Tan0017842 (gene) Snake gourd v1

Overview


Name	Tan0017842
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 77830615 .. 77833244 (+)
RNA-Seq Expression	Tan0017842
Synteny	Tan0017842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATGCGGAACGACGGTTTCGCTACGACGATGCGGATCAGCCGACAGAGGCAGAAGGTGTGAATGTTTTGGAAGTAGGCGTCAATGTAGACACAATGACAGACATTCACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGACCCTATGGAGGTGTTGCTGATGACATCCCTCGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGGGTTCGATCCCGTGCGTCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGTGTCGTCTTGGTATGATTGAAGATAGTGTTCAAGAAGTGAAAGACGACGCTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACGACATCAGAATACTTATTTGTAGATTTGACCAACACATTCAAGTACGCAGCCGTAATTTCATGGTATAATCTACTGGCTAGTTGTACTTTTATCGCATTTTCATACGAAAATATTTGATATGTGTTTCAGGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACCGACGATCGATGAACCTCTTCCTCCAGATGTCGAAGATGTGGATGTGTTAGTGTGTGATCTTCCCACGTGCGATGCACCACGTGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAGAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAAACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATATGGTATCTACGTCGAGAGGTATGCAAGGCAGTCTGTCTGATGGGATGACACCTTCCAATGTACGCAGCACGTACGATCCATTGCATCCCATCCCGACAGATACGAAGGCCATGATGAACTCTTGGCTACGATTGAAAAACACGACCGGTACCCAAGATGAGTACAAGGTATGTGAATGGTCTACATGTGGACCCATAGACAGGACGTTCATACGTTCATTGTCCCGGAGGAACACATAGGTTACTTGTGATGTAAGTTAGTTATTTAGTTCATGCATTCATTGCCTGATATGTACAAAAGTCTTCTCGATTCCATTAGCTGACTCGTTTTCAATATTCCACTCTTTTACAGATGATTAATACGATTTTCATGTTGGTAAAGCAGAAACTCATTCATGGACATCGCAAATGTACACAAAAATTCACTGTCATCCATTCCAGTGCATTGGTATGTATACTCGTATGTGTATGTCAGTGGTTACATGCTATACACTCAACACATCTGATGCCTTGTGCAGGATCATCTAAGAAATCGGGACGGGATATATAAATAAATTGTCAAGAAAAACACCAAAGCTTCATGCGCTGTATGGTCGACTGATCCCACGTTCGTGGAATACGTTCTAAGTGTTTATCCAGACTACCGTCCAACATGGTATGCAGTCGACTACGTCTACGCTCCACTGAACATAAAGGAGCATTGGATGCTGCTTGGCTTGGATATGTCCAAAGGTATTATTATAGTACATGACTCCATGCCTTCGTTCATTAGTGAAGAGGAACTCGTGGATGAGCTACAACCATTGGCATACACTATACCATCACTGCTGGAGTATAGTAATTTACCAAATCGTAGTCCAGATACTATAAAGACACCGTGAGAGGTTACACGACCATATGATGTTGATCGTCAGTCCGCAGGGACGAAGGAGTGCGGGATTTTTTGTGCGAAATTCTTAGAGTACCTAGTCAGTGGGTTGGATTTGTCCACACTGAGCAACGATAATATGAAGGTATTTCGTACTCAGTATGCAGTTCAACTGTGGGCGAATACATTATATTTTTGACTTGTAATGTTATCGTACTCAGTTATTGTGATTGAATGTATACCATACTTCTAATTTTTGTGTTCGTGTATTGGATGTGTTGTGAAAGACGGTTTAAGTTCGGAGACATTTAAAAAAAACTTATGGAATTAAAAAGTCAGTAGGACTAGAGCGAGATTCACAAGTACCATAAAAAATTTCGCATTGCATATACGAGATCGAGAGTCTCGAAATTCCGTGGATTGACGTCCAGAACGACGCCCTTCGGAACCCCCCTTCGGGACAAGCTATACTAACCCAAGTGACGCGTAAGTTCGGAGACATTTTAAAAAAAAAACTTATGGAATTAAAAAATCAGTAGGAGTAGAGCGAGATTCACAAGTACCTTCAAAAATTTTGCATTGTATAGAGGAGATCGAGAGTCTCGAAATTCCGTGGATTGACGTCCGGAACGACGCCCTTCGGAACCCCCTTCGGGACAGGCGATACTAACCCACGTGACGCGTAAGTTCGGAGACATTTTAAAAAAAAACTTATGGAATTAAAAAGTCAGTAGGACTAGAGCGAGATTCACAAGTACCTTAAAAAATTTTGCATTCTATATACGAGATCGAGAGTCTCGAAATCCCGTGGATTGACGTCCGGAACGACGCCCTTCGGAAACCCCCTTCGGGACAGGCTATACTAACCCAAGTGACGCGTAA

mRNA sequence

ATGTTCGATGCGGAACGACGGTTTCGCTACGACGATGCGGATCAGCCGACAGAGGCAGAAGGTGTGAATGTTTTGGAAGTAGGCGTCAATGTAGACACAATGACAGACATTCACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGACCCTATGGAGGTGTTGCTGATGACATCCCTCGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGGGTTCGATCCCGTGCGTCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGTGTCGTCTTGGTATGATTGAAGATAGTGTTCAAGAAGTGAAAGACGACGCTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACGACATCAGAATACTTATTTGTAGATTTGACCAACACATTCAAGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACCGACGATCGATGAACCTCTTCCTCCAGATGTCGAAGATGTGGATGTGTTAGTGTGTGATCTTCCCACGTGCGATGCACCACGTGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAGAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAAACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATATGGTATCTACGTCGAGAGGCTATACTAACCCAAGTGACGCGTAA

Coding sequence (CDS)

ATGTTCGATGCGGAACGACGGTTTCGCTACGACGATGCGGATCAGCCGACAGAGGCAGAAGGTGTGAATGTTTTGGAAGTAGGCGTCAATGTAGACACAATGACAGACATTCACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGACCCTATGGAGGTGTTGCTGATGACATCCCTCGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGGGTTCGATCCCGTGCGTCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGTGTCGTCTTGGTATGATTGAAGATAGTGTTCAAGAAGTGAAAGACGACGCTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACGACATCAGAATACTTATTTGTAGATTTGACCAACACATTCAAGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACCGACGATCGATGAACCTCTTCCTCCAGATGTCGAAGATGTGGATGTGTTAGTGTGTGATCTTCCCACGTGCGATGCACCACGTGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAGAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAAACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATATGGTATCTACGTCGAGAGGCTATACTAACCCAAGTGACGCGTAA

Protein sequence

MFDAERRFRYDDADQPTEAEGVNVLEVGVNVDTMTDIHMTRSPAIQPLDGLNPESEGPYGGVADDIPRREDVPLHQQSSVPQCTETRVRSRASNRRIRTSTTRGTSQFMQRIECRLGMIEDSVQEVKDDAHVLRAEMQDMKDKLVDMHDDIRILICRFDQHIQVPTIVRTPENPAGHASVRPTIDEPLPPDVEDVDVLVCDLPTCDAPRDGVQSTEVECQTDDISAVDPVPFENVDQAETVLISHSSKRKSNELETPNLPSKKHMVSTSRGYTNPSDA

Homology

The following BLAST results are available for this feature:

BLAST of Tan0017842 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017842 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017842 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017842 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017842.1	Tan0017842.1	mRNA