   ++G  KPRGRP K  ++  A++P+P   PAP+G       R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

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BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 54/184 (29.35%), Postives = 77/184 (41.85%), Query Frame = 0


Query: 2   ATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLN 61
           A ++ +  P+ PPY EMI  AI  L    GS++  I+K+IE    +LP+    LL   L 
Sbjct: 46  APRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLK 105

Query: 62  MMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAP 121
              AS  LV  KN+Y  + P+         P K K     S   + PK   +P   P A 
Sbjct: 106 KFVASEKLVKVKNSY--KLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAK 165

Query: 122 PKP---------PKPVQMKVSSGTGKPRGRPR---KFPQSASTPAPPAPSGRPRGRPPKV 174
            KP          KP      +   KP  + +   K    A+  A P  + +P+  P K 
Sbjct: 166 AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKT 225

[Close]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.9e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.1e-93
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.1e-93
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 5.9e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: XP_031739266.1 (HMG-Y-related protein A isoform X1 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 8.0e-91
Identity = 180/196 (91.84%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIEST 60
           MATQEVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIEST
Sbjct: 1   MATQEVNKPPSLPPYPEISLLQRDNKPYKFIIKMIFRAIEALNSDNGSNKSTISKYIEST 60

Query: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV 120
           YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV
Sbjct: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV 120

Query: 121 ISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRG 180
           ISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRG
Sbjct: 121 ISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRG 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SSV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGK RGRPRKFP + + P+PP PSGRPRGRPPKVK +LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.5 bits (820), Expect = 9.5e-84
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of CSPI03G20830 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 95/181 (52.49%), Postives = 121/181 (66.85%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

[Close]

BLAST of CSPI03G20830 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 78/221 (35.29%), Postives = 99/221 (44.80%), Query Frame = 0


Query: 3   TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNY-MKRDPTAPP---------------------------------- 122
             +K SG LV  K +Y +   P  PP                                  
Sbjct: 124 KTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQ 183

Query: 123 --RRGRGRPPKSK----SPLPLS----SVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSG 172
             +RGRGRPPK+K     P PL+    +   S  P  RP +    PP+ P   Q  V   
Sbjct: 184 TIKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK-- 243

[Close]

BLAST of CSPI03G20830 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 69/208 (33.17%), Postives = 89/208 (42.79%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNY---------------------------------MKRDPTA------PPRRGRGRPP 132
           K +Y                                    DP A      P +RGRGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KSK---SPLPLSSV--ISSPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRK 172
           K K    P PL  +   +  +  G+P    +   +P   P PV      G G+PR     
Sbjct: 186 KPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSA 245

[Close]

BLAST of CSPI03G20830 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of CSPI03G20830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	9.3e-58	67.22	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	1.2e-44	64.74	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	1.5e-36	52.49	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	2.5e-34	51.08	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
P37218	1.6e-04	29.35	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]

BLAST of CSPI03G20830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9	2.9e-94	100.00	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]
A0A5D3DJY3	7.1e-93	98.33	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	7.1e-93	98.33	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A6J1J6G8	4.6e-84	89.62	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	4.6e-84	89.62	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]

BLAST of CSPI03G20830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145857.1	5.9e-94	100.00	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_008456999.1	1.5e-92	98.33	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_031739266.1	8.0e-91	91.84	HMG-Y-related protein A isoform X1 [Cucumis sativus]	[more]
XP_038878302.1	1.1e-84	90.00	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_022935331.1	9.5e-84	89.62	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]

BLAST of CSPI03G20830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	1.1e-37	52.49	high mobility group A	[more]
AT1G48620.1	3.4e-15	35.29	high mobility group A5	[more]
AT3G18035.1	3.6e-12	33.17	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	3.1e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 89..100 score: 56.94 coord: 69..79 score: 68.18 coord: 141..151 score: 68.56
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 143..155 e-value: 1.1 score: 15.1 coord: 120..132 e-value: 1.1 score: 15.1 coord: 69..81 e-value: 3.9 score: 11.9 coord: 91..103 e-value: 0.79 score: 15.8
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 120..128 e-value: 0.96 score: 9.5 coord: 70..80 e-value: 1.3 score: 9.1 coord: 91..102 e-value: 0.1 score: 12.6 coord: 143..153 e-value: 0.14 score: 12.1
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 89..101 score: 43.96 coord: 118..129 score: 33.33 coord: 132..151 score: 41.43
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..58 e-value: 1.6E-11 score: 54.3
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..56 e-value: 5.8E-7 score: 29.8
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 1..63 score: 19.341192
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..72 e-value: 1.8E-10 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..146
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..158
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..158
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20830.1	CSPI03G20830.1	mRNA
CSPI03G20830.2	CSPI03G20830.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding