Bhi09M001169 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi09M001169
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Plant transposase
Location	chr9: 35637021 .. 35637182 (+)
Sequence length	162
RNA-Seq Expression	Bhi09M001169
Synteny	Bhi09M001169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAAAATCGATTGGAGCAAAATGTTGTTGAAGTTCATACAAAGCTATTGGGCACCAAGAAGATGAGAGGTCAGACAAAAATGCAAACAATAGCAATGGATCCAGAAATGAAATTAGATGTAAGATACAATGAATATGGACAGTCTATTGGACAAACATCG

mRNA sequence

GTTCAAAATCGATTGGAGCAAAATGTTGTTGAAGTTCATACAAAGCTATTGGGCACCAAGAAGATGAGAGGTCAGACAAAAATGCAAACAATAGCAATGGATCCAGAAATGAAATTAGATGTAAGATACAATGAATATGGACAGTCTATTGGACAAACATCG

Coding sequence (CDS)

GTTCAAAATCGATTGGAGCAAAATGTTGTTGAAGTTCATACAAAGCTATTGGGCACCAAGAAGATGAGAGGTCAGACAAAAATGCAAACAATAGCAATGGATCCAGAAATGAAATTAGATGTAAGATACAATGAATATGGACAGTCTATTGGACAAACATCG

Protein sequence

VQNRLEQNVVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS

Homology

[Close]

BLAST of Bhi09M001169 vs. ExPASy TrEMBL
Match: A0A5A7UBP2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00210 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   VQNRLEQN----VVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS 55
           V+++LE+N      EVHTK    KK RG+TKMQTIAM+PEMKLD+RYN YGQ IG+TS
Sbjct: 83  VESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQPIGETS 140

[Close]

BLAST of Bhi09M001169 vs. ExPASy TrEMBL
Match: A0A5A7TIU1 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002550 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   VQNRLEQN----VVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS 55
           V+++LE+N      EVHTK    KK RG+TKMQTIAM+PEMKLD+RYN YGQ IG+TS
Sbjct: 83  VESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQPIGETS 140

[Close]

BLAST of Bhi09M001169 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   VQNRLEQN----VVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS 55
           V+++LE+N      EVHTK    KK RG+TKMQTIAM+PEMKLD+RYN YGQ IG+TS
Sbjct: 83  VESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQPIGETS 140

[Close]

BLAST of Bhi09M001169 vs. ExPASy TrEMBL
Match: A0A5A7UNU1 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00350 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   VQNRLEQN----VVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS 55
           V+++LE+N      EVHTK    KK RG+TKMQTIAM+PEMKLD+RYN YGQ IG+TS
Sbjct: 83  VESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQPIGETS 140

[Close]

BLAST of Bhi09M001169 vs. ExPASy TrEMBL
Match: A0A5A7TLJ2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003690 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   VQNRLEQN----VVEVHTKLLGTKKMRGQTKMQTIAMDPEMKLDVRYNEYGQSIGQTS 55
           V+++LE+N      EVHTK    KK RG+TKMQTIAM+PEMKLD+RYN YGQ IG+TS
Sbjct: 83  VESQLEENENVDCEEVHTKEPSPKKTRGRTKMQTIAMEPEMKLDIRYNGYGQPIGETS 140

The following BLAST results are available for this feature:

BLAST of Bhi09M001169 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09M001169 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09M001169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBP2	1.1e-09	63.79	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G0...	[more]
A0A5A7TIU1	1.1e-09	63.79	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00...	[more]
A0A5A7SRN7	1.1e-09	63.79	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7UNU1	1.1e-09	63.79	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TLJ2	1.1e-09	63.79	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G001169	Bhi09G001169	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M001169.exon1	Bhi09M001169.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M001169	cds.Bhi09M001169	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M001169	Bhi09M001169-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane