Tan0017527 (gene) Snake gourd v1

Overview


Name	Tan0017527
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 60040604 .. 60041011 (-)
RNA-Seq Expression	Tan0017527
Synteny	Tan0017527

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGGAAATTTCCCACACAGATCCGACATGAGACCCTCAAATACGTTTACAATGCACACATGAAAGAGGGATTGTCAGTGAGGGAACACGTTCTCGATGTGATGGTCCAATTCAAAATGGCAGAGATAAATGGGGCAGTCATTGACGAGCAAAGTCAGGTGTCATTCATTTTAGAATCTCTTCGGAAGAGTTTTTTACAATTCCGTAGTAATGCGGTAACGAATAGTATTCAGTACACCATGACTACCCTTCTTAATGAACTACAAACATACCAATCTCTAATGAAAAATAAGGGACCAGTTGAAAGAGAGGCGAATGTGTTTGCCCATTCAAAAAAGTTCCATAAGGGTTCATCCTCTGGAACTAAGTGTGTAGCTTCCTCTTCTTGTCTTAAGAAGATATAG

mRNA sequence

ATGTTTGGGAAATTTCCCACACAGATCCGACATGAGACCCTCAAATACGTTTACAATGCACACATGAAAGAGGGATTGTCAGTGAGGGAACACGTTCTCGATGTGATGGTCCAATTCAAAATGGCAGAGATAAATGGGGCAGTCATTGACGAGCAAAGTCAGGTGTCATTCATTTTAGAATCTCTTCGGAAGAGTTTTTTACAATTCCGTAGTAATGCGGTAACGAATAGTATTCAGTACACCATGACTACCCTTCTTAATGAACTACAAACATACCAATCTCTAATGAAAAATAAGGGACCAGTTGAAAGAGAGGCGAATGTGTTTGCCCATTCAAAAAAGTTCCATAAGGGTTCATCCTCTGGAACTAAGTGTGTAGCTTCCTCTTCTTGTCTTAAGAAGATATAG

Coding sequence (CDS)

ATGTTTGGGAAATTTCCCACACAGATCCGACATGAGACCCTCAAATACGTTTACAATGCACACATGAAAGAGGGATTGTCAGTGAGGGAACACGTTCTCGATGTGATGGTCCAATTCAAAATGGCAGAGATAAATGGGGCAGTCATTGACGAGCAAAGTCAGGTGTCATTCATTTTAGAATCTCTTCGGAAGAGTTTTTTACAATTCCGTAGTAATGCGGTAACGAATAGTATTCAGTACACCATGACTACCCTTCTTAATGAACTACAAACATACCAATCTCTAATGAAAAATAAGGGACCAGTTGAAAGAGAGGCGAATGTGTTTGCCCATTCAAAAAAGTTCCATAAGGGTTCATCCTCTGGAACTAAGTGTGTAGCTTCCTCTTCTTGTCTTAAGAAGATATAG

Protein sequence

MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILESLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSSSGTKCVASSSCLKKI

Homology

[Close]

BLAST of Tan0017527 vs. NCBI nr
Match: KAA0066490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.5e-38
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F MAE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFHMAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-38
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. NCBI nr
Match: KAA0045330.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.7e-38
Identity = 90/134 (67.16%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNAHM EG SV+EHVL++MV F MAE+NGAVIDE S+VSFIL+
Sbjct: 14  MFGQASYQIKHDALKYIYNAHMNEGASVQEHVLNMMVHFNMAEMNGAVIDEASKVSFILK 73

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 74  SLPESFLQFRSNAVMNKISYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 133

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 134 SGTKSMPSSSGNKK 146

[Close]

BLAST of Tan0017527 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 100 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 159

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 160 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 219

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 220 SGTKSMPSSSGNKK 232

[Close]

BLAST of Tan0017527 vs. ExPASy TrEMBL
Match: A0A5A7VH46 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F MAE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFHMAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-38
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. ExPASy TrEMBL
Match: A0A5A7TQ86 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001030 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 90/134 (67.16%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNAHM EG SV+EHVL++MV F MAE+NGAVIDE S+VSFIL+
Sbjct: 14  MFGQASYQIKHDALKYIYNAHMNEGASVQEHVLNMMVHFNMAEMNGAVIDEASKVSFILK 73

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 74  SLPESFLQFRSNAVMNKISYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 133

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 134 SGTKSMPSSSGNKK 146

[Close]

BLAST of Tan0017527 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0017527 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MFGKFPTQIRHETLKYVYNAHMKEGLSVREHVLDVMVQFKMAEINGAVIDEQSQVSFILE 60
           MFG+   QI+H+ LKY+YNA M EG SVREHVL++MV F +AE+NGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLRKSFLQFRSNAVTNSIQYTMTTLLNELQTYQSLMKNKGPVEREANVFAHSKKFHKGSS 120
           SL +SFLQFRSNAV N I YT+TTLLNELQT++SLMK KG  + EANV   ++KFH+GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKCVASSSCLKK 135
           SGTK + SSS  KK
Sbjct: 221 SGTKSMPSSSGNKK 233

The following BLAST results are available for this feature:

BLAST of Tan0017527 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017527 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066490.1	4.5e-38	68.66	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	5.9e-38	67.91	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045330.1	7.7e-38	67.16	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
KAA0044955.1	1.0e-37	67.91	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.0e-37	67.91	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0017527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VH46	2.2e-38	68.66	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280...	[more]
A0A5A7V6N0	2.8e-38	67.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7TQ86	3.7e-38	67.16	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7SMH8	4.9e-38	67.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	4.9e-38	67.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Tan0017527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 15..97 e-value: 1.4E-7 score: 31.3
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017527.1	Tan0017527.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding