CSPI02G17420.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI02G17420.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Coilin
Location	Chr2: 16459407 .. 16463531 (+)
Sequence length	1813
RNA-Seq Expression	CSPI02G17420.2
Synteny	CSPI02G17420.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACCAGGTGTCCCAGTTTGCCGCATTGTTCTTCTAACAGGGTTAAGAAGAATGTGGACAATGTGGCTGCGGCTGACAAGATGGAAGAGCTTGTGAACAAGTGCACTGACTACAAAAATGAAGCAGATGCAGTTGATGAACCTTATGAACTTCTGCGTCAGTTGGAAGACACTTTGGATGCGGGAAGCGTCAAGAAAACACTTTCCAGCAAGAGGAAGGCACTGAAAACACTTCACAGTTCAAAGTACGTAGCACCAATATCTGTCATTGCAGATGCTTAAGAATCGCATAGCGTTAATTTTTATGAGCAGACAACATTTCAATGTTCAAACACCATGTTCTTGAAGGGACTTGAAACCTAATGGTCCCTTGGTGCTTATATGTTGCTTTTGTTTATGGCAGTTGCTTCAATGTGAATGGTACCAGTTTATAAAATGCCATTTATGGTTCCAGTAGGATTCGGAAGTGATTTTAAATTTCTATATTATTCGATACCTTTGTAAACAAGATTCTGAAGTTGGTAAAAGAAGAACCAGGATGTAAGTGTCACGTACTTGTTAGTTCTTGCTGTTTAAGGGTTAGTTATCGTAACTATATACTTAAGTTTGAATAAGTTGCGTTGAAAACGTGGTTCTGACTCACTGGTAACATCACACCTCGACCATGCGAGGTTTGTGAACTAATACAAGTCAGAATGATGTTGAATTTTATTTTATTCCCAACCCATGGTTTTCAGGTGACACCATCTCTTTCTAGTCTCCATATCAGGTATATATATGGTCGGTATCCACATACTAGTTTTAGGACAATTTTCATTTTGTTTGACGAAGTTTCATTTCATATTGCATGGTTGTACCTTGTAAGAATTGTCTTATGCGTATTCATGTTTCTTATTATTCTGTCCAACTTGTAGGATGAAGAAAAAAAGAGTTGTTCCAACTTCCAAATATTTGAAGTTTCGTACAGAGCATAATGGTAGATTCCAGCACAAAGTTCTTTCTGAAAAGAGTCTGGTCGAGAAGCACAAATCATCCAGCGGTCATACCGATACAAGTATCTCCAACGAGCAAAAGGCTAGTGAAGTTTATTTGGCCAGCGTAGTTCAATTAATAGAAGGGTCTTTGTTTTATTAATTTTTGGAGATGAAGTATGGAAAGATCGATCCTTGTCTCAACCCCAACTATATGAATCTCTGACAATGTCCTCATTCCCATAATCAATCTTTATTTAAACTTTTAGAGATTTAGTTTGTAGAAATTGATTTCCTATGATATTACTTAATAAGATCACATGAAATTAGTCTTTTAAACTATTATGGAAACCAGGAATTGATTCGATTTTCTTCAGTTTATAGGATGTTAACTCTCTAAGTCATTTAGCCTTGTGTAGAAAAGTAATTAACTCATTGTAATTTTTCATCTTTTTCAGCTTCAAAAGTTTTCTTCTCCGGAGAAGGATAAAAGGAAAATGATGAGGAAACAGGTCAAAACTAAGAAGAAAAAGGTACTCGGTGCTCTTGGTGCCTCCTCCTGAGATGGTTTATCTTTCTTATATACTAGTGGAGTTGACATCCTGTTTCAACGTCAACTCTACTTTCTATTGGATGTGACCTATATCTTTAACCACCTACATGGGTAAAATTGATTAACTATTGTATCTTTTAGGTACTGGGTTGTTAGATTGGAAAAACATATGGCATACACGTTTAGCCATCTAAAAATGAGACTGCGTCAATTCCATCCTTGAGTTATTATTATTCCTTGATCATTCTGCAGGTACAGCAACAAAGAGTTGAAAAGAGTAACCGTAAGTTACCTGATGAGAATTACATTGAGGACTCTGAACAGCTAGCTGGCAGTAGTGATGATGAAGAAATTGTACCGGTGGTAATTAGACCCGGCCATGTTCGTTTTCTGCCTCTTGGTCAAGGTCTGTCTGTGTTTCTTATTATTTGAAAATGCATGTTATTACTTTATGCTGCTTGGTCCAAGTACTAACAAGTTTATTTAAATTTGAGTTCCAGCAGAGGCAAACCAGATTGTCCATCCAGGTCAAGCTTCAATGGTATTATCCCTGTGCTTAGATCTCTTTTCTGTTGTGTGTGGTCCTTGCAAGTGAAACCAAGTTCTTCGACAATGGAATTGACTGTTTCAGGACATCATACGGTTGAATGGGATGGCAGTTAAGAATGTAAGAAACAGGGGTCAAAGGAAGTCCTCATCTTGGACGAGTAATTGCAAGAACTGTGAAGGACAAAGTTCTAAGCCGCAAGCTAAAAAAGGTTTATCAACTATGAACCCCCCGATTGACTTCGATAAGCTCAAACCTTGTGCTAGCTTGCCCGAGGTTTGTTTTGATAATTTTTACATGCTTATGAGTATTGCATGTCCTCTCCTACTCTGGAATTAGCTTCTGTCGCTAACATATGTTTATATTGGCTCTTGTTTGGAATTGGATTCATCTCTTCCATGAACTTGTATATTGCAGAGAGGTGATATAATTGCATATCGTTTAATAGAATTATCATCAACCTGGACTCCGGAACTTTCCTCCTTCAGAGTAATAATTCTGTTGGCTCCCTTATGATATAAAATTATAAATATTTTAGATGATGCGACATAGTTATACCTTGCTCAATGTCTGCTAGGTTGGAAAGGTATTGTGGTGTAAACCTGAAGCAAATAAGATTATGGTGATTCCTGTTCCAGAATATCCATTTGTTTATAAGGCGGCAATGAATGATGAATCAATTAAACATCCATATGCAGAGGATGGATCTTTAAAGGTACTCAAATTAGCCATCATTTTTTCTGTTTTAGGAATTGCTAGTACTCATGGTCTTAAACAAGCACCAACCACTATTGGTGGCTCAGTAGTCCTTTGCTATCCAATATAGTTTTAATTGTTCTTGCTTTATGAGAAAAGGTCCCGGATAGTTGGGCTTCTATCTCTCCGGTGTTGATATAGATTTAAGATTCAGCTGTTTGTAAACCATGAAGCTAATAGATAGTTAATAGTCTATTTATCTTGTTCACTTTGAGTTAATCAGATAATGTAAGAAGCATGTCACCAGGGACGATCAAATTTAGAGCATCTTAAACTTAATTAAATTGTACTAGCCAACTGCCTGTTTTCCGCTGTCAGGTCAGGCTCAGCTTCCTGATCGATATTTTGCCAAGATGGAAAATTATGTTCCCATTTAGTTCCTAGGTTTAGAGGCTATCTCAAGCATAAGGCCTCATAGCAGCTGCTAATTGCTATTTGAAAGAGATTAACAAGTGGCGCTTTAATTTATACAGACAGATTACTCCTCACTCATTGACATCAAAATCGTTGAGCATAAAAATTCAGTAGGTTTTGAAGCAACTGCTGGTAATATCAGAGAAGCATCTGGTACAAAACAAAGTTGGAACAAGTGGGAGAACCATTCCACTGCACCGAAACAAAGCTGGAACAAATTGGGGGAGAACCACCCCAAGGCACCAAAACAAAGCTGGAAAAAGTGGGAAGACCGTACCAGTGTACGAGGTATAGAAGCTACTTGTGTTATGTGTTAGGATTAAGTAAATGTGATGCTACAACAATCTTATTTGCTGAATTCTGTGTGTTGTCTCTAGTCATTTCAGGAAATGGAAAGGAAAATGGATGGGATGAAATTCTCCAGGCTTTCGGGGCAAAGAAAGCTAAATTGTGCAATGAAGTTCGATGGAGAACAGGGGAGAATAAAGCTTGGGAAGGAGCTCATGATCCATGAGAATCACTCTAGTGGGGTACATTTGCTAGCATGTAAAGTCGTCAAGCATCTCAAGGACAAGTTGTCTACTTTTCAATTTATGCAATTTTGTACAAAATTTAGTTACATTCTCTGTAAAAGGCGGGAAGGCTATGGAAATTAGGCATTTTGTTTGAGTGTTTAGGCTCAACAATTTCATTTTGTTGTAAAGAACTTTTGTATTTCTATCATGGTGGAAGCAAAATGGGGAATGCTGCTTCGCTTCCATCTCAAGATAGAATATTTTCAGCTACAGTAGTGTATTGTTTTTGCCTGCTGGAGAAACTTTAATGTAACAACTACACTTCAGGAATTTTGGTCACATATATCAACTAAGCAAAGAAATTTCACG

