Bhi12G000305 (gene) Wax gourd (B227) v1

Overview
NameBhi12G000305
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionnucleolar complex protein 4 homolog
Locationchr12: 9731804 .. 9731965 (+)
RNA-Seq ExpressionBhi12G000305
SyntenyBhi12G000305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

mRNA sequence

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Coding sequence (CDS)

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Protein sequence

LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQDSA
Homology
[Close]
BLAST of Bhi12G000305 vs. TAIR 10
Match: AT2G17250.1 (CCAAT-binding factor )

HSP 1 Score: 46.6 bits (109), Expect = 7.2e-06
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSF 32
           +++++K+VPLAFY+  PT+LF +SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]
BLAST of Bhi12G000305 vs. ExPASy Swiss-Prot
Match: F4IMH3 (Protein NUCLEOLAR COMPLEX ASSOCIATED 4 OS=Arabidopsis thaliana OX=3702 GN=NOC4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSF 32
           +++++K+VPLAFY+  PT+LF +SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_038887733.1 (protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQ PPTTLF ESDFAGWSF+HEHSEKNI+GSDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQTPPTTLFSESDFAGWSFNHEHSEKNIDGSDHLSAKR 595

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_038887732.1 (protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQ PPTTLF ESDFAGWSF+HEHSEKNI+GSDHLS K+
Sbjct: 552 LKKKLKRVPLAFYQTPPTTLFSESDFAGWSFNHEHSEKNIDGSDHLSAKR 601

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_011658634.1 (nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical protein Csa_020378 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 5.5e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_008447831.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: TYK23279.1 (nucleolar complex protein 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 547 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 597

[Close]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match: A0A0A0K685 (CBF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match: A0A5D3DJ82 (Nucleolar complex protein 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003360 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 547 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 597

[Close]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match: A0A1S3BIC0 (nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.6e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match: A0A6J1HZT8 (nucleolar complex protein 4 homolog B OS=Cucurbita maxima OX=3661 GN=LOC111468149 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PT+LF ESDF GWSF+HEHSEKNI+GSDHL  K+
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSESDFPGWSFNHEHSEKNIDGSDHLPAKR 599

[Close]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match: A0A6J1C6T4 (nucleolar complex protein 4 homolog OS=Momordica charantia OX=3673 GN=LOC111007905 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PTTLF ESDF GWSFDH+HSE NI+ SDHLS K+
Sbjct: 543 LKKKMKRVPLAFYQAIPTTLFSESDFTGWSFDHKHSENNIDDSDHLSAKR 592

The following BLAST results are available for this feature:
BLAST of Bhi12G000305 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G17250.17.2e-0654.84CCAAT-binding factor [more]
BLAST of Bhi12G000305 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IMH31.0e-0454.84Protein NUCLEOLAR COMPLEX ASSOCIATED 4 OS=Arabidopsis thaliana OX=3702 GN=NOC4 P... [more]
BLAST of Bhi12G000305 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887733.11.9e-1688.00protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X2 [Benincasa hispida][more]
XP_038887732.11.9e-1688.00protein NUCLEOLAR COMPLEX ASSOCIATED 4 isoform X1 [Benincasa hispida][more]
XP_011658634.15.5e-1688.00nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical p... [more]
XP_008447831.11.4e-1484.31PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo][more]
TYK23279.11.4e-1484.31nucleolar complex protein 4-like protein [Cucumis melo var. makuwa][more]
BLAST of Bhi12G000305 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6852.7e-1688.00CBF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=3 SV... [more]
A0A5D3DJ826.6e-1584.31Nucleolar complex protein 4-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BIC06.6e-1584.31nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=3... [more]
A0A6J1HZT83.3e-1480.00nucleolar complex protein 4 homolog B OS=Cucurbita maxima OX=3661 GN=LOC11146814... [more]
A0A6J1C6T44.3e-1480.00nucleolar complex protein 4 homolog OS=Momordica charantia OX=3673 GN=LOC1110079... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000305Bhi12M000305mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006364 rRNA processing
cellular_component GO:0016020 membrane
cellular_component GO:0030692 Noc4p-Nop14p complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0032040 small-subunit processome