Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA
mRNA sequence
ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA
Coding sequence (CDS)
ATGACATCCAAAGAAGTTTCTTCAAAGTCTGTCGCTTCAAATAACTCCTACATGGGGCCAATCACGCGCAGTCACTCTAGAAAAGTCCAACCTGAAGAAAGTCAAACATCTGTCATCGCAAACAAAATACTTAGACGAATGACAAAATCTGTTCAAGCTGATGTCACCATCGCAGAAAACCTCGTGTTTGGAAAAATCACTTTTCCTTCTCTTCAACCGAGCGAAACATCAAGCCCTGATGTGATGTCCATTATGATGAATGATGCAGGCATTAGTGAGGAAAGAATGGTTGAATTTAAAAAGAAGATCAACATGTTATTGAAGGCAGTTGAAGAAAGAGATTATGAAATCGCTTCTCTTAAGAATCAGATTGAAAGTCGAGATGCTGCTGAATCAAGAAAAACCCCTATTGTCAGAAATAAGGGAAAGACCTCTGTACAAGAAGATCATACACAACATTCCACTTCAATTGCTTCATTATCTTCCCAACAACTCAAGGATATGATTACAAACTCCATCAGAGCACAATATGGTTGGCCTACTCAAAATTCTCTTATGTATTCCAAGTAA
Protein sequence
MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAENLVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASLKNQIESRDAAESRKTPIVRNKGKTSVQEDHTQHSTSIASLSSQQLKDMITNSIRAQYGWPTQNSLMYSK
Homology
BLAST of Tan0018154 vs. NCBI nr
Match:
XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])
HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 96/192 (50.00%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +SKS A++++Y GPITRS S+ + + Q S IA IL+++ +S +A + I EN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D + E M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K Q+++R+ AES +TP+V+ +KGK VQE+ Q STS+ASLS QQL+DMITNSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 96/192 (50.00%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +SKS A++++Y GPITRS S+ + + Q S IA IL+++ +S +A + I EN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D + E M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K Q+++R+ AES +TP+V+ +KGK VQE+ Q STS+ASLS QQL+DMITNSIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +SKS A++++Y GPITRS S+ + + Q S IA IL+++ +S +A + I EN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D + E M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K Q+++R+ AES +TP+V+ +KGK VQE+ Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. NCBI nr
Match:
XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])
HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +SKS A++++Y GPITRS S+ + + Q S IA IL+++ +S +A + I EN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D + E M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K Q+++R+ AES +TP+V+ +KGK VQE+ Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. NCBI nr
Match:
XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])
HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 95/192 (49.48%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +SKS A++++Y GPITRS S+ + + Q S IA IL+++ +S +A + I EN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D + E M E ++KIN+L+K V+ERD+EIA+L
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K Q+++R+ AES +TP+V+ +KGK VQE+ Q STS+ASLS QQL+DMIT+SIRAQY
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITSSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 93/192 (48.44%), Postives = 131/192 (68.23%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +S S ++N+Y GPITRS S+ + E+ Q S +A IL+++ +S++A + I EN
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSNVAQSILKQLMESLKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDVMS+MM D E M E ++KIN L+KAVEERD+EI +L
Sbjct: 61 PLYDNSDSSSSKSKKETHPDVMSVMMADI-TPEAAMAEMERKINFLMKAVEERDHEIIAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
+ Q+ +R+ AES +TPIV+ +KGK VQE+ Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPIVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P Q + MYSK
Sbjct: 181 GGPPQTTFMYSK 191
BLAST of Tan0018154 vs. ExPASy TrEMBL
Match:
A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 88/192 (45.83%), Postives = 131/192 (68.23%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+ +S S ++++Y GPITRS S+ + E+ Q S +A +IL+++ +S +A + I EN
Sbjct: 1 MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQGSNVAQRILKQLIESPKAGIVIKEN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + + PDV S+MM D ++E M E ++KIN L+KAVEERD+EI +
Sbjct: 61 SLYDNSDSASNKSKKEAHPDVKSVMMADI-MTEAAMTEMERKINFLMKAVEERDHEITAF 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
+ QI +R+ AES +TP+V+ +KGK +QE+ Q S S+ASLS QQL+DMI NSI+AQY
Sbjct: 121 REQIRTRETAESSQTPVVKATDKGKNVLQENQPQQQSVSVASLSVQQLQDMIANSIKAQY 180
Query: 181 GWPTQNSLMYSK 190
G P Q + MYSK
Sbjct: 181 GGPPQTTFMYSK 191
BLAST of Tan0018154 vs. ExPASy TrEMBL
Match:
A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 93/192 (48.44%), Postives = 133/192 (69.27%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+V+SKS A+++SY+G +T+SH ++ E+ Q V+ K L ++ +S + + I +N
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
+F T S + S +V+S+MM D +E MVE +KKIN L+K VEERD+EIA+L
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDV-TTEATMVEMEKKINFLMKVVEERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K+Q+++ + AES KTP+V+ +KGK VQE+ Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 KDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. ExPASy TrEMBL
Match:
A0A5A7TC87 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00670 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 93/192 (48.44%), Postives = 133/192 (69.27%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+V+SKS A+++SY+G +T+SH ++ E+ Q V+ K L ++ +S + + I +N
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
+F T S + S +V+S+MM D +E MVE +KKIN L+K VEERD+EIA+L
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDV-TTEATMVEMEKKINFLMKVVEERDHEIAAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
K+Q+++ + AES KTP+V+ +KGK VQE+ Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 KDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G P+Q S MYSK
Sbjct: 181 GGPSQTSFMYSK 191
BLAST of Tan0018154 vs. ExPASy TrEMBL
Match:
A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 89/192 (46.35%), Postives = 128/192 (66.67%), Query Frame = 0
Query: 1 MTSKEVSSKSVASNNSYMGPITRSHSRKVQPEESQTSVIANKILRRMTKSVQADVTIAEN 60
M SK+V+S S ++++Y GPITRS S+ + E+ Q S + IL+++ +S +A + I +N
Sbjct: 1 MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60
Query: 61 LVFGKITFPSLQPSETSSPDVMSIMMNDAGISEERMVEFKKKINMLLKAVEERDYEIASL 120
++ S + + PDVMS+MM D + E M E +KKIN L+KAVEERD+EI +L
Sbjct: 61 PLYDNSDLASSMSKKKAHPDVMSVMMADITV-EAAMAEMEKKINFLMKAVEERDHEITAL 120
Query: 121 KNQIESRDAAESRKTPIVR--NKGKTSVQEDH-TQHSTSIASLSSQQLKDMITNSIRAQY 180
+ Q+ +R+ AES +TP+V+ +KGK VQE+ Q S S+ASLS QQL+DMI NSIRAQY
Sbjct: 121 REQMRTRETAESSQTPVVKATDKGKNVVQENQPQQQSISVASLSIQQLQDMIANSIRAQY 180
Query: 181 GWPTQNSLMYSK 190
G Q + MY K
Sbjct: 181 GGSPQTTFMYFK 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BY54 | 3.5e-34 | 48.44 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TFN2 | 1.9e-32 | 45.83 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DIN4 | 2.5e-32 | 48.44 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TC87 | 2.5e-32 | 48.44 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7UF60 | 5.6e-32 | 46.35 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |