Tan0018154 (gene) Snake gourd v1

Overview
NameTan0018154
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG02: 29731042 .. 29731611 (-)
RNA-Seq ExpressionTan0018154
SyntenyTan0018154
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA

mRNA sequence

ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA

Coding sequence (CDS)

ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA

Protein sequence

MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAENLVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASLKNQIESRDAAESRKTPIVRNKGKTSVQEDHTQHSTSIASLSSQQLKDMITNSIRAQYGWPTQNSLMYSK
Homology
BLAST of Tan0018154 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 96/192 (50.00%), Postives = 137/192 (71.35%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +SKS A++++Y GPITRS S+ +   + Q S IA  IL+++ +S +A + I EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D  + E  M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K Q+++R+ AES +TP+V+  +KGK  VQE+   Q STS+ASLS QQL+DMITNSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 96/192 (50.00%), Postives = 137/192 (71.35%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +SKS A++++Y GPITRS S+ +   + Q S IA  IL+++ +S +A + I EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D  + E  M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K Q+++R+ AES +TP+V+  +KGK  VQE+   Q STS+ASLS QQL+DMITNSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +SKS A++++Y GPITRS S+ +   + Q S IA  IL+++ +S +A + I EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D  + E  M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K Q+++R+ AES +TP+V+  +KGK  VQE+   Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +SKS A++++Y GPITRS S+ +   + Q S IA  IL+++ +S +A + I EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D  + E  M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K Q+++R+ AES +TP+V+  +KGK  VQE+   Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +SKS A++++Y GPITRS S+ +   + Q S IA  IL+++ +S +A + I EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D  + E  M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K Q+++R+ AES +TP+V+  +KGK  VQE+   Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 93/192 (48.44%), Postives = 131/192 (68.23%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +S S  ++N+Y GPITRS S+ +  E+ Q S +A  IL+++ +S++A + I EN
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSNVAQSILKQLMESLKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDVMS+MM D    E  M E ++KIN L+KAVEERD+EI +L
Sbjct: 61  PLYDNSDSSSSKSKKETHPDVMSVMMADI-TPEAAMAEMERKINFLMKAVEERDHEIIAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           + Q+ +R+ AES +TPIV+  +KGK  VQE+   Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPIVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P Q + MYSK
Sbjct: 181 GGPPQTTFMYSK 191

BLAST of Tan0018154 vs. ExPASy TrEMBL
Match: A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 88/192 (45.83%), Postives = 131/192 (68.23%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+ +S S  ++++Y GPITRS S+ +  E+ Q S +A +IL+++ +S +A + I EN
Sbjct: 1   MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQGSNVAQRILKQLIESPKAGIVIKEN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S +  + + PDV S+MM D  ++E  M E ++KIN L+KAVEERD+EI + 
Sbjct: 61  SLYDNSDSASNKSKKEAHPDVKSVMMADI-MTEAAMTEMERKINFLMKAVEERDHEITAF 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           + QI +R+ AES +TP+V+  +KGK  +QE+   Q S S+ASLS QQL+DMI NSI+AQY
Sbjct: 121 REQIRTRETAESSQTPVVKATDKGKNVLQENQPQQQSVSVASLSVQQLQDMIANSIKAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P Q + MYSK
Sbjct: 181 GGPPQTTFMYSK 191

BLAST of Tan0018154 vs. ExPASy TrEMBL
Match: A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 93/192 (48.44%), Postives = 133/192 (69.27%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+V+SKS A+++SY+G +T+SH ++   E+ Q  V+  K L ++ +S +  + I +N
Sbjct: 1   MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            +F   T  S    + S  +V+S+MM D   +E  MVE +KKIN L+K VEERD+EIA+L
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDV-TTEATMVEMEKKINFLMKVVEERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K+Q+++ + AES KTP+V+  +KGK  VQE+   Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 KDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. ExPASy TrEMBL
Match: A0A5A7TC87 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00670 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 93/192 (48.44%), Postives = 133/192 (69.27%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+V+SKS A+++SY+G +T+SH ++   E+ Q  V+  K L ++ +S +  + I +N
Sbjct: 1   MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            +F   T  S    + S  +V+S+MM D   +E  MVE +KKIN L+K VEERD+EIA+L
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDV-TTEATMVEMEKKINFLMKVVEERDHEIAAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           K+Q+++ + AES KTP+V+  +KGK  VQE+   Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 KDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191

BLAST of Tan0018154 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 89/192 (46.35%), Postives = 128/192 (66.67%), Query Frame = 0

Query: 1   MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
           M SK+V+S S  ++++Y GPITRS S+ +  E+ Q S +   IL+++ +S +A + I +N
Sbjct: 1   MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60

Query: 61  LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
            ++      S    + + PDVMS+MM D  + E  M E +KKIN L+KAVEERD+EI +L
Sbjct: 61  PLYDNSDLASSMSKKKAHPDVMSVMMADITV-EAAMAEMEKKINFLMKAVEERDHEITAL 120

Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
           + Q+ +R+ AES +TP+V+  +KGK  VQE+   Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPVVKATDKGKNVVQENQPQQQSISVASLSIQQLQDMIANSIRAQY 180

Query: 181 GWPTQNSLMYSK 190
           G   Q + MY K
Sbjct: 181 GGSPQTTFMYFK 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031742199.12.6e-3650.00uncharacterized protein LOC105435721 [Cucumis sativus][more]
XP_031735972.12.6e-3650.00uncharacterized protein LOC116401693 [Cucumis sativus][more]
XP_031739134.11.0e-3549.48uncharacterized protein LOC116402863 [Cucumis sativus][more]
XP_031742032.11.0e-3549.48uncharacterized protein LOC116404025 [Cucumis sativus][more]
XP_031737053.11.0e-3549.48uncharacterized protein LOC116402138 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3BY543.5e-3448.44Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TFN21.9e-3245.83Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DIN42.5e-3248.44Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TC872.5e-3248.44Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UF605.6e-3246.35Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018154.1Tan0018154.1mRNA