Bhi12M001340 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi12M001340
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	F-box/WD repeat-containing protein sel-10-like
Location	chr12: 49563213 .. 49563404 (+)
Sequence length	192
RNA-Seq Expression	Bhi12M001340
Synteny	Bhi12M001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

mRNA sequence

ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

Coding sequence (CDS)

ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

Protein sequence

MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKEDKNLKILKLYEIALSCLLF

Homology

[Close]

BLAST of Bhi12M001340 vs. NCBI nr
Match: XP_038897273.1 (protein JINGUBANG-like [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 9.8e-12
Identity = 39/59 (66.10%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKY--KKEDKNLKILKLYEIA 58
           M+KMET+VLVY+GSLD+TFKVWR+KV LGHNDQ +  LL+Y  ++ED+NLK+ KLYE++
Sbjct: 264 MNKMETNVLVYSGSLDQTFKVWRVKVYLGHNDQYQKELLEYEEEEEDENLKMKKLYEMS 322

[Close]

BLAST of Bhi12M001340 vs. NCBI nr
Match: XP_008466650.1 (PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKE--DKNLKILKLYE 56
           M+KMETSVLVY+GSLD+TFKVW +KV L HN+Q+K  L++Y++E  +++LK+ KLYE
Sbjct: 71  MNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYE 127

[Close]

BLAST of Bhi12M001340 vs. ExPASy TrEMBL
Match: A0A1S3CRS7 (F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103504006 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.9e-10
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKE--DKNLKILKLYE 56
           M+KMETSVLVY+GSLD+TFKVW +KV L HN+Q+K  L++Y++E  +++LK+ KLYE
Sbjct: 71  MNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYE 127

The following BLAST results are available for this feature:

BLAST of Bhi12M001340 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12M001340 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12M001340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897273.1	9.8e-12	66.10	protein JINGUBANG-like [Benincasa hispida]	[more]
XP_008466650.1	2.0e-09	61.40	PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo]	[more]

BLAST of Bhi12M001340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRS7	9.9e-10	61.40	F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G001340	Bhi12G001340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M001340.exon1	Bhi12M001340.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M001340	cds.Bhi12M001340	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M001340	Bhi12M001340-protein	polypeptide