Tan0012186 (gene) Snake gourd v1

Overview
NameTan0012186
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMuDRA-like transposase
LocationLG06: 21934851 .. 21935411 (+)
RNA-Seq ExpressionTan0012186
SyntenyTan0012186
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACAAGTGTATTTTCATTAGGTTTGGCAGTGTATGGGAGGAGGATACATGTACTTATACCGGAGGTCATATGACTGGTATTGTTGTGCCATTAACGATAACATTCGAGAAATTTCGGTCGGAGGTTTATAATGTTACATCGATCGGCGAGTATGCTTATGACATTGAAATGAGGGTGAAACTCAATACAGACTATCAATCACCGCCAATGTACATAAGTAACAATCGAGATGTTATATTTTTTATGAATCATTCGGGCGTTGCAAGAGTCCAAGTCTGGATAACAACTGTACAGAAACAACTCATCGCAAACGGTGTAGAAGCTGATGAAGATAGAGATAAGGACCCGGAGTACAACCCTTTGCACGAAGAAGAAAGTGATGAGGTTGCAGAATACGAAGAAGATGAAGAGGAATACGACGATGAAGAGGAATATGAAGATATAGTATACAACGACGAGTACGAGTCAGTGGTATCAAACGAATCTGAAGTCGAAGAAGAAGGTAGAGACGATGGGTACGTTCCAAATGATGGGTTTCATTTTGATAACGTATAG

mRNA sequence

ATGGACAACAAGTGTATTTTCATTAGGTTTGGCAGTGTATGGGAGGAGGATACATGTACTTATACCGGAGGTCATATGACTGGTATTGTTGTGCCATTAACGATAACATTCGAGAAATTTCGGTCGGAGGTTTATAATGTTACATCGATCGGCGAGTATGCTTATGACATTGAAATGAGGGTGAAACTCAATACAGACTATCAATCACCGCCAATGTACATAAGTAACAATCGAGATGTTATATTTTTTATGAATCATTCGGGCGTTGCAAGAGTCCAAGTCTGGATAACAACTGTACAGAAACAACTCATCGCAAACGGTGTAGAAGCTGATGAAGATAGAGATAAGGACCCGGAGTACAACCCTTTGCACGAAGAAGAAAGTGATGAGGTTGCAGAATACGAAGAAGATGAAGAGGAATACGACGATGAAGAGGAATATGAAGATATAGTATACAACGACGAGTACGAGTCAGTGGTATCAAACGAATCTGAAGTCGAAGAAGAAGGTAGAGACGATGGGTACGTTCCAAATGATGGGTTTCATTTTGATAACGTATAG

Coding sequence (CDS)

ATGGACAACAAGTGTATTTTCATTAGGTTTGGCAGTGTATGGGAGGAGGATACATGTACTTATACCGGAGGTCATATGACTGGTATTGTTGTGCCATTAACGATAACATTCGAGAAATTTCGGTCGGAGGTTTATAATGTTACATCGATCGGCGAGTATGCTTATGACATTGAAATGAGGGTGAAACTCAATACAGACTATCAATCACCGCCAATGTACATAAGTAACAATCGAGATGTTATATTTTTTATGAATCATTCGGGCGTTGCAAGAGTCCAAGTCTGGATAACAACTGTACAGAAACAACTCATCGCAAACGGTGTAGAAGCTGATGAAGATAGAGATAAGGACCCGGAGTACAACCCTTTGCACGAAGAAGAAAGTGATGAGGTTGCAGAATACGAAGAAGATGAAGAGGAATACGACGATGAAGAGGAATATGAAGATATAGTATACAACGACGAGTACGAGTCAGTGGTATCAAACGAATCTGAAGTCGAAGAAGAAGGTAGAGACGATGGGTACGTTCCAAATGATGGGTTTCATTTTGATAACGTATAG

Protein sequence

MDNKCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMRVKLNTDYQSPPMYISNNRDVIFFMNHSGVARVQVWITTVQKQLIANGVEADEDRDKDPEYNPLHEEESDEVAEYEEDEEEYDDEEEYEDIVYNDEYESVVSNESEVEEEGRDDGYVPNDGFHFDNV
Homology
BLAST of Tan0012186 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-17
Identity = 47/134 (35.07%), Postives = 82/134 (61.19%), Query Frame = 0

Query: 1   MDNKCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR 60
           M  KC+  R+GS W+E+   Y GG +TGIVVP+T+ +++F++ +Y V ++    +D+ MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKLNTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT-----TVQKQLIANGVEADEDRD 120
           VK   D+++PP+YI N+ DV  F+    ++RVQ+++T         ++I +G+  D   +
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHDENVKMIHDGIGVDRQYE 239

Query: 121 KDPEYNPLHEEESD 130
              E+N   +EE D
Sbjct: 240 ASYEFN---QEECD 250

BLAST of Tan0012186 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-10
Identity = 47/168 (27.98%), Postives = 92/168 (54.76%), Query Frame = 0

Query: 4   KCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMRVKL 63
           K +FIRFG  WE++T +Y GG + GI+VPLT+T+++ ++ ++ +  + +  YD+ +RV  
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64  NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWITTVQKQLI-ANGVEADEDRDKD-PEYN 123
           +    SPPM+++++ D+ F +    V++V ++++T+ ++ I       ++D ++  P   
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRESIDIQSSRLNQDGEQSIPNGG 124

Query: 124 PLHEEESDEVAEYEEDEEEYDDEEEYEDIVYNDEYESVVSNESEVEEE 170
            + EE S  V           DE    D+   D Y S + + S +  E
Sbjct: 125 SVPEEGSTRV-----------DEWGLNDVYMQDMYSSDLRHASPLTVE 161

BLAST of Tan0012186 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-09
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1   MDNKCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR 60
           M  KC+ I +   W+E+   Y GG + GIVVP+T+ +E+ ++ +Y + +I    +D+ MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKLNTDYQSPPMYI 75
           VK   D+++PP YI
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of Tan0012186 vs. NCBI nr
Match: KAA0056639.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-08
Identity = 31/99 (31.31%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 1  MDNKCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR 60
          M N  I +R+G  W+E    Y GG + GIVV   IT +  + E+YN+T +    +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKLNTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
             ++  + ++PP  +SN+RD+ F++       V ++++
Sbjct: 61 CIYEIKVENEAPPFELSNDRDLKFYILSENPLEVPLYVS 99

BLAST of Tan0012186 vs. NCBI nr
Match: TYK07864.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-07
Identity = 29/94 (30.85%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 6  IFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR--VKL 65
          I +R G  W+E    Y GG + GIVVP  IT++  +SE+Y++  +    +DI++R   ++
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
            + ++PP  +SN+RD+ F++       V ++++
Sbjct: 66 KGEKKAPPFELSNDRDLKFYILSENPLEVPLYLS 99

BLAST of Tan0012186 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-10
Identity = 47/168 (27.98%), Postives = 92/168 (54.76%), Query Frame = 0

Query: 4   KCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMRVKL 63
           K +FIRFG  WE++T +Y GG + GI+VPLT+T+++ ++ ++ +  + +  YD+ +RV  
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64  NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWITTVQKQLI-ANGVEADEDRDKD-PEYN 123
           +    SPPM+++++ D+ F +    V++V ++++T+ ++ I       ++D ++  P   
Sbjct: 65  HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRESIDIQSSRLNQDGEQSIPNGG 124

Query: 124 PLHEEESDEVAEYEEDEEEYDDEEEYEDIVYNDEYESVVSNESEVEEE 170
            + EE S  V           DE    D+   D Y S + + S +  E
Sbjct: 125 SVPEEGSTRV-----------DEWGLNDVYMQDMYSSDLRHASPLTVE 161

BLAST of Tan0012186 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 31/99 (31.31%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 1  MDNKCIFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR 60
          M N  I +R+G  W+E    Y GG + GIVV   IT +  + E+YN+T +    +DI++R
Sbjct: 1  MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61 --VKLNTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
             ++  + ++PP  +SN+RD+ F++       V ++++
Sbjct: 61 CIYEIKVENEAPPFELSNDRDLKFYILSENPLEVPLYVS 99

BLAST of Tan0012186 vs. ExPASy TrEMBL
Match: A0A5D3C9E9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00080 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 29/94 (30.85%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 6  IFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR--VKL 65
          I +R G  W+E    Y GG + GIVVP  IT++  +SE+Y++  +    +DI++R   ++
Sbjct: 6  ILVRHGGAWDEGRIKYEGGVLKGIVVPKEITYKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
            + ++PP  +SN+RD+ F++       V ++++
Sbjct: 66 KGEKKAPPFELSNDRDLKFYILSENPLEVPLYLS 99

BLAST of Tan0012186 vs. ExPASy TrEMBL
Match: A0A5A7TQS3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00270 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 29/94 (30.85%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 6  IFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR--VKL 65
          I +R G  W+E+   Y GG + GIVVP  IT +  +SE+Y++  +    +DI++R   ++
Sbjct: 6  ILVRHGGAWDEERRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEI 65

Query: 66 NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
            + ++PP  +SN+RD+ F++       V ++++
Sbjct: 66 KGEKEAPPFELSNDRDLKFYILSENPLEVPLYLS 99

BLAST of Tan0012186 vs. ExPASy TrEMBL
Match: A0A5A7UB55 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001530 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 30/94 (31.91%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 6  IFIRFGSVWEEDTCTYTGGHMTGIVVPLTITFEKFRSEVYNVTSIGEYAYDIEMR--VKL 65
          I +R G  W+E    Y GG + GIVVP  IT +  +SE+Y++  +    +DI++R   K+
Sbjct: 6  ILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYKI 65

Query: 66 NTDYQSPPMYISNNRDVIFFMNHSGVARVQVWIT 98
            + ++PP  +SN+RD+ F++       V ++++
Sbjct: 66 KGEKEAPPFELSNDRDLKFYILSENPLEVPLYLS 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038888098.14.6e-1735.07uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_022154925.15.5e-1027.98uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038902319.12.7e-0937.84trichohyalin-like [Benincasa hispida][more]
KAA0056639.16.7e-0831.31MuDRA-like transposase [Cucumis melo var. makuwa][more]
TYK07864.14.3e-0730.85MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1DL082.6e-1027.98uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7UT043.2e-0831.31MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3C9E92.1e-0730.85MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7TQS33.6e-0730.85MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5A7UB554.7e-0731.91MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0012186.1Tan0012186.1mRNA