Tan0014999 (gene) Snake gourd v1

Overview


Name	Tan0014999
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	mitochondrial zinc maintenance protein 1, mitochondrial
Location	LG04: 79733975 .. 79735942 (+)
RNA-Seq Expression	Tan0014999
Synteny	Tan0014999

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGGTTGACTTTTGAAATTAAAAAAAGAAAAAAAAAGTGACATTTAATCGAAACGACGCCGTCGCCTTTGGGCGCCTCTTTGTTACCGAGGAAGGACAGAAACTAATTTCAAGAGGGATGATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGGGACACCTTGATGCTGACGGAGTCCGCCGGCGAGGTCCGTCGGAATTTCGAAGAGAGCCGCCATGTGACTTCCGAGGCCGAGATTCGCAAATTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAAGCCAAGCTCACTTCTCGCGGCGGCTATGGTAATCTACCTCGTTCTTTTTCACTTTTGGATTAACTTACGGTGTTCCTTTTTGATTACTTTAACGGATAAAACCAACAACTAATCAAACACTTGGTTAGGGAATCGTGAATTTGAAATGAATGCATTGCAGCCCATGTGTTTGATAAAATGCTTAGGCCAATTTCTTTCCGCTTTTTATTTACTGAAAGCTAGTGGGTTAATGGAAAAAAAACATTAGAAACTACTATTGCCTCGTCTGGGGATGTTCAGTTCATAATTTTAATAGGCCGGGGTTTATGAAGCCTTGGGTTGGAAATTGAGAAGCATTGGGTTGGGAATTGAGAATGTGTAACCTGTGTTTGTATCATACGTACGAACAGGCTATAGAAACATAAGTTTGTGTAATCTGGATGTTTGTTGACATAACTTGGATAGTAGTGTTCTTTAGTTCAACAAAGAGTGGAAGGTTCACACTTCAGACCTTTAGAGGAGATTATCAATGACTTAAGCAATGGAGGCATACTCAAGTTAACAACTTGGATGACGTGTCATTAACAAATTCAGGTCCTTTGATTTTTGGAAATTGTGTTTGTTTTCTCATCATTTCTTTACCATCATTTTCATCTCTTAAGCAAACATTTGAATTCTTAGCCAAATTCCAAAAATAAATCAAGTTTTCAAAAACTATTTTTTTAGTTTTTAAAACTTCGCTTAGATTTTGAAAACATATGTAGGTAGAGAACAAAACAAAGAACCCTTTAGGTGGTAGTAGTGTTTATAAGTCTAACTTTCAAAGGCCAAAAACAAAAACCAAAATGGTTGTTCAATGGGGCTTCATGAATTGGGATTACAAACTCTACATCAAATGTGGGTTAAATTATAGAGATCTAACCTATGAATCCTATACCTTATAAGGTGCTAAGTCTAACGAACATATCAAACTTCCTAAAAATGCATTGTTTTTCCTTATAAACCAAGTCTGTGAATTTGAAACCAAAAACTGACCAAATAAATAAATAGGCCAGTGTTTATGAAGCCTTGGGATGGAATTGAAGTTGTGTAATTTGTGTTTGTATGAAATGAATGAATAGATTATAGAAACTTAAATTTGTGTAATCTGGATATTTGTTTACATAATATGGATAGCATATTATCAACAAACTCATATATCAAATTAGGAATAGTTTCTAAACCTTGAATTCTAAACCTTGAATTATACTAACCAAACCCATGAATCAAATACCCTTCAAGTCTGAGAGCCAAATTTATGTGTGTTGCTGCAGAAATGAAGCCGAGTAAAGAACATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTAAATGAGGAGATGAGTCGATGGATGCTGAATTTCTCTGCAATAATTGCTTTAAATTTCATCTAATGTGCTTCACTAATCAGCACTTTTTATCATGCTCTTTGAAGAATTTGAAACCTTTTTGTGTTCATTTTGTTGGTTCATTGCTGGTCTATATTTATTCGTGCCTGCATGAATGGAGGAAGTTGGACTCAAGATTCAAAATCTGGCTTAAAACTCTCGAGTGAATGAAAATTTTCCAGGAATACTCTTAGATTTATGAATTTTATCAAGAA

mRNA sequence

GCAAGGTTGACTTTTGAAATTAAAAAAAGAAAAAAAAAGTGACATTTAATCGAAACGACGCCGTCGCCTTTGGGCGCCTCTTTGTTACCGAGGAAGGACAGAAACTAATTTCAAGAGGGATGATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGGGACACCTTGATGCTGACGGAGTCCGCCGGCGAGGTCCGTCGGAATTTCGAAGAGAGCCGCCATGTGACTTCCGAGGCCGAGATTCGCAAATTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAAGCCAAGCTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGAACATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTAAATGAGGAGATGAGTCGATGGATGCTGAATTTCTCTGCAATAATTGCTTTAAATTTCATCTAATGTGCTTCACTAATCAGCACTTTTTATCATGCTCTTTGAAGAATTTGAAACCTTTTTGTGTTCATTTTGTTGGTTCATTGCTGGTCTATATTTATTCGTGCCTGCATGAATGGAGGAAGTTGGACTCAAGATTCAAAATCTGGCTTAAAACTCTCGAGTGAATGAAAATTTTCCAGGAATACTCTTAGATTTATGAATTTTATCAAGAA

Coding sequence (CDS)

ATGATGAAAGGGGAAGTTCTAAGCGCCTACAGAGCGTTGCTCAGGGCAACCAAGAAATCCTTCGCCGGGGACACCTTGATGCTGACGGAGTCCGCCGGCGAGGTCCGTCGGAATTTCGAAGAGAGCCGCCATGTGACTTCCGAGGCCGAGATTCGCAAATTGCTCGAAGAAGCTCGGGAGGCCTCCCATTTCATCTCCAATATGATCGTTCAAGCCAAGCTCACTTCTCGCGGCGGCTATGAAATGAAGCCGAGTAAAGAACATGCTGGTGCAACACTAGAAGTTCCTTCTGAAGAGCTTCTGCGCAAATCTAAATGA

Protein sequence

MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK

Homology

[Close]

BLAST of Tan0014999 vs. NCBI nr
Match: XP_038905396.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 5.6e-44
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           MKGEVLSAYRALLRATKKSFAGDTLMLTESA EVRR FEESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRALLRATKKSFAGDTLMLTESASEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKS 105
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Tan0014999 vs. NCBI nr
Match: XP_008454342.1 (PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 6.2e-43
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           MKGEVLSAYR+LLRATKKSFAGDTLMLTESA E+RR F+ESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           SHFISNMIVQAK TSRGGYEMKPSK+HAGATLEVPSEELLRKSK
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104

[Close]

BLAST of Tan0014999 vs. NCBI nr
Match: XP_022155304.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia])

HSP 1 Score: 184.1 bits (466), Expect = 6.2e-43
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           M+GEVLSAYRALLRAT KSFAGDTLMLTESA EVRR FEESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKS 105
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Tan0014999 vs. NCBI nr
Match: XP_022949021.1 (mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP_023524456.1 mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 8.0e-43
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEARE 60
           M+KGEVLSAYRALLRATKKSFAGDTLML ESA EVRR FEESRHVTS+ EIRKLLEEARE
Sbjct: 1   MVKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEARE 60

Query: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLR+SK
Sbjct: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRSK 105

[Close]

BLAST of Tan0014999 vs. NCBI nr
Match: KAG7036663.1 (MZM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEARE 60
           M++GEVLSAYRALLRATKKSFAGDTLML ESA EVRR FEESRHVTS+ EIRKLLEEARE
Sbjct: 1   MVRGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEARE 60

Query: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLR+SK
Sbjct: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRSK 105

[Close]

BLAST of Tan0014999 vs. ExPASy TrEMBL
Match: A0A6J1DPV6 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111022436 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           M+GEVLSAYRALLRAT KSFAGDTLMLTESA EVRR FEESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MRGEVLSAYRALLRATHKSFAGDTLMLTESAAEVRRKFEESRHVTSEAEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKS 105
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVPSEELLRKS
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPSEELLRKS 103

[Close]

BLAST of Tan0014999 vs. ExPASy TrEMBL
Match: A0A1S3BYH1 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494771 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           MKGEVLSAYR+LLRATKKSFAGDTLMLTESA E+RR F+ESRHVTSEAEIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKKSFAGDTLMLTESASEIRRKFQESRHVTSEAEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           SHFISNMIVQAK TSRGGYEMKPSK+HAGATLEVPSEELLRKSK
Sbjct: 61  SHFISNMIVQAKRTSRGGYEMKPSKDHAGATLEVPSEELLRKSK 104

[Close]

BLAST of Tan0014999 vs. ExPASy TrEMBL
Match: A0A6J1GAU2 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452487 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.9e-43
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEARE 60
           M+KGEVLSAYRALLRATKKSFAGDTLML ESA EVRR FEESRHVTS+ EIRKLLEEARE
Sbjct: 1   MVKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEARE 60

