Tan0021937 (gene) Snake gourd v1

Overview


Name	Tan0021937
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	kinetochore protein SPC24 homolog
Location	LG03: 63583961 .. 63585278 (-)
RNA-Seq Expression	Tan0021937
Synteny	Tan0021937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCACCTGTTTTTCATCAACACGCTTGTTACCAATGAGATTAATGAACTAGACCAACATAGGATTTCTGTTCAAGAAAGGAAGCAGGCTTTGAAGAAACTTGAGCAACAAGAACTTAGGGCGCAGTGAGTATATTTTCTATAATGAAGATGCTTAGTCATCTGTAATTGTGACTGGTAATTTAGTAGCAATTAACTAATTTCTTTGAAATTTGAATCAATTTCATTAAGTGCAGTACCAAGTATTATTTGACAAGCATAATTTTTATGTATTTTTAGTTGGAAGTACAGGTTTATCTTTTATGTATATAAGTAAATTCGAATTTATAAGCACCTTTTTTGCTCCTATGGATTGCTAATGGTACTTAGCTTAACAAGTTAGACACTCCTATAAAGATGGATGCTCATCTTTTAGTGTAATGAACGTTTTATAGTCTAATTTTGATGCATGATAGAGATAATGGCAGCATATTTAATCTTGAGATCTCAAAGCCATGGAATCCACACCCCCCACCACCACCACCACAACAACAACAAAAAAAAAGAACAGTAATTTCCTTATGTTATAATCGTTATCCATTTCGTTTTTATTTGTTCTTCTGAAGTTATTTAGATCGCGTCATTTGAATTTCCGTCCTGTGTTGAAAACAAGAAATTTGTCTTCAAGGTATTCGGGATTTGCTAAAAGATTAGAGAGACTAGAAACAAAGTTATCAACGATTAGTAAACAACACTATCAAGTACCAAAAAGTGTCAAAGTCATTATTTATTTATAGTTTCTCTATAGCAGCTTGCAAATGCCTGCACACCAGTTACTTGTGTAGACGGAGGTGGATTAGACAGTAATTTCAGGAATAGTTCATTCCATAACTGAATTTACAATAGTTGCAATTACCATGTTCTTTTTAACTATGGACTTGTACAAACCCGACTTTCAAAGATCCCTGATAACTCAATTCTCGGTAATCTTTAGTTGACTAGTTGACATTAATCTGACAATTCTATATCATTCAAATTGATGCATATTTTCTTCTCTCTCTTGCAGGAGGAAGCTTTCGATGTATGCTTCGGTCACTGATATCATCCCAAACATGGACAATCAGTCTAAGATTTCTGGCCGTATCCTTCGTCTGAATTTACTCTTCTATTATATTTTATCTTTTCTTCCCATGGCTATTACTTTACCTTGACGTTAATCAACCATAGATATCGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTGCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCTCCATAG

mRNA sequence

ATGATGCACCTGTTTTTCATCAACACGCTTGTTACCAATGAGATTAATGAACTAGACCAACATAGGATTTCTGTTCAAGAAAGGAAGCAGGCTTTGAAGAAACTTGAGCAACAAGAACTTAGGGCGCAGAGGAAGCTTTCGATGTATGCTTCGGTCACTGATATCATCCCAAACATGGACAATCAGTCTAAGATTTCTGGCCATATCGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTGCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCTCCATAG

Coding sequence (CDS)

ATGATGCACCTGTTTTTCATCAACACGCTTGTTACCAATGAGATTAATGAACTAGACCAACATAGGATTTCTGTTCAAGAAAGGAAGCAGGCTTTGAAGAAACTTGAGCAACAAGAACTTAGGGCGCAGAGGAAGCTTTCGATGTATGCTTCGGTCACTGATATCATCCCAAACATGGACAATCAGTCTAAGATTTCTGGCCATATCGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTGCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCTCCATAG

Protein sequence

MMHLFFINTLVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHIVDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP

Homology

[Close]

BLAST of Tan0021937 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.8e-21
Identity = 45/92 (48.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LV +E+ +L+    S+ E KQ+ K+  + +LRA++KLSMYASVT++IP++D+ SKISG++
Sbjct: 108 LVADELKDLNAQLSSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYM 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMIN 102
           VDR KR+++KF+ +  KM+A++ CN IW++IN
Sbjct: 168 VDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of Tan0021937 vs. NCBI nr
Match: KAG6603567.1 (Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 9.7e-41
Identity = 86/103 (83.50%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MMHLFFINTLVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMD 60
           MMHL F+NT++T+EIN+LD+ RISVQERKQA+KKLEQQELR QRKLSMYASVTDIIPNMD
Sbjct: 1   MMHLLFVNTIITSEINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMD 60

Query: 61  NQSKISGHIVDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           +QSKISGHIVDRNKRVVQ+FE DPT +S+FDICN IWNMINSP
Sbjct: 61  DQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP 103

[Close]

BLAST of Tan0021937 vs. NCBI nr
Match: XP_023518318.1 (uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVTN+INELD+ RISVQERKQA KKLEQQELRAQRKLSMYASVTDIIPNMD+ SKISGHI
Sbjct: 108 LVTNQINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHI 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTKMS+FDICNDIWNMINSP
Sbjct: 168 VDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Tan0021937 vs. NCBI nr
Match: XP_022966574.1 (uncharacterized protein LOC111466216 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 9.0e-39
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVTN+INELD+ RISVQERKQA KKLEQQELRAQRKLSMYASVTDIIPNMD+ SKISGHI
Sbjct: 107 LVTNQINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHI 166

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTK S+FDICNDIWNMINSP
Sbjct: 167 VDRNKRVVQKFELDPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of Tan0021937 vs. NCBI nr
Match: XP_022931907.1 (uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 uncharacterized protein LOC111438184 [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LV+N+INELD+ RISVQE+KQA KKLEQQELRAQRKLSMYASVTDIIPNMD+ SKISGHI
Sbjct: 108 LVSNQINELDRQRISVQEKKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHI 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTKMS+FDICNDIWNMINSP
Sbjct: 168 VDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Tan0021937 vs. NCBI nr
Match: XP_022144075.1 (uncharacterized protein LOC111013852 isoform X2 [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 4.5e-38
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVT+EINELD  RISVQERKQA+KKLEQQELRAQRKLSMYASVTDIIPNMD+QSKISGHI
Sbjct: 104 LVTSEINELDCQRISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHI 163

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTK SAFDICN IW+MINSP
Sbjct: 164 VDRNKRVVQKFELDPTKTSAFDICNSIWDMINSP 197

[Close]

BLAST of Tan0021937 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.4e-39
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVTN+INELD+ RISVQERKQA KKLEQQELRAQRKLSMYASVTDIIPNMD+ SKISGHI
Sbjct: 107 LVTNQINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHI 166

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTK S+FDICNDIWNMINSP
Sbjct: 167 VDRNKRVVQKFELDPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of Tan0021937 vs. ExPASy TrEMBL
Match: A0A6J1F034 (uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC111438184 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.7e-39
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LV+N+INELD+ RISVQE+KQA KKLEQQELRAQRKLSMYASVTDIIPNMD+ SKISGHI
Sbjct: 108 LVSNQINELDRQRISVQEKKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHI 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTKMS+FDICNDIWNMINSP
Sbjct: 168 VDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Tan0021937 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVT+EINELD  RISVQERKQA+KKLEQQELRAQRKLSMYASVTDIIPNMD+QSKISGHI
Sbjct: 108 LVTSEINELDCQRISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHI 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTK SAFDICN IW+MINSP
Sbjct: 168 VDRNKRVVQKFELDPTKTSAFDICNSIWDMINSP 201

[Close]

BLAST of Tan0021937 vs. ExPASy TrEMBL
Match: A0A6J1CQL9 (uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LVT+EINELD  RISVQERKQA+KKLEQQELRAQRKLSMYASVTDIIPNMD+QSKISGHI
Sbjct: 104 LVTSEINELDCQRISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHI 163

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           VDRNKRVVQKFELDPTK SAFDICN IW+MINSP
Sbjct: 164 VDRNKRVVQKFELDPTKTSAFDICNSIWDMINSP 197

[Close]

BLAST of Tan0021937 vs. ExPASy TrEMBL
Match: A0A0A0KXM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312820 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.7e-38
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 2   MHLFFINTLVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDN 61
           M L F NTLVTNEINEL+  R+SVQERKQA+KKLEQQEL AQRKLSMYASVTDIIPNM++
Sbjct: 1   MRLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMED 60

Query: 62  QSKISGHIVDRNKRVVQKFELDPTKMSAFDICNDIWNMINSP 104
           QSKISGHIVDRNKRVVQKFE DP K+S+FD CN +WNMINSP
Sbjct: 61  QSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP 102

[Close]

BLAST of Tan0021937 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-22
Identity = 45/92 (48.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 10  LVTNEINELDQHRISVQERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHI 69
           LV +E+ +L+    S+ E KQ+ K+  + +LRA++KLSMYASVT++IP++D+ SKISG++
Sbjct: 108 LVADELKDLNAQLSSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYM 167

Query: 70  VDRNKRVVQKFELDPTKMSAFDICNDIWNMIN 102
           VDR KR+++KF+ +  KM+A++ CN IW++IN
Sbjct: 168 VDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of Tan0021937 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 26  QERKQALKKLEQQELRAQRKLSMYASVTDIIPNMDNQSKISGHIVDRNKRVVQKFELDPT 85
           +E + A+K+ ++ +LR + KL MYASVT +IPN+D+  K SG++V R+KR++ KFE D  
Sbjct: 111 EEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSN 170

Query: 86  K-MSAFDICND 96
           K  S ++ CN+
Sbjct: 171 KSTSVYETCNE 181

The following BLAST results are available for this feature:

BLAST of Tan0021937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	8.8e-21	48.91	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of Tan0021937 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603567.1	9.7e-41	83.50	Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023518318.1	1.8e-39	92.55	uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]	[more]
XP_022966574.1	9.0e-39	91.49	uncharacterized protein LOC111466216 [Cucurbita maxima]	[more]
XP_022931907.1	1.2e-38	90.43	uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 unchar...	[more]
XP_022144075.1	4.5e-38	91.49	uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]	[more]

BLAST of Tan0021937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HU69	4.4e-39	91.49	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]
A0A6J1F034	5.7e-39	90.43	uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC1114381...	[more]
A0A6J1CR83	2.2e-38	91.49	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQL9	2.2e-38	91.49	uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KXM7	3.7e-38	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G312820 PE=4 SV=1	[more]

BLAST of Tan0021937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	6.3e-22	48.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	1.7e-11	45.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..45
None	No IPR available	GENE3D	3.30.160.570	Ncd80 complex, Spc24 subunit	coord: 41..102 e-value: 1.0E-11 score: 46.4
IPR013252	Kinetochore-Ndc80 subunit Spc24	PFAM	PF08286	Spc24	coord: 12..98 e-value: 8.4E-6 score: 26.0
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 11..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021937.1	Tan0021937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation