Bhi04M000535 (mRNA) Wax gourd (B227) v1

Overview
NameBhi04M000535
TypemRNA
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionDUF4283 domain-containing protein
Locationchr4: 15105420 .. 15105833 (+)
Sequence length414
RNA-Seq ExpressionBhi04M000535
SyntenyBhi04M000535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTCAGATGCAGACACAATGCTCCTTTATCTTTAATCCTTTTTCATCCCGATAAAGTCCTTCTCAAATGCCCTACCCCATATATGGCGAAGCTCTTCACAATGAACAAAGGATGGGCTACTTATGGGCCACTGACGCTAAAAATGGAGAGGTGGGATGTGGAAAAACTCGGAAGAATGCGAGTAATATCTTCTTATGGAGGATGGATCAAGCTTATCCCCCAGCATTTATGGAACAAAAGGGTGTTTAAAGCGGTTGATGACATGTTTTATGGTTTTATTGACTTGGCTGATGAGAACTCAAGTCTCAATGATTGCTTGGAAGTTGCCATTAAAGCCAAAGGAAATTATTGTGGTTTCATTCTTGTCGAGCTCATAAATGGATATGAAACTTTCTTGTGCAGGTGGTAA

mRNA sequence

ATGTCCTTCAGATGCAGACACAATGCTCCTTTATCTTTAATCCTTTTTCATCCCGATAAAGTCCTTCTCAAATGCCCTACCCCATATATGGCGAAGCTCTTCACAATGAACAAAGGATGGGCTACTTATGGGCCACTGACGCTAAAAATGGAGAGGTGGGATGTGGAAAAACTCGGAAGAATGCGAGTAATATCTTCTTATGGAGGATGGATCAAGCTTATCCCCCAGCATTTATGGAACAAAAGGGTGTTTAAAGCGGTTGATGACATGTTTTATGGTTTTATTGACTTGGCTGATGAGAACTCAAGTCTCAATGATTGCTTGGAAGTTGCCATTAAAGCCAAAGGAAATTATTGTGGTTTCATTCTTGTCGAGCTCATAAATGGATATGAAACTTTCTTGTGCAGGTGGTAA

Coding sequence (CDS)

ATGTCCTTCAGATGCAGACACAATGCTCCTTTATCTTTAATCCTTTTTCATCCCGATAAAGTCCTTCTCAAATGCCCTACCCCATATATGGCGAAGCTCTTCACAATGAACAAAGGATGGGCTACTTATGGGCCACTGACGCTAAAAATGGAGAGGTGGGATGTGGAAAAACTCGGAAGAATGCGAGTAATATCTTCTTATGGAGGATGGATCAAGCTTATCCCCCAGCATTTATGGAACAAAAGGGTGTTTAAAGCGGTTGATGACATGTTTTATGGTTTTATTGACTTGGCTGATGAGAACTCAAGTCTCAATGATTGCTTGGAAGTTGCCATTAAAGCCAAAGGAAATTATTGTGGTTTCATTCTTGTCGAGCTCATAAATGGATATGAAACTTTCTTGTGCAGGTGGTAA

Protein sequence

MSFRCRHNAPLSLILFHPDKVLLKCPTPYMAKLFTMNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKLIPQHLWNKRVFKAVDDMFYGFIDLADENSSLNDCLEVAIKAKGNYCGFILVELINGYETFLCRW
Homology
BLAST of Bhi04M000535 vs. ExPASy TrEMBL
Match: A0A5D3BR42 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001340 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 0

Query: 36  MNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKL--IPQHLWNKRVFKAVDDMFYG 95
           MNKGWATYGPLTLK+E W+ +  GRM  + SYGGWIKL   PQHLWN+ +FK V DM  G
Sbjct: 1   MNKGWATYGPLTLKLE-WNPKIHGRMLFVPSYGGWIKLRNFPQHLWNEEIFKKVGDMLRG 60

Query: 96  FIDLADENSSLNDCLEVAIKAKGNYCGFILVE--LINGYETFL 135
           FI+   ENSSL DC+EVAIK KGNYCGF+ +E  LI+  ++FL
Sbjct: 61  FINYTKENSSLIDCVEVAIKVKGNYCGFVPLEFDLIDDPDSFL 102

BLAST of Bhi04M000535 vs. ExPASy TrEMBL
Match: A0A6J1D6X4 (uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018186 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-25
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 0

Query: 16  FHPDKVLLKCPTPYMAKLFTMNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKL-- 75
           F  DK L+KCP+  +A L   NKGW T+GP+T+K+E W+    GR  +  SYG W+K+  
Sbjct: 81  FQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKLEAWNPLLHGRAFLFPSYGNWVKIRN 140

Query: 76  IPQHLWNKRVFKAVDDMFYGFIDLADENSSLNDCLEVAIKAKGNYCGFILVEL 127
           IP HLW+   FKA+ +   GFID  D NS   +C +VAIK K NYCGFI  E+
Sbjct: 141 IPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIKVKSNYCGFIPAEI 193

BLAST of Bhi04M000535 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 16  FHPDKVLLKCPTPYMAKLFTMNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKL-- 75
           FH DK L+       A L   NKGW T G   +K E W+ +     +VI SYGGWIK+  
Sbjct: 272 FHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRG 331

Query: 76  IPQHLWNKRVFKAVDDMFYGFIDLADENSSLNDCLEVAIKAKGNYCGFI 123
           +P H WN   F  + D   GFI++A E   L D +E +I+ K NY GFI
Sbjct: 332 VPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFI 380

BLAST of Bhi04M000535 vs. ExPASy TrEMBL
Match: A0A5A7VKI3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00160 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 0

Query: 16  FHPDKVLLKCPTPYMAKLFTMNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKL-- 75
           FH DK L+       A L   NKGW   G   +K E W+ +     +V+ SYGGWIK+  
Sbjct: 155 FHVDKALICFKDIEQANLICKNKGWTIVGRFYVKFEEWNQKDHASPKVVPSYGGWIKVRG 214

Query: 76  IPQHLWNKRVFKAVDDMFYGFIDLADENSSLNDCLEVAIKAKGNYCGFIL--VELINGYE 132
           +P H WN   F  + D++ GF+++A E   L D +E +I+ K NY GFIL  ++LI+  E
Sbjct: 215 VPLHAWNLESFVQIGDVYGGFMEVAKETRELTDLIEASIRVKDNYSGFILTFIKLIDKEE 274

BLAST of Bhi04M000535 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 16  FHPDKVLLKCPTPYMAKLFTMNKGWATYGPLTLKMERWDVEKLGRMRVISSYGGWIKL-- 75
           FH DK L+       A L   NKGW T G   +K E W+ +     +VI SYGGWIK+  
Sbjct: 324 FHADKALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRG 383

Query: 76  IPQHLWNKRVFKAVDDMFYGFIDLADENSSLNDCLEVAIKAKGNYCGFI 123
           +P H WN   F  + D   GFI++A E   L D +E +I+ K NY GFI
Sbjct: 384 VPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFI 432

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BR423.5e-2863.11LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1D6X48.2e-2548.67uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5A7U4956.3e-1742.20DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VKI36.3e-1739.17DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CFS86.3e-1742.20DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi04G000535Bhi04G000535gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi04M000535.exon1Bhi04M000535.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi04M000535cds.Bhi04M000535CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi04M000535Bhi04M000535-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process