Tan0020846 (gene) Snake gourd v1

Overview


Name	Tan0020846
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Histone H2B
Location	LG05: 2680022 .. 2681795 (+)
RNA-Seq Expression	Tan0020846
Synteny	Tan0020846

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACTTCAGCCACGGACGAATCAAAATTAATCGAGAGCAGATATAAATATATTAGCCCAACCTCGTTGTTCAGAGCAAACCACTTTCTGCTGTTATTCGAATCGAACTTGATCTTTTCCACCGCCTTCCGTTTATCTAACCAAATTCCGATGGCACCCAAGGCTGATAAGAAACCCGCCGAGAAGAAACCGGCGTCCGACAAGCCGGCCGAGGAAAAGAAATCCGTAGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCCGGGAAAAAGCTCCCGAAGGAAGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCGGACATCGGAATTTCCAGCAAAGCAATGGGTATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCTTCTAAGCTTGCTCGCTATAATAAGAAGCCCACCATCACTTCTCGGGAGATCCAGACCGCGGTCAGGCTTGTTCTTCCCGGTGAGTTAGCCAAGCACGCTGTTTCCGAGGGTACAAAGGCGGTGACCAAGTTTACAAGTTCTTAAGTCCCTAATTAGGCTAAGTGAGGGTTTCGAATAGTTGCTTTTAGGTGAATCAAATCGAAAAGAAATTAGGGTTAGAATTATGTTTAAATTATCACTGTGTGCTGGTGTATTTTTCATCCTTTGGATTTGTCATTTTCCTTTCACATATAGATGCTTAAGATTTGTAAATGCTTCTTTTATGTGCCAGTAATGAAAGTAATTTTGTTTCACCTACGTTGCAGTTTTTATTTCATCATTTGTTTTGGTATTCACAAATATTGGTTCTGGATGTCCTTCGATACAATATAGTTTACGCTGAATAAGGATTCGGAAAACTTTGTTTTCTTATGGGCTGTATTATCAATTCTTAACTTATATGGTTGATCTTTTACTTTTTGATCATATCTATTGAGTTATGAGGTTGGTGCATTGAAGTGTGG

mRNA sequence

GCGACTTCAGCCACGGACGAATCAAAATTAATCGAGAGCAGATATAAATATATTAGCCCAACCTCGTTGTTCAGAGCAAACCACTTTCTGCTGTTATTCGAATCGAACTTGATCTTTTCCACCGCCTTCCGTTTATCTAACCAAATTCCGATGGCACCCAAGGCTGATAAGAAACCCGCCGAGAAGAAACCGGCGTCCGACAAGCCGGCCGAGGAAAAGAAATCCGTAGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCCGGGAAAAAGCTCCCGAAGGAAGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCGGACATCGGAATTTCCAGCAAAGCAATGGGTATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCTTCTAAGCTTGCTCGCTATAATAAGAAGCCCACCATCACTTCTCGGGAGATCCAGACCGCGGTCAGGCTTGTTCTTCCCGGTGAGTTAGCCAAGCACGCTGTTTCCGAGGGTACAAAGGCGGTGACCAAGTTTACAAGTTCTTAAGTCCCTAATTAGGCTAAGTGAGGGTTTCGAATAGTTGCTTTTAGGTGAATCAAATCGAAAAGAAATTAGGGTTAGAATTATGTTTAAATTATCACTGTGTGCTGGTGTATTTTTCATCCTTTGGATTTGTCATTTTCCTTTCACATATAGATGCTTAAGATTTGTAAATGCTTCTTTTATGTGCCAGTAATGAAAGTAATTTTGTTTCACCTACGTTGCAGTTTTTATTTCATCATTTGTTTTGGTATTCACAAATATTGGTTCTGGATGTCCTTCGATACAATATAGTTTACGCTGAATAAGGATTCGGAAAACTTTGTTTTCTTATGGGCTGTATTATCAATTCTTAACTTATATGGTTGATCTTTTACTTTTTGATCATATCTATTGAGTTATGAGGTTGGTGCATTGAAGTGTGG

Coding sequence (CDS)

ATGGCACCCAAGGCTGATAAGAAACCCGCCGAGAAGAAACCGGCGTCCGACAAGCCGGCCGAGGAAAAGAAATCCGTAGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCCGGGAAAAAGCTCCCGAAGGAAGGCGGCGCCGCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCGGACATCGGAATTTCCAGCAAAGCAATGGGTATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCTTCTAAGCTTGCTCGCTATAATAAGAAGCCCACCATCACTTCTCGGGAGATCCAGACCGCGGTCAGGCTTGTTCTTCCCGGTGAGTTAGCCAAGCACGCTGTTTCCGAGGGTACAAAGGCGGTGACCAAGTTTACAAGTTCTTAA

Protein sequence

MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Tan0020846 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 142/152 (93.42%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKAEKKPAEK-----KPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Tan0020846 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-64
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK +KKPAEKKPA +K    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Tan0020846 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 245.4 bits (625), Expect = 4.3e-64
Identity = 141/152 (92.76%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Tan0020846 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-63
Identity = 136/152 (89.47%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK +KKPAEKKPA +K    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Tan0020846 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-63
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAP+A+KKPAEKKPA++KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Tan0020846 vs. NCBI nr
Match: XP_038900415.1 (histone H2B [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK+DKKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKSDKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. NCBI nr
Match: XP_004143093.1 (histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 5.5e-69
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKADKKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. NCBI nr
Match: XP_008448382.1 (PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo var. makuwa] >TYK23986.1 histone H2B [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 9.5e-69
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKADKKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. NCBI nr
Match: XP_028052986.1 (histone H2B-like [Camellia sinensis])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KPAEEKK+VAEK PAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKTPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. NCBI nr
Match: XP_015874056.1 (histone H2B-like [Ziziphus jujuba])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.7e-69
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKADKKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. ExPASy TrEMBL
Match: A0A5D3DK48 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.6e-69
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKADKKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. ExPASy TrEMBL
Match: A0A1S3BIZ0 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.6e-69
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKADKKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. ExPASy TrEMBL
Match: A0A6P3ZH56 (Histone H2B OS=Ziziphus jujuba OX=326968 GN=LOC107411057 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Tan0020846 vs. ExPASy TrEMBL
Match: A0A6J1D571 (Histone H2B OS=Momordica charantia OX=3673 GN=LOC111017046 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPASDK AEEKK+VAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 150

[Close]

BLAST of Tan0020846 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-65
Identity = 141/152 (92.76%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Tan0020846 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAP+A+KKPAEKKPA++KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Tan0020846 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-62
Identity = 136/152 (89.47%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA KKPAEKKPA   PAEE+K VAEKAPAEKKPKAGKKLPKE      +KKKKR KK
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEK-VAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Tan0020846 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-62
Identity = 136/152 (89.47%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKP       E+KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPV------EEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Tan0020846 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAP+A+KKPAEKK A+++P EE K+ AEKAPAEKKPKAGKKLP +    AGDKKKKR+KK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of Tan0020846 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	3.5e-66	93.42	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	1.5e-64	90.79	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	4.3e-64	92.76	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q1SWQ1	2.1e-63	89.47	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
O23629	3.6e-63	91.45	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

BLAST of Tan0020846 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900415.1	4.2e-69	98.68	histone H2B [Benincasa hispida]	[more]
XP_004143093.1	5.5e-69	98.68	histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucum...	[more]
XP_008448382.1	9.5e-69	98.68	PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo va...	[more]
XP_028052986.1	1.0e-67	96.71	histone H2B-like [Camellia sinensis]	[more]
XP_015874056.1	2.3e-67	96.05	histone H2B-like [Ziziphus jujuba]	[more]

BLAST of Tan0020846 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHC9	2.7e-69	98.68	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1	[more]
A0A5D3DK48	4.6e-69	98.68	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE...	[more]
A0A1S3BIZ0	4.6e-69	98.68	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1	[more]
A0A6P3ZH56	1.1e-67	96.05	Histone H2B OS=Ziziphus jujuba OX=326968 GN=LOC107411057 PE=3 SV=1	[more]
A0A6J1D571	3.3e-67	97.33	Histone H2B OS=Momordica charantia OX=3673 GN=LOC111017046 PE=3 SV=1	[more]

BLAST of Tan0020846 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	3.0e-65	92.76	Histone superfamily protein	[more]
AT3G45980.1	2.6e-64	91.45	Histone superfamily protein	[more]
AT2G28720.1	1.1e-62	89.47	Histone superfamily protein	[more]
AT3G46030.1	7.0e-62	89.47	Histone superfamily protein	[more]
AT1G07790.1	1.2e-61	88.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 106..123 score: 76.51 coord: 65..83 score: 80.55 coord: 84..104 score: 75.74 coord: 123..136 score: 64.22
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 55..140 e-value: 5.5E-48 score: 175.4
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 10..139
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 10..128 e-value: 2.5E-23 score: 82.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..144 e-value: 3.2E-48 score: 164.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 10..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020846.1	Tan0020846.1	mRNA
Tan0020846.2	Tan0020846.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity