Tan0017814 (gene) Snake gourd v1

Overview


Name	Tan0017814
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposon gag protein
Location	LG08: 27594859 .. 27601580 (-)
RNA-Seq Expression	Tan0017814
Synteny	Tan0017814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTATTACCCACAGCTGCTCCAATGAGCTGAGGTCGCAAGAAGATGAAGTAATGACACTGTCGGGGGCATCAACTAACAACAAGTTCTTGATCAAGTTTAACCCTTTGTTTGATTCTAATTCTGATGTAGTGTCCGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATAACGGGGATGGAAGAACAAATCAACGACTTAATGAAGGCGATTAAAGAAAAAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCCTGTTGTTAGAGATCAAAGCAAAGGAAAGAATGTTGTGCAAGAAGATCAACCACAACCTTCCAAGAATGTTGCGCAACAAGATCAACCACAACCATTCACTTCAATCGCTGAATTATCTGTCCAACAACTTCAGGACATGATAACGAACTCCATCAGAGCGCAATATGGTGGAGTTTCTCAAGATTCCCTCTTGTATTCCAAACCATATACTAAGAGGATCGACAATTTGAGAATGCCAACCGGATATCATCCACCAAAGTTTCAACAATTCGATGGAAAAGGCAACCCCAAGCAACATGTTGCGCATTTCATCGAGACATGTGAAAATGCCGGCACGCGAGGAGATCTACTAGTCAAGCAGTTCGTACGAACATTAAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAGTCCGAGTCAATAGACAGTTGGGAACAATTCGAAAAGGAGTTTCTAAATCGCTTCTACAGCACAAGACGAGTCGTCAGCATGTTTGAGCTCACCAACACCAGACAACGAAAAGGTGAACCCGTTGTCGACTACATAAATCGTTGGAGAGCCACAAGTCTCGATTGCAAAGATCGTCTCACTGAATTATCTGCTGTCGAAATGTGCATTCAAGGCATGCACTGGGGACTCCTTTACATCCTTCAGGGAATAAAGCCTCGCACTTTTGAAGAGGTAGCAACTCGCGCCCACGATATGGAGTTGAGTATTGCTAGCCAAAGAGATCAAGACATTCCAATCTCTAGCATGAAGAAGGAAGGAGAGTACATCGAGGAAACTTCAGAAGAGTCTATGGTTGTCAGTACAACTCCTCTCAAGATGTCTTCAAAACAAAAATACAAGAAATTTAAAAAGCAACAAGAAAATAGAAAGTGTCGCTTAAGTTTAAAGGAAAGACGAAACAAAGTCTATCCCTTTCCTGATTCTGACATGTCTGATATGTTGGAACAACTACTAGACGCACAACTAATTGAACTTCCAGAATGTAAGCGGCCGAAAGAGATGGAAAAGGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATCAGCCATCCAGTGGAAAAATATTTCGTCTTGAAAGAGCTAATTCTAAAATTAGCTAAAGAAGGCAAAATTGAGCTAGATCTCGATGAAATAGCTCAAACGAATCATACTGCAGTAACAGTAAATGCATGCAGTCAAATGTGCTCTAAACCGCTTCATGGCAAAGAAGTGAGCCTAGTCCAATTTGGAACCATGCAACCTGTAGCTGTTCAGCTTCAACATGAGATGTCAATAAACAAACTCCAAGGTACAATCAAACTTACTGATGATAAAGACAAAGGTCAGGTCCTTGTAACTCATTTGAAGAAACAAAGACAAAGTTTAGCTTCAGATGATTCTTGTCAATATAGAAGCCACAAATGCAAAGACAAACATCAAAAGAAGAATGATTCAAGGAAACTTAAGTTTGAAAGGAAGAGAAGCAAAGAATATTCTCAACTTGGAAAATCTATGACCTTAAAGGAATTCTTCTCTGGAAAATTCCTTCACATAAAAGAAAAGGAAGAAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGCTGATGACGTAAAAGAAGTCAAACAAAGGACTTCTGTCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGCCGCGACGGAAGAAGAAAACCTAGATCTAACTTCTAGCTCCATTCGAACTTCAGTCTTTCAAAGGCTAAATGTCTCTACTTCAAAGAAACGTCGACCTTCAACATCTGTTTTTTACCGCCTCAAAGTAACAAGTGGTCAAGATGAAAGCATGATGAACACCTCGAAAGCAGAACTGTTCGATGAGGTGAGCCATAACAAGGTCCAAAGTACCGTCCCTTCACGTATGAAAAGGAAGTTCTACGTTCTCATAAATACAGAGGGCTCCTTGAAGGTAAAGAAAAATCTTGTCATTGTAACAAATCCTACAAATGAAGGATTTAGTCAAGACCATGATGAGAACAAAATCATCTAAAATCTGAAGAGCTCCTTGTTGCAAGAGCCTAAACTGCATGATGCTCCTGGCCCGCACAAGCTTAAAAGGTGAATGGCTAAAAAAAAAATCCTTCTGAACTACGTTCTGACTTGATCCCTTTTCTTAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCACAAAAAAATTAAAAAAAAAGTGTGTTATAACTACTAAGATATGACATACTGGGGCTATACAAAAAGATTGAAGTTGTTGAATCCTATTGTCAATAGCGACGCTGCAAATTGAAGGTTTTGCATCATTATGAGGACGACATTGCAAGTTAAGTTCATACGAGGTCGCATCCTCTCCAATTCGAGGGGCTTCGCTGCTTCCTCTTAAAGTTCGAGGGCTTCGTCGTCGCTTCGTTTTAAAGTTCGAGGGTCTCGTCGTTGCTTCCTCTCAAAGTTCGAGGGTCTCGTCGTCGCTTCCTCTCAAAGTTCGAGGGCTTCGCCGTCAGTTCTTCTCAAAGTTGGAGGACTTCGTCGTCACTTCCTCTCAATGTTCGAGGGCTTCGTCGTCGCTTCCTCTGAAAGTGTGAGGGCTTCGTCGCCGCTTCTTCTCAAAGCTCAAGGGCTCCGTCGTCGCTTCCTCTCAAAGCTCAAGGGCTCCGTCGTCGCTTCCTCTCAAAACTCAAAGACTTCGTCGTCGTTTCTTCTCAAAGCTCGAAGACTCCGTCGTCGCTTCCTCTCAAAGCTCGAGGGCTCCGTCGTCGCTTCTTCTCAAAGCTTGAAGTCTCCGTTGTCGCTTCCTCTCAAAGCTTGAAGACTCCGTCGTCGCTTCTTCTCAAATCTCGAAGACTCCGTCGTCGCTTCTTCTCAAAGCTCTAAGACTTCGTCGTCGCTTCTTCTCAAAGTTCGAGGACTTCGTCGTCATTTCTTCTCAAAACTCGAAGACTTCGTCGTCGTTTCTTCTCAAAGCTCGAAGACTCTCGCCGCCGCTTCCTCTCAAAGCTCCGGGTTCCGCTGCCGCTTCTTCTCAAAGCTCAAGTCTCCGCTGCCGCCTCTCAAAGCTTGAAGACTCCGTCGTCGCTTCTTCTCAAAGCTCGAAGACTCCGTCGTCGCCTCTTCTCAAAGCTCGAAGACTTCGTCGTTGCTTCTTCTCAAAGCTCGAGGACTCCAACGTCTTCAAAGACTCTGGCGGTGCTTCCTCTTCAAAGACTCTAGCGGTGCTTCGTCTTCAAAGACTCTGGAAGTGCGGTCGCTTCGTCTTCAAAGACTCTGGCAGTGCGGTCGCTTCGTCTTCAAAGACTCTGACAGTGCAGTCGCTTTGTCTTCAAAGTCTCTGGCGATGCGGTCGTTTCGTCTTCAAAGTCTCCGGCGGTGCGGTCGCTTCGTCTTCAAAATCTCCGACGGTGCGGTCGCTTCGTCTTCAAAGTCTCCGCAGAAGACGGCGCCGTTTTCAAAGTCCGGTCTCCGGCGGCGGCTACATCTTTAAAGTCCGGTCTTCGGCGGCGGTTAAATCTTCAAAGTTTGGTCTCTAGCGGCGTCTTCACCTCCAAAGTCTGGTCTCCGGCGGCGACTACATCTTCAAAGTTCGGTCTCTAGCGGCGGCTTCACCTTCAAAGTCTGGTCTCCGGCGGCAGCTATATCTTCAAAGTTCGGCCTCCGACGGCGACTATATCTTCAAAGTCCGGTCTCCAGCGGCGGCTACATTTTCAAAGTCCGGTGTCTGGCGGAGGCTTCAGCTTTAAAGTCTTTTCTCGGGCGGCGGCTTCACCTTCAAAGTCTGGTCCCCGGTGGCGACTACATCTTCAAAGTTCGGTCTTTGGCGGCAGCTACATCTTCAAAGTCCGATCTCCAGCAGCGACTACATCTCCAAGGTCTGGTCTCCGGCGGCTACATCTCCAAGGTCCGGTATCTGGCGGCGGCTACATCTTCAAAGTTCGGTGTCTGGCGACAGCTATATCTTCAAAGTTCGATCTCCTGGCGGCGACCTCATCTTCAAAGTCCGGTCTCTGGCGGCGGCTTCATTTTCAAAGTCCGGTCTCTGGCGGCGTCTTCAGCTTCAAAGTCTGGTCTCTGGCGGCGACTTCACCTTCAAAGTCCGGTCTCTCGTGGCGGCTATATCTTCAAACCCGGTCTCAGTAGCGGCTACATCTTCAAAGTCGGTCTCTGCGCAGCAACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGGCTTCACCTTCAAAGTCTAGTCTTGGCGGCGGCTATATCTTCAAACTCCAGTCTCCAGTGGCGGCTACATCTTCAAAGTCTGGTCTCTGGCGGCGACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGACTTCACCTTCAAAGTCTGGTCTTCGGCGGCGGCTACATCTTCAAAGTCCGGTCCGGTCTCTGGCGGCGGCTAGTCTGATCTCCCGGCATCTCGACTTTCAAAAAAAAGAAAAAGAAAAAAAAAGTCAAGGTTTGGGACTCGCCTCACACCTTAGTAAGAAAGTCTTGTTCTCTGTTGGAGTGAATTGATAGAAGTCTCACTTCCTCTATTTATAGTTGAGGAAAAGATAAAAGTCAGATTCCAAAATGAAAGTTTGAATTCAAATAGGAGTTGGAATTGAGATTGGAATAAGATTTCATCTCAAATTGAAATCTGACTTATCTTATCTCCAATTGAAATCAGATTTTACACCAAATCAAAGTTGATGAAATTAATTTTATTCAAATCAAAATCATGATAGAATTTAAATTTTATCTCCAATCAAAATTTGAGCATAATCCAAATTTTATCCAAATCAAAGTTGATGAAACTAATTCTATTCAAATCAAAATCATGATAGAATTTCAATTTTATCTCAAATCAAAATTTGGACATACTCCAAATTTTATCCCAAATCAAAGTTGATGAAATTAATTCTATCCAAATCAAAATAATTTCAATTTTATCTCAAATCAAAATTTAGACATACTCCAGATTTTATCCCAAATCAAACTTGATAAAATTAGTTCTATCCAAATCAAAATCTTGATAGAATTTTAATTTTATCCTAAATCAAAATTTGGATATAATCCAAATTTATCCCAAATTTACATTAGATAAAGTTGATTCTATCAAGTTTACATCATTGTAGAATTGTAATTTTATCTTGCCAAACAAAATTTGGGCATAATCCAAATTTTATCCTAAGTCAAGGTTGAAATCTAAATTTTATCCTAGGACGAGGTTGGAGGAAAAATGTCAAATTTTATTACAAGTTTGCAAGTCCTAACCCAATTTCAAAAATTTTGGATAAAGTTTTTTTTAACCTTATCCCACATTTGTGTTGAATTAGAGTAGAGCATAAAAGTCTACTAAATTCAAATTAAATTTTATGCCAAATAAAAAAAATCAAAATATTGACTCAGATTCATATTTTGATATATTGGCATAAAGAGAAAAAAAAATGTGTCAAAGAAAAAAAAATCAATCCAGTTATGAACCAAATTTCATATTTGATTAAATTGACACATCAAGCGGAATTCAAATTATGAGCAAACCTCATCCAAATTAGAGCAAAATCTTATGTTTTGATTCTCAAATAACTTTTTCGAAATTCACACACACATAATTTGTGAATAAATTTCGAAAAGGGGACATTTGTTGGAATAGAAATTTCGACGAATCCAAAATTGCCACATCATCACCCGACATTGATGGCAAAATTATTTAATTAGGGACTAATTAAATCTGCAGTCATCCCTAAATTAAATTGGTGGATATACAATTGGGTTCCTTAAAATTTGATAGACAAAAGTCTAAATTAAAGACCCAGTTAGCAAAAGTCCAAGCCCGATCCAGAGACGTAGGCCCAAAATCAATAAGGCCCGGTCCAAGAAAGAAGACCCAAATCAGCCAAGCCCAAGAAGATTGACCCAACCCAAAATGGTTGGCCCAAAGCTAACCTGACCTAACCCAAAGGAGTTGGCCCAACAAAGAACAGGCCCAGTCCAACGAGCCCAAGCCCATCTGGAGGCCCAGAGAAACTCTATAAATAGAGACTTCCCTCATTCATTTTCAAGGTTCAGAAATTTGAGACTCCAGAGAGAATTCAGAAACAAAGCTGTGAAATCTCCAGAAGCTCTTGAAGATCAAACACCATCTGAACGAAGAACGCTTCAAGGGAATCGTCAAGAACACACCACGAATCCATTGAAGTTTTCAACATCGAGAACAAGCTGTATCAGCCCTCGAGAAAAGCTACAAGCCGAAGATCTTCAACAAGCTGCAAGCCGAAGACCTTCTACAAGCTGTAAGCCGAAGATCTTCAACAAGCTACAAGTCGGAGACCTTCAACACGCTACAAGCCGAAGATCTTCAACAAGCTACAAACTACAAGTCGAAGATCTTCAACTATATTATGTAA

mRNA sequence

ATGAGTTCTATTACCCACAGCTGCTCCAATGAGCTGAGGTCGCAAGAAGATGAAGTAATGACACTGTCGGGGGCATCAACTAACAACAAGTTCTTGATCAAGTTTAACCCTTTGTTTGATTCTAATTCTGATGTAGTGTCCGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATAACGGGGATGGAAGAACAAATCAACGACTTAATGAAGGCGATTAAAGAAAAAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCCTAGAAGCAAAGAATATTCTCAACTTGGAAAATCTATGACCTTAAAGGAATTCTTCTCTGGAAAATTCCTTCACATAAAAGAAAAGGAAGAAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGCTGATGACGTAAAAGAAGTCAAACAAAGGACTTCTGTCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGCCGCGACGGAAGAAGAAAACCTAGATCTAACTTCTAGCTCCATTCGAACTTCAGTCTTTCAAAGGCTAAATGTCTCTACTTCAAAGAAACGTCGACCTTCAACATCTGTTTTTTACCGCCTCAAAGTAACAAGTGGTCAAGATGAAAGCATGATGAACACCTCGAAAGCAGAACTGTTCGATGAGGTGAGCCATAACAAGGTCCAAAGTACCGTCCCTTCACGTATGAAAAGGAAGTTCTACGTTCTCATAAATACAGAGGGCTCCTTGAAGACTTCGTCGTCGCTTCTTCTCAAAGTTCGAGGACTTCGTCGTCATTTCTTCTCAAAACTCGAAGACTTCGTCGTCGTTTCTTCTCAAAGCTCGAAGACTCTCGCCGCCGCTTCCTCTCAAAGCTCCGGGTTCCGCTGCCGCTTCTTCTCAAAGCTCAACTCGAAGACTCCGTCGTCGCCTCTTCTCAAAGCTCGAAGACTTCGTCGTTGCTTCTTCTCAAAGCTCGAGGACTCCAACGTCTTCAAAGACTCTGGCGGTGCTTCCTCTTCAAAGACTCTAGCGGTGCTTCGTCTTCAAAGACTCTGGAAGTGCGGTCGCTTCGTCTTCAAAGACTCTGGCAGTGCGGTCGCTTCGTCTTCAAAGACTCTGACAGTGCAGTCGCTTTGTCTTCAAAGTCTCTGGCGATGCGGTCGTTTCGTCTTCAAAGTCTCCGGCGGTGCGGTCGCTTCGTCTTCAAAATCTCCGACGGTGCGGTCGCTTCGTCTTCAAAGTCTCCGCAGAAGACGGCGCCGTTTTCAAAGTCCGGTCTCCGGCGGCGGCTACATCTTTAAAGTCCGGTCTTCGGCGGCGGTTAAATCTTCAAATCTGGTCCCCGGTGGCGACTACATCTTCAAAGTTCGGTCTTTGGCGGCAGCTACATCTTCAAAGTCCGATCTCCAGCAGCGACTACATCTCCAAGGTCTGGTCTCCGGCGGCTACATCTCCAAGGTCCGGTATCTGGCGGCGGCTACATCTTCAAAGTTCGGTGTCTGGCGACAGCTATATCTTCAAAGTTCGATCTCCTGGCGGCGACCTCATCTTCAAAGTCCGGTCTCTGGCGGCGGCTTCATTTTCAAAGTCCGGTCTCTGGCGGCGTCTTCAGCTTCAAAGTCTGGTCTCTGGCGGCGACTTCACCTTCAAAGTCCGGTCTCTCGTGGCGGCTATATCTTCAAACCCGGTCTCAGTAGCGGCTACATCTTCAAAGTCGGTCTCTGCGCAGCAACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGGCTTCACCTTCAAACCCTCGAGAAAAGCTACAAGCCGAAGATCTTCAACAAGCTGCAAGCCGAAGACCTTCTACAAGCTGTAAGCCGAAGATCTTCAACAAGCTACAAGTCGGAGACCTTCAACACGCTACAAGCCGAAGATCTTCAACAAGCTACAAACTACAAGTCGAAGATCTTCAACTATATTATGTAA

Coding sequence (CDS)

ATGAGTTCTATTACCCACAGCTGCTCCAATGAGCTGAGGTCGCAAGAAGATGAAGTAATGACACTGTCGGGGGCATCAACTAACAACAAGTTCTTGATCAAGTTTAACCCTTTGTTTGATTCTAATTCTGATGTAGTGTCCGTCATGATGACTAAAACAAACACTATGGAAGAAAGAATAACGGGGATGGAAGAACAAATCAACGACTTAATGAAGGCGATTAAAGAAAAAGATTCTCAAATCGCATACTTAAAGAGTCAGATTGAGAATCAAGATGTCGTTGAATCAAGTCAAACTCCTAGAAGCAAAGAATATTCTCAACTTGGAAAATCTATGACCTTAAAGGAATTCTTCTCTGGAAAATTCCTTCACATAAAAGAAAAGGAAGAAAACTCTGTTGGTGTTTACTACATTGAAGCAGAAGAAGCTGATGACGTAAAAGAAGTCAAACAAAGGACTTCTGTCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTCTTCCAAAGGATGAGTATGGCCGCGACGGAAGAAGAAAACCTAGATCTAACTTCTAGCTCCATTCGAACTTCAGTCTTTCAAAGGCTAAATGTCTCTACTTCAAAGAAACGTCGACCTTCAACATCTGTTTTTTACCGCCTCAAAGTAACAAGTGGTCAAGATGAAAGCATGATGAACACCTCGAAAGCAGAACTGTTCGATGAGGTGAGCCATAACAAGGTCCAAAGTACCGTCCCTTCACGTATGAAAAGGAAGTTCTACGTTCTCATAAATACAGAGGGCTCCTTGAAGACTTCGTCGTCGCTTCTTCTCAAAGTTCGAGGACTTCGTCGTCATTTCTTCTCAAAACTCGAAGACTTCGTCGTCGTTTCTTCTCAAAGCTCGAAGACTCTCGCCGCCGCTTCCTCTCAAAGCTCCGGGTTCCGCTGCCGCTTCTTCTCAAAGCTCAACTCGAAGACTCCGTCGTCGCCTCTTCTCAAAGCTCGAAGACTTCGTCGTTGCTTCTTCTCAAAGCTCGAGGACTCCAACGTCTTCAAAGACTCTGGCGGTGCTTCCTCTTCAAAGACTCTAGCGGTGCTTCGTCTTCAAAGACTCTGGAAGTGCGGTCGCTTCGTCTTCAAAGACTCTGGCAGTGCGGTCGCTTCGTCTTCAAAGACTCTGACAGTGCAGTCGCTTTGTCTTCAAAGTCTCTGGCGATGCGGTCGTTTCGTCTTCAAAGTCTCCGGCGGTGCGGTCGCTTCGTCTTCAAAATCTCCGACGGTGCGGTCGCTTCGTCTTCAAAGTCTCCGCAGAAGACGGCGCCGTTTTCAAAGTCCGGTCTCCGGCGGCGGCTACATCTTTAAAGTCCGGTCTTCGGCGGCGGTTAAATCTTCAAATCTGGTCCCCGGTGGCGACTACATCTTCAAAGTTCGGTCTTTGGCGGCAGCTACATCTTCAAAGTCCGATCTCCAGCAGCGACTACATCTCCAAGGTCTGGTCTCCGGCGGCTACATCTCCAAGGTCCGGTATCTGGCGGCGGCTACATCTTCAAAGTTCGGTGTCTGGCGACAGCTATATCTTCAAAGTTCGATCTCCTGGCGGCGACCTCATCTTCAAAGTCCGGTCTCTGGCGGCGGCTTCATTTTCAAAGTCCGGTCTCTGGCGGCGTCTTCAGCTTCAAAGTCTGGTCTCTGGCGGCGACTTCACCTTCAAAGTCCGGTCTCTCGTGGCGGCTATATCTTCAAACCCGGTCTCAGTAGCGGCTACATCTTCAAAGTCGGTCTCTGCGCAGCAACTTCAGCTTTAAAGTCTTGTCTCTGGCGGCGGCTTCACCTTCAAACCCTCGAGAAAAGCTACAAGCCGAAGATCTTCAACAAGCTGCAAGCCGAAGACCTTCTACAAGCTGTAAGCCGAAGATCTTCAACAAGCTACAAGTCGGAGACCTTCAACACGCTACAAGCCGAAGATCTTCAACAAGCTACAAACTACAAGTCGAAGATCTTCAACTATATTATGTAA

Protein sequence

MSSITHSCSNELRSQEDEVMTLSGASTNNKFLIKFNPLFDSNSDVVSVMMTKTNTMEERITGMEEQINDLMKAIKEKDSQIAYLKSQIENQDVVESSQTPRSKEYSQLGKSMTLKEFFSGKFLHIKEKEENSVGVYYIEAEEADDVKEVKQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPSTSVFYRLKVTSGQDESMMNTSKAELFDEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSSSLLLKVRGLRRHFFSKLEDFVVVSSQSSKTLAAASSQSSGFRCRFFSKLNSKTPSSPLLKARRLRRCFFSKLEDSNVFKDSGGASSSKTLAVLRLQRLWKCGRFVFKDSGSAVASSSKTLTVQSLCLQSLWRCGRFVFKVSGGAVASSSKSPTVRSLRLQSLRRRRRRFQSPVSGGGYIFKVRSSAAVKSSNLVPGGDYIFKVRSLAAATSSKSDLQQRLHLQGLVSGGYISKVRYLAAATSSKFGVWRQLYLQSSISWRRPHLQSPVSGGGFIFKVRSLAASSASKSGLWRRLHLQSPVSRGGYIFKPGLSSGYIFKVGLCAATSALKSCLWRRLHLQTLEKSYKPKIFNKLQAEDLLQAVSRRSSTSYKSETFNTLQAEDLQQATNYKSKIFNYIM

Homology

[Close]

BLAST of Tan0017814 vs. NCBI nr
Match: KAA0042099.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18042.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 8.5e-29
Identity = 91/185 (49.19%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EFF   FL  H KE  E +         V   Y  +EE D+  E+
Sbjct: 10  KDEDFFQARRSITLTEFFPRSFLEDHPKEILEVTACHTISIVEVDNNYGSSEEVDNSNEI 69

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           K+RTSVFDRIKPSTTR SVFQR+SMA  EEEN   TS S +T  F+RL++STSKK RPST
Sbjct: 70  KERTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTSISTQTFAFKRLSISTSKKDRPST 129

Query: 221 SVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTS 273
           S F RLK+T+ + +  M T KA+LF E +++  K+ + VPSRMKRK +V I+T+GSL   
Sbjct: 130 SAFDRLKITNDRQQREMKTFKAKLFLEENNDDGKIHNRVPSRMKRKLFVDISTKGSLTVK 189

[Close]

BLAST of Tan0017814 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-27
Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  RTS F+RL++STSKK RPST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL    
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Tan0017814 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-27
Identity = 92/184 (50.00%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + ++  Q  +S+TL EFF   FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 69  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 128

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EEEN   TS+  RTS F+RL++STSKK RPST
Sbjct: 129 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ S VPSRMKRK  V INTEGSL    
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 248

[Close]

BLAST of Tan0017814 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-27
Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  RTS F+RL++STSKK RPST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL    
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Tan0017814 vs. NCBI nr
Match: KAA0062746.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-27
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 0


Query: 111 SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRI 170
           S+TL EF    FL  H+KE  E    ++V V      Y+ ++E D+  E+K+RTS+FDRI
Sbjct: 20  SITLAEFLPRNFLEDHLKEILEVTVCHAVSVVEVNNNYVSSKEVDNSNEIKKRTSIFDRI 79

Query: 171 KPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPSTSVFYRLKVTS 230
           KPSTTR SVF+R+SMA  EEEN  LTS+S +TS F+RL++STSKK RPS S F RLK+T+
Sbjct: 80  KPSTTRSSVFERLSMATKEEENQCLTSTSTQTSAFKRLSISTSKKDRPSISAFDRLKMTN 139

Query: 231 GQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL 273
            Q +  + T K + F E +++  K+ + VPSRMKRK  V I+TEGSL     L++
Sbjct: 140 NQQQREIKTLKTKPFLEENNDDGKIHNRVPSRMKRKLSVDISTEGSLTVKLRLII 194

[Close]

BLAST of Tan0017814 vs. ExPASy TrEMBL
Match: A0A5A7TL86 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003640 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-29
Identity = 91/185 (49.19%), Postives = 122/185 (65.95%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EFF   FL  H KE  E +         V   Y  +EE D+  E+
Sbjct: 10  KDEDFFQARRSITLTEFFPRSFLEDHPKEILEVTACHTISIVEVDNNYGSSEEVDNSNEI 69

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           K+RTSVFDRIKPSTTR SVFQR+SMA  EEEN   TS S +T  F+RL++STSKK RPST
Sbjct: 70  KERTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTSISTQTFAFKRLSISTSKKDRPST 129

Query: 221 SVFYRLKVTSGQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTS 273
           S F RLK+T+ + +  M T KA+LF E +++  K+ + VPSRMKRK +V I+T+GSL   
Sbjct: 130 SAFDRLKITNDRQQREMKTFKAKLFLEENNDDGKIHNRVPSRMKRKLFVDISTKGSLTVK 189

[Close]

BLAST of Tan0017814 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-28
Identity = 92/184 (50.00%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + ++  Q  +S+TL EFF   FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 69  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 128

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EEEN   TS+  RTS F+RL++STSKK RPST
Sbjct: 129 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ S VPSRMKRK  V INTEGSL    
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKP 248

[Close]

BLAST of Tan0017814 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-28
Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  RTS F+RL++STSKK RPST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL    
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Tan0017814 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-28
Identity = 90/184 (48.91%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 101 RSKEYSQLGKSMTLKEFFSGKFL--HIKEKEENS---------VGVYYIEAEEADDVKEV 160
           + +++ Q  +S+TL EF S  FL  H +E  E +         V   Y   EE D+  E+
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 161 KQRTSVFDRIKPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPST 220
           KQRTSVFDRIKP TTR SVFQR+SMA  EE+N   TS+  RTS F+RL++STSKK RPST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 221 SVFYRLKVTSGQDESMMNTSKAELF-DEVSHNKVQSTVPSRMKRKFYVLINTEGSLKTSS 273
           S F RLK+T+ Q +  M + KA+ F +E   +K+ + VPSRMKRK  V INTEGSL    
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKP 665

[Close]

BLAST of Tan0017814 vs. ExPASy TrEMBL
Match: A0A5A7V8H3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00270 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-27
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 0


Query: 111 SMTLKEFFSGKFL--HIKEKEE----NSVGVY-----YIEAEEADDVKEVKQRTSVFDRI 170
           S+TL EF    FL  H+KE  E    ++V V      Y+ ++E D+  E+K+RTS+FDRI
Sbjct: 20  SITLAEFLPRNFLEDHLKEILEVTVCHAVSVVEVNNNYVSSKEVDNSNEIKKRTSIFDRI 79

Query: 171 KPSTTRPSVFQRMSMAATEEENLDLTSSSIRTSVFQRLNVSTSKKRRPSTSVFYRLKVTS 230
           KPSTTR SVF+R+SMA  EEEN  LTS+S +TS F+RL++STSKK RPS S F RLK+T+
Sbjct: 80  KPSTTRSSVFERLSMATKEEENQCLTSTSTQTSAFKRLSISTSKKDRPSISAFDRLKMTN 139

Query: 231 GQDESMMNTSKAELFDEVSHN--KVQSTVPSRMKRKFYVLINTEGSLKTSSSLLL 273
            Q +  + T K + F E +++  K+ + VPSRMKRK  V I+TEGSL     L++
Sbjct: 140 NQQQREIKTLKTKPFLEENNDDGKIHNRVPSRMKRKLSVDISTEGSLTVKLRLII 194

The following BLAST results are available for this feature:

BLAST of Tan0017814 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017814 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042099.1	8.5e-29	49.19	Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18042.1 Retrotranspos...	[more]
TYK08944.1	1.2e-27	48.91	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	1.2e-27	50.00	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	1.2e-27	48.91	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0062746.1	2.1e-27	49.71	Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotranspos...	[more]

BLAST of Tan0017814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TL86	4.1e-29	49.19	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TQ06	5.9e-28	50.00	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7UI09	5.9e-28	48.91	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	5.9e-28	48.91	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V8H3	1.0e-27	49.71	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Tan0017814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017814.1	Tan0017814.1	mRNA