Bhi05M000909 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi05M000909
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ADP-ribosylation factor-like protein 8b
Location	chr5: 37529600 .. 37532331 (+)
Sequence length	292
RNA-Seq Expression	Bhi05M000909
Synteny	Bhi05M000909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTTCTTGAAGCCCAATTTAGTTGCTATGTAACATCTTTTTTAATTTTTAGTTTATTTTTTCCCTGAAGGTCCTAATTTTATTTACTTTCTATTTCAGAATTGGCTCTCTGTAGGAGCATCATTATAATTTTATTCATTCAATTTGCATTTTCAAACACTGAAATTTTTATATAAAAATTTGTATTCTCAAAAGATTATTCAATAAAGAAATTGGATTTCAGTGAAATCCATGTGCAAGTATTACTATTTTATACCCTTTAGATCTAGACAGCTGCAAAGCTTGATTATTCTCAAGTTGTTTATACAGCAGTTGGTGCAGGCTAAGGAGAGGAGAAAAAGCCGTTGAAGTTATTCTCTAATGCAAGTTGTTTGAGAATTTCACCGAACCACACATCCTGATCACAAGTAAAACAACTTTAGAATGCTAAGATTTGGATATGCATCTTGATTAATTAAAACCTACATTTTCCGGTCCCATAACTAGAATTATTTTCCTGCTGGTTCGGTAGAAATATAAGGTAAAAGGGGATTAATGTTCAAGTCCTGATCTATGAAAACTATGGAGTAATGATTTACAGTGTCTAAAACCAATTCCACCATCCAAACTTGCAGCAACGTGAAACTAAGATACTTTATTCATATAGTTCTGTTGCTTATAAGGTGCATTTCCCCGTTTCTCCAAAAAAAAAAAAAAAAAAAAAGAGCATTTCCCTGCATGGCTGCATCCTTGACAATTGATAGTTTGCCTCTAGGGCAAGAAATATACAATAGCAAATGGCTTTCTTGGGAACTGTCTTTTCAGTTGAGTTTTTCCTTTGTACCCGTGACCTAGAGCAAACACAAAAAAGATAAAACTTAGAATGCCAACGTTCGTTTTGTAATTGGTATGGTTTGATTATTACCTACATTTCTGGTTTCCAAGAGGCACTGCCTGTCACTGCTTTCTACGAACCTTTCACAGTTTTACTCGTTTTAATGGATTGAATGGTCTTGCTGCATGTTGGGAATTGTTTTGTAAAATGGGATTTACATCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCCAAATGGGATTTACATCTAAATCTGTGAAAAGTTCTTTAAGTTTCTGTAATTTCCCTTTACAACTCGAGTACAAATGGGATTTACATCTTCTTCTTCTTCTCTCTCTCTCTCTCGAGTACAAATGGGATTTACATCTAAATCTGTGAAAAGTTCTTTTAGTTTCTGTAATTTCCCTTTACAACTCGAGTACAATTGGGATTTACATCTAAATCTGTGAAAAGTTCTTTTAAGTTTCTGTAATTTCCTTTTACTATTGTAAACTTAAAATTGTTTTATGCGTATTTAACTTGTGTGCCATTTTCAGCCTTGCTGACCTGCGGAACAGTTGCTTCTACCTCTCATAGGACTAATGGTAACAGGTGTGATTTGTGATACTGTGAATCACTTGGCCTATATATTTATGTTTTCTCTCTCCTATTTTTGGTGTTTTTTTTTTAATCTTTTAATCTCTCTCCTATAATAGTTCATTGATAATAAGATGTGGGAAAACGATAAAGAGAATAAATTGAGAACAAAAATGGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTAGACCAAATGCCCAATGTTGATGTTAGAAACAAACGTCAAACATTTAAAGTTTTAACTAAATGGAGATATATGGTTCTTGCTTTGACATCTTGCCTACTAATTGAATCAGCATTTTGCCTTTTAGCTTCTTTATGAACGAAATAATTCCCAGAAAGGAAAAATGTTGAAGAATAGTGGGGCATTTCAAATATTGAACTCAGGACCTCTTGCGCCCAAAGCAAGAATTACATAACACTAGACCAAGTGTCCTGCTTGAGGCTTTAGAATTCATAGTCTTGCTTGAGGCTTTAGAATTCATAGTCTTATTTAACATGCTTTCTTTTGTCCGTTTCTTTTTCTTCGGGCCTTATTATTGTCCAGTTTCTATTTCAAAATTGACTTTTTTTGTATTTTTAAACTCATTAGTGTTTGTTTGTTCCTTCCATGTGATCTGTCACAAACTGCAAAGTGATACTCAAATTGTTTGTATTTACTTGAGATTCATTACTACCGAATAGTGAGAAAAAAGAAAAAGTTATTATAGGGGTAGGCTAAAGTGTAATGAGAAAAGAAAGAACGGTAGAAGTTATTTCCTAATGTAAGTTGAAGGTGGAGAATTTCACTTGAACCGCACATTCTGAGCACAAATATATAAAATTTAGAATGTCAAGAATCAGATATGATTGTCTATTCATCATGATCATTTTTTGCCGTACTGATGTTCCATATGGTTATTCAGTGGGCTCACACTGCTGCTTGTTGAACAGTTCTAATACCCACGATCTCATATGTTTGAATTAGTATTGATTTTGATGGTGGTTTCTTGCGGTTGCTTTTATGGTAAAAAGGCACAATCATATGACTAAATTTATTAACATTTCTTGAATTTTAATGCAGTTTCCGTTCAGTTTAGCAAACTTGCTCTTGTCATGTTAACTAATAATTAAAGAATCTCTATGTGCCATTTTCAGCAATGGTGAACATTTGGTATGGTTGCTTCTATCTCTCAGAGAGACTGAGCGTAGAG

mRNA sequence

ATGGGAAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTTCTTGAAGCCCAATTTAGTTGCTATACAGCTGCAAAGCTTGATTATTCTCAAGTTGTTTATACAGCAGTTGGTGCAGGCTAAGGAGAGGAGAAAAAGCCCCTTGCTGACCTGCGGAACAGTTGCTTCTACCTCTCATAGGACTAATGGTAACAGCAATGGTGAACATTTGGTATGGTTGCTTCTATCTCTCAGAGAGACTGAGCGTAGAG

Coding sequence (CDS)

ATGGGAAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTTCTTGAAGCCCAATTTAGTTGCTATACAGCTGCAAAGCTTGATTATTCTCAAGTTGTTTATACAGCAGTTGGTGCAGGCTAAGGAGAGGAGAAAAAGCCCCTTGCTGACCTGCGGAACAGTTGCTTCTACCTCTCATAGGACTAATGGTAACAGCAATGGTGAACATTTGGTATGGTTGCTTCTATCTCTCAGAGAGACTGAGCGTAGAG

Protein sequence

MGKGAFRESNSGPLAPKARIIPLDQMPFLKPNLVAIQLQSLIILKLFIQQLVQAKERRKSPLLTCGTVASTSHRTNGNSNGEHLVWLLLSLRETERR

Homology

[Close]

BLAST of Bhi05M000909 vs. ExPASy TrEMBL
Match: A0A371I2L5 (ADP-ribosylation factor-like protein 8b (Fragment) OS=Mucuna pruriens OX=157652 GN=ARL8B PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 3   KGAFRESNSGPLAPKARIIPLDQMPFLK 31
           KGAFRESNSGPLAPKARIIPLDQMP LK
Sbjct: 227 KGAFRESNSGPLAPKARIIPLDQMPILK 254

[Close]

BLAST of Bhi05M000909 vs. ExPASy TrEMBL
Match: A0A371I2J6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06376 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3   KGAFRESNSGPLAPKARIIPLDQMPFLKPNLVAIQLQSLIILKLFI 49
           KGAFRESNSGPLAPKARIIPLDQMP LK   ++ ++   ++LK F+
Sbjct: 82  KGAFRESNSGPLAPKARIIPLDQMPTLKGRGLS-KVYDCLLLKSFM 126

[Close]

BLAST of Bhi05M000909 vs. ExPASy TrEMBL
Match: K7N3A2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G134800 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 4  GAFRESNSGPLAPKARIIPLDQMPFLK 31
          GAFRESNSGPLAPKARIIPLDQMP LK
Sbjct: 35 GAFRESNSGPLAPKARIIPLDQMPTLK 61

[Close]

BLAST of Bhi05M000909 vs. ExPASy TrEMBL
Match: A0A445F4J1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054015 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 4  GAFRESNSGPLAPKARIIPLDQMPFLK 31
          GAFRESNSGPLAPKARIIPLDQMP LK
Sbjct: 35 GAFRESNSGPLAPKARIIPLDQMPTLK 61

[Close]

BLAST of Bhi05M000909 vs. ExPASy TrEMBL
Match: A0A2G9FYS4 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29475 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 3  KGAFRESNSGPLAPKARIIPLDQMP 28
          KGAFRESNSGPLAPKARIIPLDQMP
Sbjct: 33 KGAFRESNSGPLAPKARIIPLDQMP 57

The following BLAST results are available for this feature:

BLAST of Bhi05M000909 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05M000909 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05M000909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371I2L5	3.0e-05	96.43	ADP-ribosylation factor-like protein 8b (Fragment) OS=Mucuna pruriens OX=157652 ...	[more]
A0A371I2J6	1.5e-04	65.22	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06376 P...	[more]
K7N3A2	1.9e-04	96.30	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G134800 PE=4 SV=1	[more]
A0A445F4J1	1.9e-04	96.30	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054015 PE=4 SV=1	[more]
A0A2G9FYS4	3.3e-04	100.00	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29475 P...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi05G000909	Bhi05G000909	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi05M000909.exon1	Bhi05M000909.exon1	exon
Bhi05M000909.exon2	Bhi05M000909.exon2	exon
Bhi05M000909.exon3	Bhi05M000909.exon3	exon
Bhi05M000909.exon4	Bhi05M000909.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi05M000909	cds.Bhi05M000909	CDS
cds.Bhi05M000909	cds.Bhi05M000909_2	CDS
cds.Bhi05M000909	cds.Bhi05M000909_3	CDS
cds.Bhi05M000909	cds.Bhi05M000909_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi05M000909	Bhi05M000909-protein	polypeptide