Tan0012678 (gene) Snake gourd v1

Overview


Name	Tan0012678
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA repair protein XRCC3 homolog
Location	LG08: 10270122 .. 10271003 (-)
RNA-Seq Expression	Tan0012678
Synteny	Tan0012678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGAAAATCTCCTCCATCTTCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCATCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTTCAACTCTGCCTCTGCGCTCAGCTCCCCCTCTCCAATGGCGGCCTCAACGCCTCCTCTCTCTACATCCACACAGAATTCCCTTTCCCCTTTCGTCGCCTTCAACAACTCTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCCAATCCCACCAATCACATCTTCGTCGAACCTGTCCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTTCTTGCAAATCGAAATTCCCAATTGCCCACCAGGCTTATTGTGATTGATTCGATTGCAGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCTAAGAGGTATTCCTTGGCTGTTGTGTTGACGAATCAGGTAGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCATTGAGAATTGGGAATTTGAAGTATCTGTGTTCGTCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTAGAGAAGGAGATGGGATAATGAATGGCAGTGAATTAGCACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCTCATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTATGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTTCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCATCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTTCAACTCTGCCTCTGCGCTCAGCTCCCCCTCTCCAATGGCGGCCTCAACGCCTCCTCTCTCTACATCCACACAGAATTCCCTTTCCCCTTTCGTCGCCTTCAACAACTCTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCCAATCCCACCAATCACATCTTCGTCGAACCTGTCCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTTCTTGCAAATCGAAATTCCCAATTGCCCACCAGGCTTATTGTGATTGATTCGATTGCAGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCTAAGAGGTATTCCTTGGCTGTTGTGTTGACGAATCAGGTAGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCATTGAGAATTGGGAATTTGAAGTATCTGTGTTCGTCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTAGAGAAGGAGATGGGATAATGAATGGCAGTGAATTAGCACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCTCATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTATGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTTCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCATCGCCTGCAACTCCCTCACCGAGATCGTCGCCGAGAGCGGCTGCGGCAAAACCCAACTCTGCCTTCAACTCTGCCTCTGCGCTCAGCTCCCCCTCTCCAATGGCGGCCTCAACGCCTCCTCTCTCTACATCCACACAGAATTCCCTTTCCCCTTTCGTCGCCTTCAACAACTCTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCCAATCCCACCAATCACATCTTCGTCGAACCTGTCCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTTTCTTGCAAATCGAAATTCCCAATTGCCCACCAGGCTTATTGTGATTGATTCGATTGCAGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGTTGCTGGCTAAGAGGTATTCCTTGGCTGTTGTGTTGACGAATCAGGTAGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCATTGAGAATTGGGAATTTGAAGTATCTGTGTTCGTCGGGACGACGAGTCTGCCCAGCGCTGGGGCTCGCGTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTAGAGAAGGAGATGGGATAATGAATGGCAGTGAATTAGCACAAAGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCTCATTTGCCTAAATCATCTTGTGAGTATGTAATCAATAGAGAAGGAGTTATGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ

Homology

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BLAST of Tan0012678 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.5e-100
Identity = 180/297 (60.61%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPL 62
           PENLL    T +K T GC I+D  + GGI+C+SLTEIVAESGCGKTQLCLQL LC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPTNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNE-EVIRE-GDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVES 293
           SR++  ++++  +   N S    R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Tan0012678 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-37
Identity = 106/301 (35.22%), Postives = 152/301 (50.50%), Query Frame = 0


Query: 7   LHLLQTT-------QKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQ 66
           LHL Q         Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQLCL  Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYPQ-------FSNPTNHIFVE 126
            P   GGL A ++YI TE  FP +RL QL    +   +  P+       FS   NHIF+E
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFS---NHIFIE 185

Query: 127 PVHSAHQLFDIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFK 186
                  L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   
Sbjct: 186 HAADVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLS 245

Query: 187 ISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWAN 246
           +   L+ L+  +   V+  NQV D++     ++       + L +S  R+ PALG+ WAN
Sbjct: 246 LGATLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWAN 305

Query: 247 CVNSRLFLSRNEEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMG 291
            +  RL + R  E     D +  G   +  RT   L V+FAPHLP SSC Y ++ EG+ G
Sbjct: 306 QLLMRLMVDRTHE-----DDVTTGLPRSPVRT---LRVLFAPHLPLSSCCYTVSGEGIRG 343

[Close]

BLAST of Tan0012678 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-33
Identity = 102/283 (36.04%), Postives = 138/283 (48.76%), Query Frame = 0


Query: 14  QKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSNGGLNASSLY 73
           Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLCL  Q P  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYP----QFSNPTNHIFVEPVHSAHQLFDIMPKIES 133
           I TE  FP +RLQQL        +  P    Q     + IF+E V     L + + K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVV 193
            L +R      RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVIRE 253
             NQV + M      +    G L +      RV PALG+ WAN +  RL   R  E    
Sbjct: 260 CINQVTEAMEEQGAAH----GPLGFW---DERVSPALGITWANQLLVRLLADRLRE---- 319

Query: 254 GDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMG 290
                   E A     R L V+ APHLP SSC Y I+ EGV G
Sbjct: 320 -------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Tan0012678 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-33
Identity = 102/302 (33.77%), Postives = 145/302 (48.01%), Query Frame = 0


Query: 7   LHLL-------QTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQ 66
           LHLL       +  Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLCL  Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYPQFSNPTNHIFVEPVHSAHQ 126
           LP  +GGL A ++Y+ TE  FP RRLQQL    Q   +  P       H+ +  +   HQ
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVP------GHV-ISKIRFGHQ 185

Query: 127 LF-DIMPKIESFLANRNSQLP-------TRLIVIDSIAALFRSDFDNTPSDLKRRSALFF 186
           +F +    +++ L     ++P        RL+VIDS+AA FR +FD   + L  R+    
Sbjct: 186 IFIEHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLL 245

Query: 187 KISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWA 246
            +  +L+ L+  +   V+  NQV + +   D            L +    + PALG+ WA
Sbjct: 246 ALGAELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWA 305

Query: 247 NCVNSRLFLSRNEEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVM 291
           N +  RL   R               E       R L VVFAPHLP SSC Y I  EGV 
Sbjct: 306 NQLLVRLLADRQRP-----------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVR 335

[Close]

BLAST of Tan0012678 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-26
Identity = 85/282 (30.14%), Postives = 139/282 (49.29%), Query Frame = 0


Query: 23  IDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSNGGLNASSLYIHTEFPFPF 82
           +D ++ GG+AC SLTEI    GCGKTQ C+ + + A LP + GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQFSNPTNHIFV--EPVHSAHQLF--DIMPKIESFLANRNSQLPTR 142
            RL ++++   S +P++ N    + +    VH   +L   +++ +IES L         +
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIES-LEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQV------ 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+ +S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -----VDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVIRE 262
                 DL+  +D L      +L    S    V  ALG  W++ VN+RL L   +     
Sbjct: 270 ALASQADLVSPADDL------SLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---- 329

Query: 263 GDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVM 289
                          RR + +  +P  P +S  Y I  EG++
Sbjct: 330 --------------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]

BLAST of Tan0012678 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 552.4 bits (1422), Expect = 2.4e-153
Identity = 274/294 (93.20%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGG+AC+SLTEIVAESGCGKTQLCLQL LCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNP++HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NRNSQLP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQ-RRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EG+G+MNGSEL Q RRTRRWLHVVFAPHLPKSSCEYVINREGV+GVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Tan0012678 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 550.4 bits (1417), Expect = 9.1e-153
Identity = 270/293 (92.15%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGG+ACNSLTEIV+ESGCGKTQLCLQLC CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNP++HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR+S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGRRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EGDG++N  ELAQRRTRRWLHVVFAPHLPKSSCEYVINR+GV+GVESQ
Sbjct: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 550.4 bits (1417), Expect = 9.1e-153
Identity = 270/293 (92.15%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGG+ACNSLTEIV+ESGCGKTQLCLQLC CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNP++HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR+S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGRRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EGDG++NG ELAQRRTRRWLHVVFAPHLPKSSCEYVINR+GV+GVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. NCBI nr
Match: XP_022969693.1 (DNA repair protein XRCC3 homolog [Cucurbita maxima])