Query: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLR+SK
Sbjct: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRRSK 105

[Close]

BLAST of Tan0014999 vs. ExPASy TrEMBL
Match: A0A0A0KY80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 2   MKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEAREA 61
           MKGEVLSAYR+LLRATK+SFAGDTLMLTESA E+RR F+ESRHVTSE EIRKLLEEAREA
Sbjct: 1   MKGEVLSAYRSLLRATKRSFAGDTLMLTESASEIRRKFQESRHVTSEPEIRKLLEEAREA 60

Query: 62  SHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           SHFISNMIVQAKLTSRGGYEMKPSK+HAGATLEVP+EELLRKSK
Sbjct: 61  SHFISNMIVQAKLTSRGGYEMKPSKDHAGATLEVPTEELLRKSK 104

[Close]

BLAST of Tan0014999 vs. ExPASy TrEMBL
Match: A0A6J1KH11 (mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493140 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEARE 60
           M+KGEVLSAYRALLRATKKSFAGDTLML ESA EVRR FEESRHVTS+ EIRKLLEEARE
Sbjct: 1   MVKGEVLSAYRALLRATKKSFAGDTLMLKESAAEVRRKFEESRHVTSDPEIRKLLEEARE 60

Query: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRKSK 106
           ASHFISNMIVQAKLTSRGGYEMK SKEHAGATLEVPSEELLR+SK
Sbjct: 61  ASHFISNMIVQAKLTSRGGYEMKASKEHAGATLEVPSEELLRRSK 105

[Close]

BLAST of Tan0014999 vs. TAIR 10
Match: AT3G62810.1 (complex 1 family protein / LVR family protein )

HSP 1 Score: 140.6 bits (353), Expect = 7.3e-34
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MMKGEVLSAYRALLRATKKSFAGDTLMLTESAGEVRRNFEESRHVTSEAEIRKLLEEARE 60
           M+ GE L AYRALLRATKKSFAGDT ML  SA E+R+ FEE+R V S ++I +LLEEARE
Sbjct: 1   MVTGEALIAYRALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEARE 60

Query: 61  ASHFISNMIVQAKLTSRGGYEMKPSKEHAGATLEVPSEELLRK 104
           A+ FIS MIVQAKL  RGGYEMK S+EHAGATLE+PSEE+LRK
Sbjct: 61  ATQFISTMIVQAKLNERGGYEMKASQEHAGATLELPSEEMLRK 103

The following BLAST results are available for this feature:

BLAST of Tan0014999 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014999 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905396.1	5.6e-44	97.09	mitochondrial zinc maintenance protein 1, mitochondrial [Benincasa hispida]	[more]
XP_008454342.1	6.2e-43	93.27	PREDICTED: mitochondrial zinc maintenance protein 1, mitochondrial [Cucumis melo...	[more]
XP_022155304.1	6.2e-43	95.15	mitochondrial zinc maintenance protein 1, mitochondrial [Momordica charantia]	[more]
XP_022949021.1	8.0e-43	93.33	mitochondrial zinc maintenance protein 1, mitochondrial [Cucurbita moschata] >XP...	[more]
KAG7036663.1	1.8e-42	92.38	MZM1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0014999 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPV6	3.0e-43	95.15	mitochondrial zinc maintenance protein 1, mitochondrial OS=Momordica charantia O...	[more]
A0A1S3BYH1	3.0e-43	93.27	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucumis melo OX=3656 ...	[more]
A0A6J1GAU2	3.9e-43	93.33	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita moschata OX...	[more]
A0A0A0KY80	1.1e-42	91.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001780 PE=4 SV=1	[more]
A0A6J1KH11	3.3e-42	92.38	mitochondrial zinc maintenance protein 1, mitochondrial OS=Cucurbita maxima OX=3...	[more]

BLAST of Tan0014999 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62810.1	7.3e-34	72.82	complex 1 family protein / LVR family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 5..61 e-value: 4.2E-12 score: 45.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..105
None	No IPR available	PANTHER	PTHR46749	COMPLEX III ASSEMBLY FACTOR LYRM7	coord: 1..103
None	No IPR available	PANTHER	PTHR46749:SF2	BNAA09G40160D PROTEIN	coord: 1..103
None	No IPR available	CDD	cd20267	Complex1_LYR_LYRM7	coord: 6..77 e-value: 9.59285E-25 score: 86.8487

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014999.1	Tan0014999.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity