Tan0022497 (gene) Snake gourd v1

Overview


Name	Tan0022497
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 22627186 .. 22628397 (-)
RNA-Seq Expression	Tan0022497
Synteny	Tan0022497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCAAATGATGAGGGCGGACCTGTAGAAATGAATGAAGCGGCATCCTCTAATAGTAGTCAGGTTCGAGGTGTTTCACGTGGGCTTGGTCTGGCTAGGATTATTGAGGCCATAGGGGATAGAATAAGTGTTTCATGGAGTCAAGAACAAGGTAAACCAGTTGGGAGTGTTGCTAGTCTGTTTAGCAGTGAAATTGGAATTCTCACGAGGGCGTTCGTCTCCTTAAAATATGCAACTAAATATGACATTCCAAACGATGTTTTTATGAACTACAATTAAATAATTTTCTTTAGCTTATTATTGAATTACAATTAAATACTAACGAGTGATATTTCTTTAATGGTTAGAATAAATTCGATGTAGGCATCTCGAAGGACTATATTCGGAAATATATTTGTTACGAGGTTGGAAATTGATATAAGGATTACAGATCGAGGTTGCATCAGTACTACAAAAAACGGAGGGACCCACAGGAAGCTCGTGAATACCCACACAAGGATGTTTCACCTGAAGATTGGAAAATATTATGTGATAGATGGGAGACAGAAGAATGGAAGGTAAATATTAGCTAAATTTTAAATAATACATGAGTCTCTTTTATTACCATACATTTTAATGCAGGACAAGTCAAAAAAGAACAAGGAGAGTAGAAGCAAACTCCCTTTCAACCATTGTGCTGGAACAAAATCATTTCTTACGCATAGAGAAGAAAAGGTATGTTATATATACTTTATATCTAGTTTTCAGTATTTTAGGGTTCAATAACGTAATAAGGTTTATTAATATATCTAATAGAAAAGAGAAGATGGTACATACTTGAGTCCCATTGAGATCTTCCATCAAACTCATTGGTCTGTTGCAAAGGGATGGACAGACATTGCAGCAAGTGAAGCACATGTAAGTATCTTTTAGATGTTTTAGAAGATAATTTTAAGTTTTTAAAGATCAATATCATTTATATATTGTTCTTAATGTATATAGGCAAAAATGGTGGCCCTAACAGAAGAGCAAGCCAATTCAAGTACACCGATGACTGACGAAGAAGTTGTGGCTACCGTTCTTGGAATACGACTGTCCTATGTTAAAGGAATGGGATATGGACCAAAACCACCACCATCTCATAAGAAATCATACTCAGAAGACTACGTTCAATCTCTAGAAGCTCACCTTGCACAGACTCAAGAACTATTGGAGAGTCAACGACAGTGA

mRNA sequence

ATGAGTTCAAATGATGAGGGCGGACCTGTAGAAATGAATGAAGCGGCATCCTCTAATAGTAGTCAGGTTCGAGGTGTTTCACGTGGGCTTGGTCTGGCTAGGATTATTGAGGCCATAGGGGATAGAATAAGTGTTTCATGGAGTCAAGAACAAGGTAAACCAGTTGGGAGTGTTGCTAGTCTGACAAGTCAAAAAAGAACAAGGAGAGTAGAAGCAAACTCCCTTTCAACCATTGTGCTGGAACAAAATCATTTCTTACGCATAGAGAAGAAAAGTACACCGATGACTGACGAAGAAGTTGTGGCTACCGTTCTTGGAATACGACTGTCCTATGTTAAAGGAATGGGATATGGACCAAAACCACCACCATCTCATAAGAAATCATACTCAGAAGACTACGTTCAATCTCTAGAAGCTCACCTTGCACAGACTCAAGAACTATTGGAGAGTCAACGACAGTGA

Coding sequence (CDS)