HSP 1 Score: 549.3 bits (1414), Expect = 2.0e-152
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGG+ACNSLTEIVAESGCGKTQLCLQLC CAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLS GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF NP++HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR+S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDL+ SSDG++ALRIGNLK LCSSGRRVCPALG+ WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EGDG++NG ELAQRRTRRWLHVVFAPHLPKSSCEYVINR+GV+GVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. NCBI nr
Match: XP_038890688.1 (DNA repair protein XRCC3 homolog [Benincasa hispida])

HSP 1 Score: 548.1 bits (1411), Expect = 4.5e-152
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRS GGG+AC+SLTEIVAESGCGKTQLCLQL L AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSAGGGVACSSLTEIVAESGCGKTQLCLQLSLYAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNP++HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFL N NSQLP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLKNSNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSL VVLTNQVVDL+GSSDGLNALRIGNLK+L SSGR+VCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLGVVLTNQVVDLIGSSDGLNALRIGNLKFLSSSGRQVCPALGLAWANCVNTRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EE++ EG+G+MNGSEL QRRTRRWLHVVFAPHLPKSSCEYVINREGV+GVESQ
Sbjct: 241 EEIVGEGEGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153
Identity = 274/294 (93.20%), Postives = 286/294 (97.28%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGG+AC+SLTEIVAESGCGKTQLCLQL LCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNP++HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NRNSQLP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQ-RRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EG+G+MNGSEL Q RRTRRWLHVVFAPHLPKSSCEYVINREGV+GVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Tan0012678 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.4e-153
Identity = 270/293 (92.15%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGG+ACNSLTEIV+ESGCGKTQLCLQLC CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNP++HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR+S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGRRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EGDG++NG ELAQRRTRRWLHVVFAPHLPKSSCEYVINR+GV+GVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. ExPASy TrEMBL
Match: A0A6J1I1Q9 (DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 9.9e-153
Identity = 269/293 (91.81%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGG+ACNSLTEIVAESGCGKTQLCLQLC CAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLS GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF NP++HIFVEPVHSA QLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANR+S LPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDL+ SSDG++ALRIGNLK LCSSGRRVCPALG+ WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVESQ 294
           EEV+ EGDG++NG ELAQRRTRRWLHVVFAPHLPKSSCEYVINR+GV+GVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Tan0012678 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 3.7e-152
Identity = 272/293 (92.83%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGGIAC+SLTEIVAESGCGKTQLCLQL LCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNP++HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NRNS LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRR-TRRWLHVVFAPHLPKSSCEYVINREGVMGVES 293
           EEV+ EG+G++NGSEL QRR TRRWLHVVFAPHLPKSSCEYVINREGV+GVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Tan0012678 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 3.7e-152
Identity = 272/293 (92.83%), Postives = 283/293 (96.59%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGGIAC+SLTEIVAESGCGKTQLCLQL LCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNP++HIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NRNS LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLK+LCSS RRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVIREGDGIMNGSELAQRR-TRRWLHVVFAPHLPKSSCEYVINREGVMGVES 293
           EEV+ EG+G++NGSEL QRR TRRWLHVVFAPHLPKSSCEYVINREGV+GVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Tan0012678 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-101
Identity = 180/297 (60.61%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPL 62
           PENLL    T +K T GC I+D  + GGI+C+SLTEIVAESGCGKTQLCLQL LC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPTNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNE-EVIRE-GDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVES 293
           SR++  ++++  +   N S    R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Tan0012678 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-101
Identity = 180/297 (60.61%), Postives = 229/297 (77.10%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPL 62
           PENLL    T +K T GC I+D  + GGI+C+SLTEIVAESGCGKTQLCLQL LC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPTNHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP +H+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++ P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDGL+ LRIGNL+YL SSGRRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNE-EVIRE-GDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGVMGVES 293
           SR++  ++++  +   N S    R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Tan0012678 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-23
Identity = 81/305 (26.56%), Postives = 139/305 (45.57%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSN 64
           ++LH  ++  + T  C  +D  +GGGI+C  +TEI    G GKTQ+ +QL +  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSN------PTNHIFVEPVHSAHQLF 124
           GGL   ++YI TE  F   R  Q+++A      +++         N + ++P      +F
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 -----------DIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALF 184
                       ++  +E F++        +++++DSI   FR D+D    DL +R+ + 
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 273

Query: 185 FKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAW 244
            +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +W
Sbjct: 274 SEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDSW 333

Query: 245 ANCVNSRLFLSRNEEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGV 293
           ++   +R+ L              NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 334 SHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 355

[Close]

BLAST of Tan0012678 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-23
Identity = 81/305 (26.56%), Postives = 139/305 (45.57%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSN 64
           ++LH  ++  + T  C  +D  +GGGI+C  +TEI    G GKTQ+ +QL +  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSN------PTNHIFVEPVHSAHQLF 124
           GGL   ++YI TE  F   R  Q+++A      +++         N + ++P      +F
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 -----------DIMPKIESFLANRNSQLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALF 184
                       ++  +E F++        +++++DSI   FR D+D    DL +R+ + 
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 297

Query: 185 FKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGLNALRIGNLKYLCSSGRRVCPALGLAW 244
            +++ K   LAK++SLAVVL NQV      S+G   L +               ALG +W
Sbjct: 298 SEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDSW 357

Query: 245 ANCVNSRLFLSRNEEVIREGDGIMNGSELAQRRTRRWLHVVFAPHLPKSSCEYVINREGV 293
           ++   +R+ L              NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 358 SHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 379

[Close]

BLAST of Tan0012678 vs. TAIR 10
Match: AT5G20850.1 (RAS associated with diabetes protein 51 )

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-18
Identity = 76/271 (28.04%), Postives = 119/271 (43.91%), Query Frame = 0


Query: 17  TFGCPIIDRSVGGGIACNSLTEIVAESGCGKTQLCLQLCLCAQLPLSNGGLNASSLYIHT 76
           T G   +D+ + GGI   S+TE+  E   GKTQLC  LC+  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSYPQFSNPTNHIFVEPVHSAHQLFDIMPKIESFLANRNSQLP 136
           E  F  +RL Q++  F  +        N  +    ++ HQ   ++      +  R +   
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADVLE--NVAYARAYNTDHQSRLLLEAASMMIETRFA--- 225

Query: 137 TRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMG 196
             L+++DS  AL+R+DF     +L  R     K    L+ LA  + +AVV+TNQVV  + 
Sbjct: 226 --LLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 285

Query: 197 SSDGLNALRIGNLKYLCSSGRRVCPALGLAWANCVNSRLFLSRNEEVIREGDGIMNGSEL 256
            S                +G +  P  G   A+   +RL        +R+G         
Sbjct: 286 GS-------------ALFAGPQFKPIGGNIMAHATTTRL-------ALRKG--------- 337

Query: 257 AQRRTRRWLHVVFAPHLPKSSCEYVINREGV 288
             R   R   V+ +P LP++   + I+ EGV
Sbjct: 346 --RAEERICKVISSPCLPEAEARFQISTEGV 337

The following BLAST results are available for this feature:

BLAST of Tan0012678 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	2.5e-100	60.61	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	8.6e-37	35.22	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	1.2e-33	36.04	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	1.5e-33	33.77	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O15315	2.3e-26	30.14	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]

BLAST of Tan0012678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150781.1	2.4e-153	93.20	DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot...	[more]
KAG7020901.1	9.1e-153	92.15	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022938282.1	9.1e-153	92.15	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]
XP_022969693.1	2.0e-152	91.81	DNA repair protein XRCC3 homolog [Cucurbita maxima]	[more]
XP_038890688.1	4.5e-152	91.81	DNA repair protein XRCC3 homolog [Benincasa hispida]	[more]

BLAST of Tan0012678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK93	1.2e-153	93.20	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A6J1FDM2	4.4e-153	92.15	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A6J1I1Q9	9.9e-153	91.81	DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=...	[more]
A0A5A7UPR6	3.7e-152	92.83	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	3.7e-152	92.83	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]

BLAST of Tan0012678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	1.7e-101	60.61	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	1.7e-101	60.61	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	4.2e-23	26.56	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	4.2e-23	26.56	RAS associated with diabetes protein 51C	[more]
AT5G20850.1	3.1e-18	28.04	RAS associated with diabetes protein 51	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 25..53 score: 41.03 coord: 143..167 score: 19.49
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..292
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 1..293 e-value: 2.0E-52 score: 176.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..292 e-value: 1.6E-63 score: 216.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..288
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 12..288 e-value: 2.7E-43 score: 148.1
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..191 score: 46.341991
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..287 e-value: 2.71942E-81 score: 243.645

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012678.1	Tan0012678.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding