Tan0018270 (gene) Snake gourd v1

Overview


Name	Tan0018270
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Elf4 domain-containing protein
Location	LG08: 448283 .. 450213 (+)
RNA-Seq Expression	Tan0018270
Synteny	Tan0018270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGCGTGACTGTCAAATCTATATATTCTATCTCTCCTTTTTAATTTTTAATTTTTTGTTCTCTCTCTTTATCTCTCTCTAGATTTCTCAGAAATTACAGAAGAGGTGTCTGTTCCGGAGATTCGATTCAATCGGCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTTCTTCCTCAATATAATGTTCCAGATTTTCAAGGTACTATCCATTTTCTTTCTATATATTCATTCATTTGTTCTTCAAATCTTTTTTTTTTCTTTTCCGACATAACTAACATGGTACTACAAAATTTATAATAATTACATAATTATCAAAGAAAAAAATAAAATAAGAGGAGACGACTTTTTTCTCTTTGTTTTTTCACTGGGAGCTTCTCTTTCTGTTGATGGTTTTTTCTTCTTTACGGAACATTGATTCTATCTGCGTTCTCAATGGTTGTTTCTGGACTTCTCCAGGGCTCTTTTTCCTTCCCTGTAATTATTTTTTTTAATTTAATTGTAATAAGATCTTCTCCTTAAAAGTTCTTGATGGGCTAGCTGACCCCAGGTAGCTGCAGTTATTAAATTTTCTTCCCCACTTAATCCTTAACACAGAATTTCAGATTGTTCTTTGATTAATTTCTTCTTATTTGTCTGACTTTGAATTAATATGCTTCTGCTTTTAAATAGGCTTGTTTATCTTTTACAAATTTGAAATTCCCCTTTGTTGGAAATATAGAATATAGATCAATAATGGTGTTTGTGGGCTTAGCTTCTGTGCATCATTGACTGGTTTTTGAGTGTTTGAAGAGATTCTTCCTTGGAACTCTGAGCTCTAGGTGGGTATTCTCTCAGTACATTAAAAAAGTTCCCTTTTATGGAAATGGGAATGGGATCTGCTTTTTCTTTCTACGTCTCATTATCAAATAATAATAAAAATAATAATTATTCTTCCTTTTTTTTTTTACATTAATAATTTCTCTTGTTTGTCCTCTCATAATCCATGGAGATGGAGGTGATGATTTCTGCTACAGTCCTTGTCTCATGTGCAGAACCGCCTTTTCTTTTAATTTTTTTTATTTTTTTTATAAAAAGTCCCTTTTTTCCATTTTCTATGTTTGGGGCTCATGTTAGTGAAAGCTTGTCCAGATAAGAAGATATGATTATGGTTTGTTCTTTAAAAACATATGTTAAATTAAATTATGCAAATTGTAACTAACACAACCCACCTTTTGTTCTGTTTTTTTTTTTTTTGGGAGGGCATAAATTAAAATGTATTTGATATGAAGCAGGATTGGGAGTGATTTTGAGAAGAAAATAGTGTTGGGTTAGAGAAAGAAAAAGAAGAGAGGAAAATGGAAGGGGAGACATTGTCATCAGGAGGAGTGGGAAATGGAAGCCAAATTGATGGTAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAGCATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCAGCAGAAATGTTGGTCTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGACTTGTACGCTGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCGTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAGCCATAATTTAATATCCCCCTTCTCTCCCTCTCTTCATTCTTTCCTTAGAACAATAATTTCCCAGATTCTCTGTTTCAGTGTAGCCTCCTTTTGGATCTAATTCATAAACCAAAATTAAGCATATATTTTAATTTCATATGGGTGCTTTAGATTTTCTTTTCTTTTTGGTTTCTGGTTCATGTCAGTAAGCTGATCTGTTTTCTTGTTTTTTTTTTCATTCCTCCCTTTTAAAATTAC

mRNA sequence

CCAAGCGTGACTGTCAAATCTATATATTCTATCTCTCCTTTTTAATTTTTAATTTTTTGTTCTCTCTCTTTATCTCTCTCTAGATTTCTCAGAAATTACAGAAGAGGTGTCTGTTCCGGAGATTCGATTCAATCGGCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTTCTTCCTCAATATAATGTTCCAGATTTTCAAGGGCATAAATTAAAATGTATTTGATATGAAGCAGGATTGGGAGTGATTTTGAGAAGAAAATAGTGTTGGGTTAGAGAAAGAAAAAGAAGAGAGGAAAATGGAAGGGGAGACATTGTCATCAGGAGGAGTGGGAAATGGAAGCCAAATTGATGGTAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAGCATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCAGCAGAAATGTTGGTCTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGACTTGTACGCTGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCGTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAGCCATAATTTAATATCCCCCTTCTCTCCCTCTCTTCATTCTTTCCTTAGAACAATAATTTCCCAGATTCTCTGTTTCAGTGTAGCCTCCTTTTGGATCTAATTCATAAACCAAAATTAAGCATATATTTTAATTTCATATGGGTGCTTTAGATTTTCTTTTCTTTTTGGTTTCTGGTTCATGTCAGTAAGCTGATCTGTTTTCTTGTTTTTTTTTTCATTCCTCCCTTTTAAAATTAC

Coding sequence (CDS)

ATGGAAGGGGAGACATTGTCATCAGGAGGAGTGGGAAATGGAAGCCAAATTGATGGTAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAGCATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCAGCAGAAATGTTGGTCTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGACTTGTACGCTGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCGTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAG

Protein sequence

MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRPPP

Homology

[Close]

BLAST of Tan0018270 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.9e-34
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T+S   +G+G Q+DGK+LQTF+K+FVQVQ+ILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNN+RRV  LY DLS +F+KSMEASSEGDS+         G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG------RGNRRIRP 108

[Close]

BLAST of Tan0018270 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+ LS  G G+   +DGK+LQ+FQK+FV VQ ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

[Close]

BLAST of Tan0018270 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-31
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+  S  G G   Q+DGK+LQ FQK+FVQVQ ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKR 113
           NVGLIRELNNNIR V  LY DLS SF +S++ASSEG+S   ++ D K  +++
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQK 114

[Close]

BLAST of Tan0018270 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-16
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQS+LD+NR LI ++N NH+S+M DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYADLSTSFTKSMEASSEG 97
           +Y+DL+TSF+        G
Sbjct: 82  MYSDLNTSFSSGFHGGKNG 100

[Close]

BLAST of Tan0018270 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-13
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D ++  T    F + Q  LDQNR LI  +N+NH S++PDN+SRNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 78  LYADLSTSFTKSME----ASSEGDS 99
           +Y+DLS +F K  +     + +GD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

[Close]

BLAST of Tan0018270 vs. NCBI nr
Match: XP_022946747.1 (protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022999232.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999233.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999234.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999235.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >KAG7030507.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45
Identity = 102/117 (87.18%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEGETLSSGG+GNG Q+DGKM QTFQKNFVQVQ+ILDQNRLLINEINQNHESKMPDNL+R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRPPP 118
           NVGLIRELNNNIRRVVDLYA LS SFTKSMEASSEG+SA      AKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA------AKPGHKRNRPPP 111

[Close]

BLAST of Tan0018270 vs. NCBI nr
Match: XP_021606568.1 (protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021606569.1 protein ELF4-LIKE 3-like [Manihot esculenta] >KAG8657102.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta] >KAG8657103.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta] >OAY53981.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SFTKSMEASSEGDS+ A++ DAK GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFTKSMEASSEGDSSGALKSDAKAGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. NCBI nr
Match: XP_023521403.1 (protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546933.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023546934.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEGETLSSGG+GNG Q+DGKM  TFQKNFVQVQ+ILDQNRLLINEINQNHESKMPDNL+R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAHTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRPPP 118
           NVGLIRELNNNIRRVVDLYA LS SFTKSMEASSEG+SA      AKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA------AKPGHKRNRPPP 111

[Close]

BLAST of Tan0018270 vs. NCBI nr
Match: XP_021596442.1 (protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596443.1 protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596444.1 protein ELF4-LIKE 3-like [Manihot esculenta] >KAG8636079.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta] >OAY27068.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta] >OAY27069.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GIGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SF+KSMEASSEGDS+ A+R D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFSKSMEASSEGDSSGALRSDGKAGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. NCBI nr
Match: XP_006381644.1 (protein ELF4-LIKE 3 [Populus trichocarpa] >XP_011045972.1 PREDICTED: protein ELF4-LIKE 3 [Populus euphratica] >XP_024458736.1 protein ELF4-LIKE 3 [Populus trichocarpa] >XP_034913477.1 protein ELF4-LIKE 3 [Populus alba] >XP_034913478.1 protein ELF4-LIKE 3 [Populus alba] >KAF9851294.1 hypothetical protein H0E87_015477 [Populus deltoides] >KAG6769926.1 hypothetical protein POTOM_025593 [Populus tomentosa] >KAG6772021.1 hypothetical protein POTOM_023417 [Populus tomentosa] >PNT31684.1 hypothetical protein POPTR_006G143800 [Populus trichocarpa] >PNT31685.1 hypothetical protein POPTR_006G143800 [Populus trichocarpa])

HSP 1 Score: 188.3 bits (477), Expect = 3.6e-44
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. ExPASy TrEMBL
Match: A0A6J1KJ14 (protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 102/117 (87.18%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEGETLSSGG+GNG Q+DGKM QTFQKNFVQVQ+ILDQNRLLINEINQNHESKMPDNL+R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRPPP 118
           NVGLIRELNNNIRRVVDLYA LS SFTKSMEASSEG+SA      AKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA------AKPGHKRNRPPP 111

[Close]

BLAST of Tan0018270 vs. ExPASy TrEMBL
Match: A0A6J1G4K6 (protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 102/117 (87.18%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEGETLSSGG+GNG Q+DGKM QTFQKNFVQVQ+ILDQNRLLINEINQNHESKMPDNL+R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRPPP 118
           NVGLIRELNNNIRRVVDLYA LS SFTKSMEASSEG+SA      AKPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA------AKPGHKRNRPPP 111

[Close]

BLAST of Tan0018270 vs. ExPASy TrEMBL
Match: A0A2C9W4E0 (Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G038900 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.1e-45
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SFTKSMEASSEGDS+ A++ DAK GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFTKSMEASSEGDSSGALKSDAKAGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. ExPASy TrEMBL
Match: A0A251JFU2 (Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G097100 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GIGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SF+KSMEASSEGDS+ A+R D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFSKSMEASSEGDSSGALRSDGKAGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. ExPASy TrEMBL
Match: B9MSX7 (Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G143800 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S  G+GNG+QIDGK+LQTFQKNFVQVQ+ILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of Tan0018270 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-35
Identity = 79/115 (68.70%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T+S   +G+G Q+DGK+LQTF+K+FVQVQ+ILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNRP 116
           NVGLIRELNNN+RRV  LY DLS +F+KSMEASSEGDS+         G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG------RGNRRIRP 108

[Close]

BLAST of Tan0018270 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 143.7 bits (361), Expect = 9.6e-35
Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+ LS  G G+   +DGK+LQ+FQK+FV VQ ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

[Close]

BLAST of Tan0018270 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 143.7 bits (361), Expect = 9.6e-35
Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+ LS  G G+   +DGK+LQ+FQK+FV VQ ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

[Close]

BLAST of Tan0018270 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-32
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MEGETLSSGGVGNGSQIDGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+  S  G G   Q+DGK+LQ FQK+FVQVQ ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDAKPGHKR 113
           NVGLIRELNNNIR V  LY DLS SF +S++ASSEG+S   ++ D K  +++
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQK 114

[Close]

BLAST of Tan0018270 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-17
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQSILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQS+LD+NR LI ++N NH+S+M DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYADLSTSFTKSMEASSEG 97
           +Y+DL+TSF+        G
Sbjct: 82  MYSDLNTSFSSGFHGGKNG 100

The following BLAST results are available for this feature:

BLAST of Tan0018270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8F5	7.9e-34	68.70	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	1.3e-33	66.67	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	6.3e-31	64.29	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
O04211	3.3e-16	50.63	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	4.5e-13	44.71	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]

BLAST of Tan0018270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946747.1	4.3e-45	87.18	protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE ...	[more]
XP_021606568.1	1.3e-44	86.09	protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021606569.1 protein ELF4-LIKE 3...	[more]
XP_023521403.1	1.6e-44	86.32	protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023521404.1...	[more]
XP_021596442.1	2.8e-44	85.22	protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596443.1 protein ELF4-LIKE 3...	[more]
XP_006381644.1	3.6e-44	85.22	protein ELF4-LIKE 3 [Populus trichocarpa] >XP_011045972.1 PREDICTED: protein ELF...	[more]

BLAST of Tan0018270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJ14	2.1e-45	87.18	protein ELF4-LIKE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111493668 PE=3 SV=1	[more]
A0A6J1G4K6	2.1e-45	87.18	protein ELF4-LIKE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450723 PE=3 SV=1	[more]
A0A2C9W4E0	6.1e-45	86.09	Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G038900 P...	[more]
A0A251JFU2	1.3e-44	85.22	Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G097100 P...	[more]
B9MSX7	1.8e-44	85.22	Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G14380...	[more]

BLAST of Tan0018270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06255.1	5.6e-35	68.70	ELF4-like 3	[more]
AT1G17455.1	9.6e-35	66.67	ELF4-like 4	[more]
AT1G17455.2	9.6e-35	66.67	ELF4-like 4	[more]
AT1G72630.1	4.5e-32	64.29	ELF4-like 2	[more]
AT2G40080.1	2.4e-17	50.63	Protein of unknown function (DUF1313)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 16..97 e-value: 1.3E-41 score: 140.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..117
None	No IPR available	PANTHER	PTHR33469:SF16	PROTEIN ELF4-LIKE 3	coord: 1..115
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018270.1	Tan0018270.1	mRNA
Tan0018270.2	Tan0018270.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005634	nucleus