mRNA sequence

AAGACCAGGTGTCCCAGTTTGCCGCATTGTTCTTCTAACAGGGTTAAGAAGAATGTGGACAATGTGGCTGCGGCTGACAAGATGGAAGAGCTTGTGAACAAGTGCACTGACTACAAAAATGAAGCAGATGCAGTTGATGAACCTTATGAACTTCTGCGTCAGTTGGAAGACACTTTGGATGCGGGAAGCGTCAAGAAAACACTTTCCAGCAAGAGGAAGGCACTGAAAACACTTCACAGTTCAAAGATGAAGAAAAAAAGAGTTGTTCCAACTTCCAAATATTTGAAGTTTCGTACAGAGCATAATGGTAGATTCCAGCACAAAGTTCTTTCTGAAAAGAGTCTGGTCGAGAAGCACAAATCATCCAGCGGTCATACCGATACAAGTATCTCCAACGAGCAAAAGCTTCAAAAGTTTTCTTCTCCGGAGAAGGATAAAAGGAAAATGATGAGGAAACAGGTCAAAACTAAGAAGAAAAAGGTACAGCAACAAAGAGTTGAAAAGAGTAACCGTAAGTTACCTGATGAGAATTACATTGAGGACTCTGAACAGCTAGCTGGCAGTAGTGATGATGAAGAAATTGTACCGGTGGTAATTAGACCCGGCCATGTTCGTTTTCTGCCTCTTGGTCAAGCAGAGGCAAACCAGATTGTCCATCCAGGTCAAGCTTCAATGGACATCATACGGTTGAATGGGATGGCAGTTAAGAATGTAAGAAACAGGGGTCAAAGGAAGTCCTCATCTTGGACGAGTAATTGCAAGAACTGTGAAGGACAAAGTTCTAAGCCGCAAGCTAAAAAAGGTTTATCAACTATGAACCCCCCGATTGACTTCGATAAGCTCAAACCTTGTGCTAGCTTGCCCGAGAGAGGTGATATAATTGCATATCGTTTAATAGAATTATCATCAACCTGGACTCCGGAACTTTCCTCCTTCAGAGTTGGAAAGGTATTGTGGTGTAAACCTGAAGCAAATAAGATTATGGTGATTCCTGTTCCAGAATATCCATTTGTTTATAAGGCGGCAATGAATGATGAATCAATTAAACATCCATATGCAGAGGATGGATCTTTAAAGACAGATTACTCCTCACTCATTGACATCAAAATCGTTGAGCATAAAAATTCAGTAGGTTTTGAAGCAACTGCTGGTAATATCAGAGAAGCATCTGGTACAAAACAAAGTTGGAACAAGTGGGAGAACCATTCCACTGCACCGAAACAAAGCTGGAACAAATTGGGGGAGAACCACCCCAAGGCACCAAAACAAAGCTGGAAAAAGTGGGAAGACCGTACCAGTGTACGAGTCATTTCAGGAAATGGAAAGGAAAATGGATGGGATGAAATTCTCCAGGCTTTCGGGGCAAAGAAAGCTAAATTGTGCAATGAAGTTCGATGGAGAACAGGGGAGAATAAAGCTTGGGAAGGAGCTCATGATCCATGAGAATCACTCTAGTGGGGTACATTTGCTAGCATGTAAAGTCGTCAAGCATCTCAAGGACAAGTTGTCTACTTTTCAATTTATGCAATTTTGTACAAAATTTAGTTACATTCTCTGTAAAAGGCGGGAAGGCTATGGAAATTAGGCATTTTGTTTGAGTGTTTAGGCTCAACAATTTCATTTTGTTGTAAAGAACTTTTGTATTTCTATCATGGTGGAAGCAAAATGGGGAATGCTGCTTCGCTTCCATCTCAAGATAGAATATTTTCAGCTACAGTAGTGTATTGTTTTTGCCTGCTGGAGAAACTTTAATGTAACAACTACACTTCAGGAATTTTGGTCACATATATCAACTAAGCAAAGAAATTTCACG

Coding sequence (CDS)

ATGGAAGAGCTTGTGAACAAGTGCACTGACTACAAAAATGAAGCAGATGCAGTTGATGAACCTTATGAACTTCTGCGTCAGTTGGAAGACACTTTGGATGCGGGAAGCGTCAAGAAAACACTTTCCAGCAAGAGGAAGGCACTGAAAACACTTCACAGTTCAAAGATGAAGAAAAAAAGAGTTGTTCCAACTTCCAAATATTTGAAGTTTCGTACAGAGCATAATGGTAGATTCCAGCACAAAGTTCTTTCTGAAAAGAGTCTGGTCGAGAAGCACAAATCATCCAGCGGTCATACCGATACAAGTATCTCCAACGAGCAAAAGCTTCAAAAGTTTTCTTCTCCGGAGAAGGATAAAAGGAAAATGATGAGGAAACAGGTCAAAACTAAGAAGAAAAAGGTACAGCAACAAAGAGTTGAAAAGAGTAACCGTAAGTTACCTGATGAGAATTACATTGAGGACTCTGAACAGCTAGCTGGCAGTAGTGATGATGAAGAAATTGTACCGGTGGTAATTAGACCCGGCCATGTTCGTTTTCTGCCTCTTGGTCAAGCAGAGGCAAACCAGATTGTCCATCCAGGTCAAGCTTCAATGGACATCATACGGTTGAATGGGATGGCAGTTAAGAATGTAAGAAACAGGGGTCAAAGGAAGTCCTCATCTTGGACGAGTAATTGCAAGAACTGTGAAGGACAAAGTTCTAAGCCGCAAGCTAAAAAAGGTTTATCAACTATGAACCCCCCGATTGACTTCGATAAGCTCAAACCTTGTGCTAGCTTGCCCGAGAGAGGTGATATAATTGCATATCGTTTAATAGAATTATCATCAACCTGGACTCCGGAACTTTCCTCCTTCAGAGTTGGAAAGGTATTGTGGTGTAAACCTGAAGCAAATAAGATTATGGTGATTCCTGTTCCAGAATATCCATTTGTTTATAAGGCGGCAATGAATGATGAATCAATTAAACATCCATATGCAGAGGATGGATCTTTAAAGACAGATTACTCCTCACTCATTGACATCAAAATCGTTGAGCATAAAAATTCAGTAGGTTTTGAAGCAACTGCTGGTAATATCAGAGAAGCATCTGGTACAAAACAAAGTTGGAACAAGTGGGAGAACCATTCCACTGCACCGAAACAAAGCTGGAACAAATTGGGGGAGAACCACCCCAAGGCACCAAAACAAAGCTGGAAAAAGTGGGAAGACCGTACCAGTGTACGAGTCATTTCAGGAAATGGAAAGGAAAATGGATGGGATGAAATTCTCCAGGCTTTCGGGGCAAAGAAAGCTAAATTGTGCAATGAAGTTCGATGGAGAACAGGGGAGAATAAAGCTTGGGAAGGAGCTCATGATCCATGA

Protein sequence

MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKRVVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDKRKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRFLPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKKGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP*

Homology

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy Swiss-Prot
Match: Q8RWK8 (Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-24
Identity = 123/470 (26.17%), Postives = 219/470 (46.60%), Query Frame = 0


Query: 2   EELVNKCTDYKNEA---DAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALK--------- 61
           EE   +   Y++E+   +  +E  E + + + +    +  K  S+KRK  K         
Sbjct: 130 EEFQKETGGYESESEEDELEEEAEEFVPEKKASKKRKTSSKNQSTKRKKCKLDTTEESPD 189

Query: 62  -----TLHSSKMKKKRVVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTD---T 121
                 + S+ +KKK+   +        +       K +++     + + S  H D    
Sbjct: 190 ERENTAVVSNVVKKKKKKKSLDVQSANNDEQNNDSTKPMTKSKRSSQQEESKEHNDLCQL 249

Query: 122 SISNEQKLQKFSSPEKDKRKMMRKQVKTKKKKVQQQRVEKSNRKLP---------DENYI 181
           S   ++   + +  +K KR+ +R++ K +K+++ Q ++  +  + P          E + 
Sbjct: 250 SAETKKTPSRSARRKKAKRQWLREKTKLEKEELLQTQLVVAPSQKPVITIDHQATKEKHC 309

Query: 182 E--DSEQLAGSSD--DEEIVPVVIRPGHVRFLPL-GQAEANQIVHPGQASMDIIRLNGMA 241
           E  +++Q    SD   +E+VPV +RPGH+RF PL G  EA+    P    ++ +  NG  
Sbjct: 310 ETLENQQAEEVSDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDSEP---LVENVLWNGNM 369

Query: 242 VKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKKGLSTMNPPIDFDKLKPCASLPERGDII 301
            K    +   + S ++        + +  Q  +  +  N PID+++L       ++GD+I
Sbjct: 370 TKKKGQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCPIDYEQLVAYTGSVKKGDVI 429

Query: 302 AYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMVIPVPEYPFVYKAAMNDESIKHP--- 361
           AYRLIEL+S+WTPE+SSFRVGK+ +  P++  + ++PV E+P   K   +D+    P   
Sbjct: 430 AYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPIEKKTEEDDDFCMQPDTS 489

Query: 362 -YAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIREASGTKQSWNKWENHSTAPKQSW 421
            Y EDGSL+ ++S+L+D++ V+  +S   E     + E                 P QS 
Sbjct: 490 LYKEDGSLEIEFSALLDVRSVKTSSSDSAEVAKSALPE-----------------PDQS- 549

Query: 422 NKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWDEILQAFGAKKAKL 434
                   K PK S  K E +T  +    NG+ + W+E+ +A  AKKA L
Sbjct: 550 -------AKKPKLSANK-ELQTPAK---ENGEVSPWEELSEALSAKKAAL 567

