Bhi11M000516 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi11M000516
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ubiquitin family protein
Location	chr11: 15139505 .. 15139753 (-)
Sequence length	249
RNA-Seq Expression	Bhi11M000516
Synteny	Bhi11M000516

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

mRNA sequence

ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

Coding sequence (CDS)

ATGGAAATGCAGATGCTGATCTTTGTGAATACGTTAGATGGAAAGAGTAGAATTTCTATAGACGTTGGATCAATGGATACGATTGCGGCTGTAAAGGCTACAATCAAATCCCATAAGATCATACCTATTGAGTCTCAGAAGCTGATTTATGCTGGAAAGACCCTCGAAGATCATCAAACTTTAGCACATTATAACATCCTCGATGATTCTATTTTGTATTTGGTTTTTCGTCTTCATGGTGGTTTTTAA

Protein sequence

MEMQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNILDDSILYLVFRLHGGF

Homology

[Close]

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

[Close]

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 153 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 212

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 213 NIQKESTLHLVLRLRGGF 229

[Close]

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 153 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 212

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 213 NIQKESTLHLVLRLRGGF 229

[Close]

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.3 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

[Close]

BLAST of Bhi11M000516 vs. TAIR 10
Match: AT4G05320.4 (polyubiquitin 10 )

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

[Close]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P0CG85 (Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 381 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 440

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 441 NIQKESTLHLVLRLRGGF 457

[Close]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P0CG84 (Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 301 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 360

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 361 NIQKESTLHLVLRLRGGF 377

[Close]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69322 (Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

[Close]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69325 (Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 229 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 288

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 289 NIQKESTLHLVLRLRGGF 305

[Close]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot
Match: P69313 (Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 5  MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
          M IFV TL GK+ I+++V S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA Y
Sbjct: 1  MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 60

Query: 65 NILDDSILYLVFRLHGGF 83
          NI  +S L+LV RL GGF
Sbjct: 61 NIQKESTLHLVLRLRGGF 77

[Close]

BLAST of Bhi11M000516 vs. NCBI nr
Match: CEP02084.1 (hypothetical protein PBRA_002349 [Plasmodiophora brassicae] >SPQ93723.1 unnamed protein product [Plasmodiophora brassicae])

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI AVKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MSMQIFVKTLTGKT-ITLDVASSDTIEAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

[Close]

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAF8722539.1 (hypothetical protein HU200_022367 [Digitaria exilis])

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-12
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 2   EMQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTL 61
           E +M IFV TL GK+ I+++V S DT+A VKA ++  + IP + Q+LI+AGK LED +TL
Sbjct: 189 EFKMQIFVKTLTGKT-ITLEVESSDTVANVKAKVQDKEGIPPDQQRLIFAGKQLEDERTL 248

Query: 62  AHYNILDDSILYLVFRLHGG 82
           A YNI  +S L+LV RL GG
Sbjct: 249 ADYNIQKESTLHLVLRLRGG 267

[Close]

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAG9446958.1 (hypothetical protein H6P81_013086 [Aristolochia fimbriata])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 5  MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
          M IFV TL GK+ I+++V S DTI  VKA IK  + IP + Q+LI+AGK LED QTLA Y
Sbjct: 1  MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIKDKEGIPPDQQRLIFAGKQLEDGQTLADY 60

Query: 65 NILDDSILYLVFRLHGG 82
          NI  DS L+LV RL GG
Sbjct: 61 NIQKDSTLHLVLRLRGG 76

[Close]

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAG2642985.1 (hypothetical protein PVAP13_2KG291900 [Panicum virgatum])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 4   QMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAH 63
           +M IFV TL GK+ ++++V S DT+A VKA I+  + IP E Q+LI+AGK LED +TLA 
Sbjct: 72  EMQIFVKTLTGKT-VTLEVDSSDTVANVKAKIQDKEGIPPEQQRLIFAGKQLEDERTLAG 131

Query: 64  YNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 132 YNIQKESTLHLVLRLRGG 148

[Close]

BLAST of Bhi11M000516 vs. NCBI nr
Match: KAA0025488.1 (putative ubiquitin C variant 1 [Cucumis melo var. makuwa] >TYK00377.1 putative ubiquitin C variant 1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 7  IFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNI 66
          +FV T DG+ + S++V   DTIA VK  +++   +P +SQ+L++ GKTLEDH+ L HYNI
Sbjct: 1  MFVRTFDGE-KFSLEVEPTDTIADVKDQMEALNEVPSDSQRLLFGGKTLEDHKALEHYNI 60

Query: 67 LDDSILYLVFRLHGG 82
            DS LYL+FR++GG
Sbjct: 61 EKDSTLYLIFRVYGG 74

[Close]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4J3X7 (Ubiquitin-like domain-containing protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_002349 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI AVKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MSMQIFVKTLTGKT-ITLDVASSDTIEAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

[Close]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A5D3BMG6 (Putative ubiquitin C variant 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00430 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.1e-12
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 7  IFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHYNI 66
          +FV T DG+ + S++V   DTIA VK  +++   +P +SQ+L++ GKTLEDH+ L HYNI
Sbjct: 1  MFVRTFDGE-KFSLEVEPTDTIADVKDQMEALNEVPSDSQRLLFGGKTLEDHKALEHYNI 60

Query: 67 LDDSILYLVFRLHGG 82
            DS LYL+FR++GG
Sbjct: 61 EKDSTLYLIFRVYGG 74

[Close]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A1Q3B9A7 (Ubiquitin domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07952 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.1e-12
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 5   MLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLAHY 64
           M IFV TL GK+ I+++V S DTI  VKA I+  + IP++ Q+LI+AGK LED +TLA Y
Sbjct: 305 MQIFVKTLTGKT-ITLEVESSDTIENVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADY 364

Query: 65  NILDDSILYLVFRLHGGF 83
           NI  +S L+LV RL GGF
Sbjct: 365 NIQKESTLHLVLRLRGGF 381

[Close]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4IGV5 (Ubiquitin OS=Plasmodiophora brassicae OX=37360 GN=PBRA_000236 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 11 MTMQIFVKTLTGKT-ITLDVDSGDTIETVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 70

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 71 DYNIQKESTLHLVLRLRGG 88

[Close]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL
Match: A0A0G4J149 (Uncharacterized protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_001954 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 3  MQMLIFVNTLDGKSRISIDVGSMDTIAAVKATIKSHKIIPIESQKLIYAGKTLEDHQTLA 62
          M M IFV TL GK+ I++DV S DTI  VKA I+  + IP + Q+LI+AGK LED +TLA
Sbjct: 1  MTMQIFVKTLTGKT-ITLDVDSGDTIETVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 60

Query: 63 HYNILDDSILYLVFRLHGG 82
           YNI  +S L+LV RL GG
Sbjct: 61 DYNIQKESTLHLVLRLRGG 78

The following BLAST results are available for this feature:

BLAST of Bhi11M000516 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05320.2	7.7e-15	56.41	polyubiquitin 10	[more]
AT4G02890.1	7.7e-15	56.41	Ubiquitin family protein	[more]
AT4G05050.1	7.7e-15	56.41	ubiquitin 11	[more]
AT4G05320.3	7.7e-15	56.41	polyubiquitin 10	[more]
AT4G05320.4	7.7e-15	56.41	polyubiquitin 10	[more]

BLAST of Bhi11M000516 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CG85	1.1e-13	56.41	Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1	[more]
P0CG84	1.1e-13	56.41	Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1	[more]
P69322	1.1e-13	56.41	Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2	[more]
P69325	1.1e-13	56.41	Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2	[more]
P69313	1.1e-13	56.41	Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2	[more]

BLAST of Bhi11M000516 vs. NCBI nr


Match Name	E-value	Identity	Description
CEP02084.1	2.6e-12	58.23	hypothetical protein PBRA_002349 [Plasmodiophora brassicae] >SPQ93723.1 unnamed ...	[more]
KAF8722539.1	9.8e-12	53.75	hypothetical protein HU200_022367 [Digitaria exilis]	[more]
KAG9446958.1	1.3e-11	59.74	hypothetical protein H6P81_013086 [Aristolochia fimbriata]	[more]
KAG2642985.1	1.3e-11	55.13	hypothetical protein PVAP13_2KG291900 [Panicum virgatum]	[more]
KAA0025488.1	1.7e-11	50.67	putative ubiquitin C variant 1 [Cucumis melo var. makuwa] >TYK00377.1 putative u...	[more]

BLAST of Bhi11M000516 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0G4J3X7	1.2e-12	58.23	Ubiquitin-like domain-containing protein OS=Plasmodiophora brassicae OX=37360 GN...	[more]
A0A5D3BMG6	8.1e-12	50.67	Putative ubiquitin C variant 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1Q3B9A7	8.1e-12	56.41	Ubiquitin domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v...	[more]
A0A0G4IGV5	1.1e-11	56.96	Ubiquitin OS=Plasmodiophora brassicae OX=37360 GN=PBRA_000236 PE=3 SV=1	[more]
A0A0G4J149	1.1e-11	56.96	Uncharacterized protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_001954 PE=4...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 16..36 score: 41.96 coord: 37..57 score: 50.59 coord: 58..79 score: 49.55
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 5..77 e-value: 2.8E-20 score: 83.4
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 7..78 e-value: 7.4E-22 score: 76.9
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 5..81 score: 21.415316
None	No IPR available	GENE3D	3.10.20.90		coord: 1..82 e-value: 1.5E-26 score: 94.1
None	No IPR available	PANTHER	PTHR10666:SF327	UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1	coord: 3..81
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 3..81
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 32..57
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 4..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi11G000516	Bhi11G000516	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi11M000516.exon1	Bhi11M000516.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi11M000516	cds.Bhi11M000516	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi11M000516	Bhi11M000516-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0031625	ubiquitin protein ligase binding