ATGAGTTCAAATGATGAGGGCGGACCTGTAGAAATGAATGAAGCGGCATCCTCTAATAGTAGTCAGGTTCGAGGTGTTTCACGTGGGCTTGGTCTGGCTAGGATTATTGAGGCCATAGGGGATAGAATAAGTGTTTCATGGAGTCAAGAACAAGGTAAACCAGTTGGGAGTGTTGCTAGTCTGACAAGTCAAAAAAGAACAAGGAGAGTAGAAGCAAACTCCCTTTCAACCATTGTGCTGGAACAAAATCATTTCTTACGCATAGAGAAGAAAAGTACACCGATGACTGACGAAGAAGTTGTGGCTACCGTTCTTGGAATACGACTGTCCTATGTTAAAGGAATGGGATATGGACCAAAACCACCACCATCTCATAAGAAATCATACTCAGAAGACTACGTTCAATCTCTAGAAGCTCACCTTGCACAGACTCAAGAACTATTGGAGAGTCAACGACAGTGA

Protein sequence

MSSNDEGGPVEMNEAASSNSSQVRGVSRGLGLARIIEAIGDRISVSWSQEQGKPVGSVASLTSQKRTRRVEANSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKSYSEDYVQSLEAHLAQTQELLESQRQ

Homology

[Close]

BLAST of Tan0022497 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-04
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 73  NSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKS--YS 132
           +S   I L+  H  + ++K    T+EE++ TVLG R +YV GMGYGPKP  +   S  YS
Sbjct: 108 DSEEMITLKAYHASQGDEK----TEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYS 167

Query: 133 EDYVQSLEAHLAQTQE 147
           ++YV+SLEA L + +E
Sbjct: 168 DEYVESLEARLQKHEE 179

[Close]

BLAST of Tan0022497 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-04
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 73  NSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKS--YS 132
           +S   I L+  H  + ++K    T+EE++ TVLG R +YV GMGYGPKP  +   S  YS
Sbjct: 103 DSEEMITLKAYHASQGDEK----TEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYS 162

Query: 133 EDYVQSLEAHLAQTQE 147
           ++YV+SLEA L + +E
Sbjct: 163 DEYVESLEARLQKHEE 174

[Close]

BLAST of Tan0022497 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 73  NSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKS--YS 132
           +S   I L+  H  + ++K    T+EE++ TVLG R +YV GMGYGPKP  +   S  YS
Sbjct: 103 DSEEMITLKAYHASQGDEK----TEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYS 162

Query: 133 EDYVQSLEAHLAQTQE 147
           ++YV+SLEA L + +E
Sbjct: 163 DEYVESLEARLQKHEE 174

[Close]

BLAST of Tan0022497 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 73  NSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKS--YS 132
           +S   I L+  H  + ++K    T+EE++ TVLG R +YV GMGYGPKP  +   S  YS
Sbjct: 108 DSEEMITLKAYHASQGDEK----TEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYS 167

Query: 133 EDYVQSLEAHLAQTQE 147
           ++YV+SLEA L + +E
Sbjct: 168 DEYVESLEARLQKHEE 179

[Close]

BLAST of Tan0022497 vs. ExPASy TrEMBL
Match: A0A6V7P2G1 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS8005 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 69  RVEANSLSTIVLEQNHFLRIEKKSTPMTDEEVVATVLGIRLSYVKGMGYGPKPPPSHKKS 128
           R+  + L T+V  Q+  L  ++   PMT++E+   VLG R  Y+ G GYGPK  P  ++ 
Sbjct: 80  RLRKDMLETMVNMQSQPLS-DENEVPMTEQEICTQVLGTRYGYIPGRGYGPK--PKSRRE 139

Query: 129 YSEDYVQSLEAHLAQTQELLESQR 153
            SE+    L+  L  T+ LLE+Q+
Sbjct: 140 VSENQSSQLQEELTNTKTLLETQQ 160

The following BLAST results are available for this feature:

BLAST of Tan0022497 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0022497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148911.1	3.7e-04	44.74	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022143616.1	3.7e-04	44.74	uncharacterized protein LOC111013476 [Momordica charantia]	[more]

BLAST of Tan0022497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQT5	1.8e-04	44.74	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	1.8e-04	44.74	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6V7P2G1	5.2e-04	36.90	Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS...	[more]

BLAST of Tan0022497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0022497.1	Tan0022497.1	mRNA