Tan0012396 (gene) Snake gourd v1

Overview


Name	Tan0012396
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein L11
Location	LG03: 76345937 .. 76347507 (-)
RNA-Seq Expression	Tan0012396
Synteny	Tan0012396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTGAAAGAGATTCTAACGAGGCGACCTGTCGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCAGCGCCACCGGTCGGTCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACTTTCGAGTTCACCGTCAAGTCGCCATCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCCGGGAGCAGCCGCCCAGGCCACGTGGTCGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTATATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAATGCAATAGCTAAAGTTCTAGGGTTTTTCTCCCCTTGTTCTTCAGTATCTCGATTCAAATTGAGCGTTTTTTCAGTGACCTCATTTTTCTTACTGTGAATTAATGTTAGTCTGTATGCTAAGTCGGCAATCTGTTCTGCTTACATGTTGAGTTTCTTATTAATACGATAGAAGTTGATTCTATTCCAACGATTTACTTCTGAATTTCAAGGAAAGGGGAACTGGGATAATAGCTAAATTTGGTCATCTTTCTTGAAAGCAAAGTTAATTTTGGTAATGAGAGAGACAAGTTTTAACCAATTTGTAGGACGTGATCTAGTTGGTTTCATTTTGATCAATGAATGGGTTGCCTTTGCTTGCATTAGCGTTATTAGCTCCTCCCAATTTGATATCTCTTATGTGAAATTCCTGAATTTGATTTACTTTGTGAAACTTCTTCGTTGTCATCTGTCTAAGTAGTAGTTCTGGACCTGTTCATTTCCAGATATGTGGAAAGATCAACTATTGTATGCTTTTATGTAGTAGTTCTAAGTAGTAGATACAACAGGCTCTTGAGTCAATATGTTAAATCTAGATATGTGGATTTGTTATAGATATTTCAGCCATTAGGATGTCAAATACCATCATCACTTATTGTATGCTTTTATGCCCATTTCACATTATACTTATTTGTATGTGCTTTTTTTTACTTGGGATCTTCATTTATTTGGTTACTAATATTAGTTGGTTTGAGAGAAATTTAAATGAAAATTTAATTTAGTTGTAATGGATACTTCTTTTGTGTGAAGAAGTTTGTGTTTATATTTTATAAAAGTGCTCAGAAGAATCTGCACTAAGAAAATTAATGCTTACACAGGTTCTCATGACATTTAATCGAAGTGGACTTGAACTTTTGCCATTTAAGACTGAAAATTTGAGGAACTATTGCTATGACAATCAGTTTGTTGTGCAAATTTGATATTGAGCTTGATGTCTACTGACTTGTGCTCTTATGTTCTTATGTGATAATATTAACTTAAGTTTTTATGTCTGGGGTAGTCTGCTTTTTGCCTATCCAACTTGTAAACTATTGGGTGTAGAGGTAAGCTACATATTTTTATCTAGT

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTAACGAGGCGACCTGTCGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCAGCGCCACCGGTCGGTCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACTTTCGAGTTCACCGTCAAGTCGCCATCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCCGGGAGCAGCCGCCCAGGCCACGTGGTCGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTATATGCCACTAGAATCCATTTGTTCTCATGACATTTAATCGAAGTGGACTTGAACTTTTGCCATTTAAGACTGAAAATTTGAGGAACTATTGCTATGACAATCAGTTTGTTGTGCAAATTTGATATTGAGCTTGATGTCTACTGACTTGTGCTCTTATGTTCTTATGTGATAATATTAACTTAAGTTTTTATGTCTGGGGTAGTCTGCTTTTTGCCTATCCAACTTGTAAACTATTGGGTGTAGAGGTAAGCTACATATTTTTATCTAGT

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTAACGAGGCGACCTGTCGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCAGCGCCACCGGTCGGTCCGGCGCTCGGTCAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACTTTCGAGTTCACCGTCAAGTCGCCATCGGTCACTTGGTACCTGAAGAAAGCCGCCGGGATCGAGTCCGGGAGCAGCCGCCCAGGCCACGTGGTCGCCTCCACGCTCTCCCTCAAGCACGTTTACGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTATATGCCACTAGAATCCATTTGTTCTCATGACATTTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYMPLESICSHDI

Homology

[Close]

BLAST of Tan0012396 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-27
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LSLKH+YEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

[Close]

BLAST of Tan0012396 vs. ExPASy Swiss-Prot
Match: Q3SSY4 (50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplK PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-26
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYC 128
            D +F F +K+P + ++LK+AA I+SGS  PG   A TL+   V EIA+ K  D  C
Sbjct: 63  ADRSFTFEMKTPPMAYFLKQAAKIQSGSKTPGRDAAGTLTRAQVREIAEKKMKDLNC 119

[Close]

BLAST of Tan0012396 vs. ExPASy Swiss-Prot
Match: Q07KJ7 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-26
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYC 128
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   V EIA+ K  D  C
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNC 119

[Close]

BLAST of Tan0012396 vs. ExPASy Swiss-Prot
Match: A7HWQ0 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 56/114 (49.12%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSD 125
            D +F F +K+P  +++LKKAA + SGS  PG   A T+++    EIA+ K +D
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD 116

[Close]

BLAST of Tan0012396 vs. ExPASy Swiss-Prot
Match: Q2RQU9 (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSD 125
            D TF +  K+P +T++LKKAAGI  GS+ PG   A T++++ V +IA+ K  D
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD 116

[Close]

BLAST of Tan0012396 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 4.6e-70
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. NCBI nr
Match: XP_008449842.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1 54S ribosomal protein L19 [Cucumis melo var. makuwa] >TYK21704.1 54S ribosomal protein L19 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 273.5 bits (698), Expect = 1.0e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. NCBI nr
Match: XP_004142176.1 (54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypothetical protein Csa_018122 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-69
Identity = 132/136 (97.06%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL++KH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLSLKH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. ExPASy TrEMBL
Match: A0A1S3BMZ5 (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. ExPASy TrEMBL
Match: A0A0A0KWT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.5e-70
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLS+KH+YEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL+LKH+Y+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESIC 137
           KQSDPYCQYMPLESIC
Sbjct: 121 KQSDPYCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-64
Identity = 116/135 (85.93%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLS++HVYEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESIC 137
           Q+DP+CQYMPLESIC
Sbjct: 123 QTDPFCQYMPLESIC 136

[Close]

BLAST of Tan0012396 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-19
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYC 128
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC 187

[Close]

BLAST of Tan0012396 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.7e-04
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSLKHVYEIAKVKQSDPYC 128
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  V +IA+VK  +  C
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC 147

The following BLAST results are available for this feature:

BLAST of Tan0012396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UTK2	1.0e-27	49.17	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q3SSY4	4.3e-26	49.57	50S ribosomal protein L11 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 1...	[more]
Q07KJ7	5.6e-26	49.57	50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605...	[more]
A7HWQ0	1.2e-25	49.12	50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130...	[more]
Q2RQU9	1.2e-25	50.00	50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]

BLAST of Tan0012396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901904.1	4.6e-70	98.53	54S ribosomal protein L19, mitochondrial [Benincasa hispida]	[more]
XP_008449842.1	1.0e-69	97.79	PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1...	[more]
XP_022132985.1	1.0e-69	97.79	54S ribosomal protein L19, mitochondrial [Momordica charantia]	[more]
XP_004142176.1	1.3e-69	97.79	54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypotheti...	[more]
KAG7034038.1	2.3e-69	97.06	mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0012396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9U7	5.0e-70	97.79	54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BU21	5.0e-70	97.79	54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3BMZ5	5.0e-70	97.79	54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602...	[more]
A0A0A0KWT6	6.5e-70	97.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1	[more]
A0A6J1IPM9	1.5e-69	97.06	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Tan0012396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35490.1	1.1e-64	85.93	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	5.2e-19	43.59	plastid ribosomal protein l11	[more]
AT5G51610.1	4.7e-04	33.93	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..139 e-value: 1.9E-50 score: 183.6
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..137
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..139 score: 17.855917
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 17..136 e-value: 3.27893E-56 score: 169.939
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 13..136 e-value: 9.5E-47 score: 156.4
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 78..138 e-value: 5.6E-20 score: 73.3
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..134
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..75 e-value: 1.3E-24 score: 85.7
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 11..77 e-value: 6.3E-27 score: 95.1
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..137 e-value: 3.7E-19 score: 69.0
None	No IPR available	PANTHER	PTHR11661:SF22	SUBFAMILY NOT NAMED	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0012396.1	Tan0012396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome