Bhi12M000305 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi12M000305
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	nucleolar complex protein 4 homolog
Location	chr12: 9731804 .. 9731965 (+)
Sequence length	162
RNA-Seq Expression	Bhi12M000305
Synteny	Bhi12M000305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

mRNA sequence

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Coding sequence (CDS)

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Protein sequence

LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQDSA

Homology

[Close]

BLAST of Bhi12M000305 vs. TAIR 10
Match: AT2G17250.1 (CCAAT-binding factor )

HSP 1 Score: 46.6 bits (109), Expect = 7.2e-06
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSF 32
           +++++K+VPLAFY+  PT+LF +SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]

BLAST of Bhi12M000305 vs. ExPASy Swiss-Prot
Match: F4IMH3 (Protein NUCLEOLAR COMPLEX ASSOCIATED 4 OS=Arabidopsis thaliana OX=3702 GN=NOC4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSF 32
           +++++K+VPLAFY+  PT+LF +SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]

BLAST of Bhi12M000305 vs. NCBI nr
Match: XP_038887733.1 (protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQ PPTTLF ESDFAGWSF+HEHSEKNI+GSDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQTPPTTLFSESDFAGWSFNHEHSEKNIDGSDHLSAKR 595

[Close]

BLAST of Bhi12M000305 vs. NCBI nr
Match: XP_038887732.1 (protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQ PPTTLF ESDFAGWSF+HEHSEKNI+GSDHLS K+
Sbjct: 552 LKKKLKRVPLAFYQTPPTTLFSESDFAGWSFNHEHSEKNIDGSDHLSAKR 601

[Close]

BLAST of Bhi12M000305 vs. NCBI nr
Match: XP_011658634.1 (nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical protein Csa_020378 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 5.5e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]

BLAST of Bhi12M000305 vs. NCBI nr
Match: XP_008447831.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]

BLAST of Bhi12M000305 vs. NCBI nr
Match: TYK23279.1 (nucleolar complex protein 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 547 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 597

[Close]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL
Match: A0A0A0K685 (CBF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL
Match: A0A5D3DJ82 (Nucleolar complex protein 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003360 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 547 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 597

[Close]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL
Match: A0A1S3BIC0 (nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL
Match: A0A6J1HZT8 (nucleolar complex protein 4 homolog B OS=Cucurbita maxima OX=3661 GN=LOC111468149 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PT+LF ESDF GWSF+HEHSEKNI+GSDHL  K+
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSESDFPGWSFNHEHSEKNIDGSDHLPAKR 599

[Close]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL
Match: A0A6J1C6T4 (nucleolar complex protein 4 homolog OS=Momordica charantia OX=3673 GN=LOC111007905 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PTTLF ESDF GWSFDH+HSE NI+ SDHLS K+
Sbjct: 543 LKKKMKRVPLAFYQAIPTTLFSESDFTGWSFDHKHSENNIDDSDHLSAKR 592

The following BLAST results are available for this feature:

BLAST of Bhi12M000305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17250.1	7.2e-06	54.84	CCAAT-binding factor	[more]

BLAST of Bhi12M000305 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IMH3	1.0e-04	54.84	Protein NUCLEOLAR COMPLEX ASSOCIATED 4 OS=Arabidopsis thaliana OX=3702 GN=NOC4 P...	[more]

BLAST of Bhi12M000305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887733.1	1.9e-16	88.00	protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X2 [Benincasa hispida]	[more]
XP_038887732.1	1.9e-16	88.00	protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X1 [Benincasa hispida]	[more]
XP_011658634.1	5.5e-16	88.00	nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical p...	[more]
XP_008447831.1	1.4e-14	84.31	PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo]	[more]
TYK23279.1	1.4e-14	84.31	nucleolar complex protein 4-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Bhi12M000305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K685	2.7e-16	88.00	CBF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=3 SV...	[more]
A0A5D3DJ82	6.6e-15	84.31	Nucleolar complex protein 4-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BIC0	6.6e-15	84.31	nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=3...	[more]
A0A6J1HZT8	3.3e-14	80.00	nucleolar complex protein 4 homolog B OS=Cucurbita maxima OX=3661 GN=LOC11146814...	[more]
A0A6J1C6T4	4.3e-14	80.00	nucleolar complex protein 4 homolog OS=Momordica charantia OX=3673 GN=LOC1110079...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi12G000305	Bhi12G000305	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi12M000305.exon1	Bhi12M000305.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi12M000305	cds.Bhi12M000305	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi12M000305	Bhi12M000305-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016020	membrane
cellular_component	GO:0030692	Noc4p-Nop14p complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0032040	small-subunit processome