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy Swiss-Prot
Match: Q09003 (Coilin OS=Xenopus laevis OX=8355 GN=coil PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 9.3e-06
Identity = 25/108 (23.15%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 250 DFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMVIPVPE-- 309
           D+  L   A+ P+ G +IA++L+E+S  +TPE+S ++ GK+L   P   +I +  + +  
Sbjct: 425 DYSSLPLLAAAPQVGKLIAFKLLEVSENYTPEVSEYKEGKILSFDPVTKQIEMEIISQQT 484

Query: 310 ------YPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNS 350
                 +  VY++   ++ +++   ++  +  ++++LI+ +++  K S
Sbjct: 485 MRKPGKFDVVYQSEDGEDIVEYAVPQESKVMLNWNTLIEPRLLMEKES 532

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy Swiss-Prot
Match: Q5SU73 (Coilin OS=Mus musculus OX=10090 GN=Coil PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-04
Identity = 38/165 (23.03%), Postives = 79/165 (47.88%), Query Frame = 0


Query: 199 DIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKKGLSTMN----------PP 258
           D++   G+  + VR RG+ +  +  S   N   +S K +    + T +          P 
Sbjct: 397 DLLFGKGLRGRGVRGRGRGRGQA-VSCVFNRSSESQKQRQLNDILTNSSVVIQNPVEPPK 456

Query: 259 IDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMV-----I 318
            D+  L   A+ P+ G+ IA++L+EL+S ++P++S ++ GK+L   PE  ++ +     +
Sbjct: 457 KDYSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHDPETQQVDIEVLSSL 516

Query: 319 PVPEYP----FVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIV 345
           P  + P     VY      E +++   ++  +   +  LID +++
Sbjct: 517 PALKEPGKFDLVYHNENGTEVVEYAVTQEKRITVLWRELIDPRLI 560

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy Swiss-Prot
Match: P38432 (Coilin OS=Homo sapiens OX=9606 GN=COIL PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-04
Identity = 33/147 (22.45%), Postives = 68/147 (46.26%), Query Frame = 0


Query: 212 RNRGQRKSSSWTSNCKNCEGQSSKPQAKKGLSTMNPPI-----DFDKLKPCASLPERGDI 271
           R RG   S     +  N   Q      K   + +  P+     D+  L   A+ P+ G+ 
Sbjct: 417 RGRGHPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEK 476

Query: 272 IAYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMV-----IPVPEYP----FVYKAAMN 331
           IA++L+EL+S+++P++S ++ G++L   PE  ++ +     +P    P     VY     
Sbjct: 477 IAFKLLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENG 536

Query: 332 DESIKHPYAEDGSLKTDYSSLIDIKIV 345
            E +++   ++  +   +  LID +++
Sbjct: 537 AEVVEYAVTQESKITVFWKELIDPRLI 563

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL
Match: A0A0A0LQQ3 (Coilin OS=Cucumis sativus OX=3659 GN=Csa_2G349650 PE=3 SV=1)

HSP 1 Score: 890.2 bits (2299), Expect = 3.6e-255
Identity = 450/453 (99.34%), Postives = 452/453 (99.78%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDKR 120
           VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSP+KDKR
Sbjct: 161 VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPDKDKR 220

Query: 121 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRFL 180
           KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDD+EIVPVVIRPGHVRFL
Sbjct: 221 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDKEIVPVVIRPGHVRFL 280

Query: 181 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 240
           PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK
Sbjct: 281 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 340

Query: 241 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 300
           GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI
Sbjct: 341 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 400

Query: 301 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 360
           MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR
Sbjct: 401 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 460

Query: 361 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWD 420
           EASGTKQSWNKWENHSTAPKQSWNKLGENHPK PKQSWKKWEDRTSVRVISGNGKENGWD
Sbjct: 461 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKPPKQSWKKWEDRTSVRVISGNGKENGWD 520

Query: 421 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP
Sbjct: 521 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 553

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL
Match: A0A1S3BA97 (Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1)

HSP 1 Score: 820.1 bits (2117), Expect = 4.6e-234
Identity = 418/455 (91.87%), Postives = 430/455 (94.51%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QKLQKFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKLQKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQAEANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQAEANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVRVISGN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVRVISGNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 555

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL
Match: A0A5A7V5I3 (Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001890 PE=3 SV=1)

HSP 1 Score: 816.2 bits (2107), Expect = 6.7e-233
Identity = 416/455 (91.43%), Postives = 428/455 (94.07%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QK  KFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKASKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQAEANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQAEANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVRVISGN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVRVISGNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 555

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL
Match: A0A1S3BAZ0 (Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1)

HSP 1 Score: 813.9 bits (2101), Expect = 3.3e-232
Identity = 417/455 (91.65%), Postives = 429/455 (94.29%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QKLQKFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKLQKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQ EANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQ-EANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVRVISGN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVRVISGNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 554

[Close]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL
Match: A0A1S3BB08 (Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1)

HSP 1 Score: 809.7 bits (2090), Expect = 6.3e-231
Identity = 415/455 (91.21%), Postives = 427/455 (93.85%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QKLQKFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKLQKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQAEANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQAEANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVR   GN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVR---GNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 552

[Close]

BLAST of CSPI02G17420.2 vs. NCBI nr
Match: XP_011649500.1 (coilin isoform X1 [Cucumis sativus] >XP_031736693.1 coilin isoform X1 [Cucumis sativus] >XP_031736694.1 coilin isoform X1 [Cucumis sativus] >KGN62331.1 hypothetical protein Csa_018708 [Cucumis sativus])

HSP 1 Score: 890.2 bits (2299), Expect = 7.5e-255
Identity = 450/453 (99.34%), Postives = 452/453 (99.78%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDKR 120
           VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSP+KDKR
Sbjct: 161 VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPDKDKR 220

Query: 121 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRFL 180
           KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDD+EIVPVVIRPGHVRFL
Sbjct: 221 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDKEIVPVVIRPGHVRFL 280

Query: 181 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 240
           PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK
Sbjct: 281 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 340

Query: 241 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 300
           GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI
Sbjct: 341 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 400

Query: 301 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 360
           MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR
Sbjct: 401 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 460

Query: 361 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWD 420
           EASGTKQSWNKWENHSTAPKQSWNKLGENHPK PKQSWKKWEDRTSVRVISGNGKENGWD
Sbjct: 461 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKPPKQSWKKWEDRTSVRVISGNGKENGWD 520

Query: 421 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP
Sbjct: 521 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 553

[Close]

BLAST of CSPI02G17420.2 vs. NCBI nr
Match: XP_011649501.1 (coilin isoform X2 [Cucumis sativus])

HSP 1 Score: 884.0 bits (2283), Expect = 5.4e-253
Identity = 449/453 (99.12%), Postives = 451/453 (99.56%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDKR 120
           VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSP+KDKR
Sbjct: 161 VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPDKDKR 220

Query: 121 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRFL 180
           KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDD+EIVPVVIRPGHVRFL
Sbjct: 221 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDKEIVPVVIRPGHVRFL 280

Query: 181 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 240
           PLGQ EANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK
Sbjct: 281 PLGQ-EANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 340

Query: 241 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 300
           GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI
Sbjct: 341 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 400

Query: 301 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 360
           MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR
Sbjct: 401 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 460

Query: 361 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWD 420
           EASGTKQSWNKWENHSTAPKQSWNKLGENHPK PKQSWKKWEDRTSVRVISGNGKENGWD
Sbjct: 461 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKPPKQSWKKWEDRTSVRVISGNGKENGWD 520

Query: 421 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP
Sbjct: 521 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 552

[Close]

BLAST of CSPI02G17420.2 vs. NCBI nr
Match: XP_004143057.1 (coilin isoform X3 [Cucumis sativus])

HSP 1 Score: 879.8 bits (2272), Expect = 1.0e-251
Identity = 447/453 (98.68%), Postives = 449/453 (99.12%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDKR 120
           VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSP+KDKR
Sbjct: 161 VVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPDKDKR 220

Query: 121 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRFL 180
           KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDD+EIVPVVIRPGHVRFL
Sbjct: 221 KMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDKEIVPVVIRPGHVRFL 280

Query: 181 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 240
           PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK
Sbjct: 281 PLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKK 340

Query: 241 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 300
           GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI
Sbjct: 341 GLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANKI 400

Query: 301 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 360
           MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR
Sbjct: 401 MVIPVPEYPFVYKAAMNDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIR 460

Query: 361 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWD 420
           EASGTKQSWNKWENHSTAPKQSWNKLGENHPK PKQSWKKWEDRTSVR   GNGKENGWD
Sbjct: 461 EASGTKQSWNKWENHSTAPKQSWNKLGENHPKPPKQSWKKWEDRTSVR---GNGKENGWD 520

Query: 421 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP
Sbjct: 521 EILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 550

[Close]

BLAST of CSPI02G17420.2 vs. NCBI nr
Match: XP_008444385.1 (PREDICTED: coilin-like isoform X1 [Cucumis melo])

HSP 1 Score: 820.1 bits (2117), Expect = 9.6e-234
Identity = 418/455 (91.87%), Postives = 430/455 (94.51%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QKLQKFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKLQKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQAEANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQAEANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVRVISGN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVRVISGNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 555

[Close]

BLAST of CSPI02G17420.2 vs. NCBI nr
Match: KAA0061051.1 (coilin-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 816.2 bits (2107), Expect = 1.4e-232
Identity = 416/455 (91.43%), Postives = 428/455 (94.07%), Query Frame = 0


Query: 1   MEELVNKCTDYKNEADAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 60
           MEELVNKCTDYKNEADAVDEPY+LLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR
Sbjct: 101 MEELVNKCTDYKNEADAVDEPYDLLRQLEDTLDAGSVKKTLSSKRKALKTLHSSKMKKKR 160

Query: 61  VVPTSKYLKFRTEHNGRFQHKV-LSEKSLVEKHKSSSGHTDTSISNEQKLQKFSSPEKDK 120
           VVPTSKYLKFR EHNGRFQHKV LSEK L++KHK S+GHTD S+SN+QK  KFSSPEKDK
Sbjct: 161 VVPTSKYLKFRAEHNGRFQHKVFLSEKRLIKKHKPSNGHTDASVSNKQKASKFSSPEKDK 220

Query: 121 RKMMRKQVKTKKKKVQQQRVEKSNRKLPDENYIEDSEQLAGSSDDEEIVPVVIRPGHVRF 180
           R+MMRKQVKT+KKKVQQQRVEKSN KLPDENY+EDSEQLAGSSDDEEIVPVVIRPGHVRF
Sbjct: 221 RQMMRKQVKTRKKKVQQQRVEKSNNKLPDENYVEDSEQLAGSSDDEEIVPVVIRPGHVRF 280

Query: 181 LPLGQAEANQIVHPGQASMDIIRLNGMAVKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAK 240
           LPLGQAEANQIVHP QASMD IRLNGMAVKNVRNRGQRKSSSWTSNC NCEGQSSKPQA+
Sbjct: 281 LPLGQAEANQIVHPAQASMDTIRLNGMAVKNVRNRGQRKSSSWTSNCNNCEGQSSKPQAE 340

Query: 241 KGLSTMNPPIDFDKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 300
           KGLSTMN PIDF+KLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK
Sbjct: 341 KGLSTMNRPIDFNKLKPCASLPERGDIIAYRLIELSSTWTPELSSFRVGKVLWCKPEANK 400

Query: 301 IMVIPVPEYPFVYKAAMN-DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGN 360
           IMVIPVPEYPFVYK AMN DESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFE  AGN
Sbjct: 401 IMVIPVPEYPFVYKKAMNDDESIKHPYAEDGSLKTDYSSLIDIKIVEHKNSVGFEEAAGN 460

Query: 361 IREASGTKQSWNKWENHSTAPKQSWNKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENG 420
           IREASG KQSWNKWENHST PKQSWNK GENHPK PKQSWKKW+D TSVRVISGN KEN 
Sbjct: 461 IREASGAKQSWNKWENHSTTPKQSWNKWGENHPKPPKQSWKKWKDSTSVRVISGNVKENA 520

Query: 421 WDEILQAFGAKKAKLCNEVRWRTGENKAWEGAHDP 454
           WDEILQAF AKKA L NEVRWRTGE KAWEGAHDP
Sbjct: 521 WDEILQAFSAKKANLSNEVRWRTGEKKAWEGAHDP 555

[Close]

BLAST of CSPI02G17420.2 vs. TAIR 10
Match: AT1G13030.1 (sphere organelles protein-related )

HSP 1 Score: 115.9 bits (289), Expect = 8.3e-26
Identity = 123/470 (26.17%), Postives = 219/470 (46.60%), Query Frame = 0


Query: 2   EELVNKCTDYKNEA---DAVDEPYELLRQLEDTLDAGSVKKTLSSKRKALK--------- 61
           EE   +   Y++E+   +  +E  E + + + +    +  K  S+KRK  K         
Sbjct: 130 EEFQKETGGYESESEEDELEEEAEEFVPEKKASKKRKTSSKNQSTKRKKCKLDTTEESPD 189

Query: 62  -----TLHSSKMKKKRVVPTSKYLKFRTEHNGRFQHKVLSEKSLVEKHKSSSGHTD---T 121
                 + S+ +KKK+   +        +       K +++     + + S  H D    
Sbjct: 190 ERENTAVVSNVVKKKKKKKSLDVQSANNDEQNNDSTKPMTKSKRSSQQEESKEHNDLCQL 249

Query: 122 SISNEQKLQKFSSPEKDKRKMMRKQVKTKKKKVQQQRVEKSNRKLP---------DENYI 181
           S   ++   + +  +K KR+ +R++ K +K+++ Q ++  +  + P          E + 
Sbjct: 250 SAETKKTPSRSARRKKAKRQWLREKTKLEKEELLQTQLVVAPSQKPVITIDHQATKEKHC 309

Query: 182 E--DSEQLAGSSD--DEEIVPVVIRPGHVRFLPL-GQAEANQIVHPGQASMDIIRLNGMA 241
           E  +++Q    SD   +E+VPV +RPGH+RF PL G  EA+    P    ++ +  NG  
Sbjct: 310 ETLENQQAEEVSDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDSEP---LVENVLWNGNM 369

Query: 242 VKNVRNRGQRKSSSWTSNCKNCEGQSSKPQAKKGLSTMNPPIDFDKLKPCASLPERGDII 301
            K    +   + S ++        + +  Q  +  +  N PID+++L       ++GD+I
Sbjct: 370 TKKKGQKWGTEKSGFSKRYAQDFNEDATTQPAEAETLANCPIDYEQLVAYTGSVKKGDVI 429

Query: 302 AYRLIELSSTWTPELSSFRVGKVLWCKPEANKIMVIPVPEYPFVYKAAMNDESIKHP--- 361
           AYRLIEL+S+WTPE+SSFRVGK+ +  P++  + ++PV E+P   K   +D+    P   
Sbjct: 430 AYRLIELTSSWTPEVSSFRVGKISYYDPDSKMVTLMPVQEFPIEKKTEEDDDFCMQPDTS 489

Query: 362 -YAEDGSLKTDYSSLIDIKIVEHKNSVGFEATAGNIREASGTKQSWNKWENHSTAPKQSW 421
            Y EDGSL+ ++S+L+D++ V+  +S   E     + E                 P QS 
Sbjct: 490 LYKEDGSLEIEFSALLDVRSVKTSSSDSAEVAKSALPE-----------------PDQS- 549

Query: 422 NKLGENHPKAPKQSWKKWEDRTSVRVISGNGKENGWDEILQAFGAKKAKL 434
                   K PK S  K E +T  +    NG+ + W+E+ +A  AKKA L
Sbjct: 550 -------AKKPKLSANK-ELQTPAK---ENGEVSPWEELSEALSAKKAAL 567

The following BLAST results are available for this feature:

BLAST of CSPI02G17420.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWK8	1.2e-24	26.17	Coilin OS=Arabidopsis thaliana OX=3702 GN=COIL PE=1 SV=1	[more]
Q09003	9.3e-06	23.15	Coilin OS=Xenopus laevis OX=8355 GN=coil PE=2 SV=2	[more]
Q5SU73	1.3e-04	23.03	Coilin OS=Mus musculus OX=10090 GN=Coil PE=1 SV=1	[more]
P38432	3.9e-04	22.45	Coilin OS=Homo sapiens OX=9606 GN=COIL PE=1 SV=1	[more]

BLAST of CSPI02G17420.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ3	3.6e-255	99.34	Coilin OS=Cucumis sativus OX=3659 GN=Csa_2G349650 PE=3 SV=1	[more]
A0A1S3BA97	4.6e-234	91.87	Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1	[more]
A0A5A7V5I3	6.7e-233	91.43	Coilin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001890 PE=3 S...	[more]
A0A1S3BAZ0	3.3e-232	91.65	Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1	[more]
A0A1S3BB08	6.3e-231	91.21	Coilin OS=Cucumis melo OX=3656 GN=LOC103487728 PE=3 SV=1	[more]

BLAST of CSPI02G17420.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649500.1	7.5e-255	99.34	coilin isoform X1 [Cucumis sativus] >XP_031736693.1 coilin isoform X1 [Cucumis s...	[more]
XP_011649501.1	5.4e-253	99.12	coilin isoform X2 [Cucumis sativus]	[more]
XP_004143057.1	1.0e-251	98.68	coilin isoform X3 [Cucumis sativus]	[more]
XP_008444385.1	9.6e-234	91.87	PREDICTED: coilin-like isoform X1 [Cucumis melo]	[more]
KAA0061051.1	1.4e-232	91.43	coilin-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G17420.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13030.1	8.3e-26	26.17	sphere organelles protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..384
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..241
None	No IPR available	PANTHER	PTHR15197:SF0	COILIN	coord: 20..445
IPR024822	Coilin	PANTHER	PTHR15197	COILIN P80	coord: 20..445

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G17420	CSPI02G17420	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G17420.2.utr5p1	CSPI02G17420.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G17420.2.cds1	CSPI02G17420.2.cds1	CDS
CSPI02G17420.2.cds2	CSPI02G17420.2.cds2	CDS
CSPI02G17420.2.cds3	CSPI02G17420.2.cds3	CDS
CSPI02G17420.2.cds4	CSPI02G17420.2.cds4	CDS
CSPI02G17420.2.cds5	CSPI02G17420.2.cds5	CDS
CSPI02G17420.2.cds6	CSPI02G17420.2.cds6	CDS
CSPI02G17420.2.cds7	CSPI02G17420.2.cds7	CDS
CSPI02G17420.2.cds8	CSPI02G17420.2.cds8	CDS
CSPI02G17420.2.cds9	CSPI02G17420.2.cds9	CDS
CSPI02G17420.2.cds10	CSPI02G17420.2.cds10	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G17420.2.utr3p1	CSPI02G17420.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G17420.2	CSPI02G17420.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0015030	Cajal body
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0030620	U2 snRNA binding