Tan0011970 (gene) Snake gourd v1

Overview
NameTan0011970
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransmembrane protein
LocationLG11: 61750449 .. 61752804 (+)
RNA-Seq ExpressionTan0011970
SyntenyTan0011970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTACTTGTGAAGCGCAGAACCCTAAAGCAGGGGCCCAAACCCTGTGTGTGTGTTTCGCTCTCTTGATCAAATCCGGCCGTGACCGGAGACTGCAGAAATGAAATCGGCGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCTGATCAGTCTCATCTGTTGCTTGCCACTAGACCTCCCAGGTACTTCCTTTTCTCTCTCTTCTCTTCCTTTATTGTCTTTGGATTCGCCTTCTCCTTCATACTGCTTCATCGGCTCCACCTTTTTGGGCCTTCAATCGCTCCCTTCTGCTCCTGCTGCTGTTTATTACCGATTTTTCCTTTGCCAGTGGGTTTTTTGTTTTTCCTTTTTTAATCGCTGCTGCCGGAATCACCAGTGGCTCAGTTTGTTGGCTGTTTTTGTTATTGATTTTGTACAATTGGAATATTGAGGGCACACTTCACATTTCTGACAACAGTGTGTCTTCTCTGAATTCTGTTCGATTACTCTTTTTCCCTTTTCTTTTTTAATGGCTCACTTCCATTTCCATTCTGATGATTCACTTTTTCTTAATTCTTTTGGATTGGAGCTAGCTTTCTTGTAGGTAGTTGATGCCTCCTTTTGTGGGCTTGTTTTTTATGCCCTTGTAATTCTTTCATTTTTTTTTTTGTTTCTTAAAACAAAATATTCACTTCCATTTTCATTGTATTGAGTATTATAAGGTGGTCGAGTCCTTTGTGCTATTATTTAGAACATGTTGTTAGAGAGGAATTTGAGAATCTCTATAGAAAGTTTGTGTTGAAGTACTGATATATGATTAAATTTACTCTAATCAATAACTTTAGCTTTTGAGTTATTGAGTTGAGTGGTGTTTTAGCATTGCATGGGAGAGTGTCATTTCCTCCAGAAAATATCATTTGATAATCTCTTGTTCGGTCTTGTGCCGATGTCCATGCCTAGTGAGGAGTTAAATATTGATATGTTTCATTTTGGATAAGCACAACTGAACATTAAAAAAAAAAAAGCTTCATTAAGGATCTTTCGCAGGGACTTTTGTTTTTTGGTAACCATCCTTTATTTTCAATTCTTTAACATCTATGATTGTTGTGTTTGTTTGTGGGCTATGGCTTTCATTTCTTTTAAGTTTTGGCTTTCAATTCTTCAACATCTATGATTGTTAAGATTAAAGATGTATTGAATTTCATTTCTTTTAAGTTTTGGGAACTTTTGTGATTGATAAAAAAGGAAGGATTGAGAGAATTTATATGCTAGATTGAATATCATTTCTTTTAAGTTTTGGGTGGGAACTTATGTGATTGTTTCTTTTCATCTGCACTGAATCTATAAAAATTCAGTCTTCCTCATTTGTTCTAATATGATTAATGTGACTGTTATTTAAGCAGGCAAGTAGTATCAATATTGACTTGTTCAAAGCTATGTGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGCGTCAATCGATGGGTTTCCAAGCTATTGAGGAGATTGAAAGATGATTGATATGTCCATCCCCTTGTTTTGGTATGCCAGTTTCATTGATTGTTATGGATAGAAATGAATTGCTTATTTGTTGCTCAATTAGGAAAGACGGCCCAATGTTTAGTTTGTATTTTTTTTCTTTTTTCTTTTGATATGAAAAAAGAAACATTGAGAGCCTTGGAAATATAAAGTTTGAAAACCAACCATTTTTTTCTTTATTTTTTTTCTAGCAGATTGATCAATTGCCATGAAAGTTGTCGCTTCAGCAGGAAAGTCACCAATGTCAAGCGCAATTTTGCATGTTATTTTTGTTTGTTTTAGGTTAAATTAATAGTTTAATCTTCAAAGTTCTAGGTTTATGTCTATCTGATCCTTGAACTTACAAAAATGTCTAATAGGCCCGTGAATTTTCAAATATTGGTTTCTGTTTGGTCCCTAGACTTAAAAAAGTGTGTAATATATCTTAAACTTTGAAATTTGTGTCCAATAAGTCTCTAAATTTTCATTTTTGTATCTAATAAGTCATTCATCCATTCAACATTCTAAAACATTCACGAAATTACTATACACAAAATTGAAAGTTCAGGGTTTTATTAGACATTTTATTCATTTATATATTTGATAGATCAATTAGTTTTTAAAAAATGTTGAAAATGTCAGAGACCTACTAGACACAAAATTGAAATTTCTTGGTCTATTAGATATTTAAAATTCAGGGACTTATTAGACACAAACCTAAAAGTTTAGGTACTAAAATTTTAATTTAACCTTTGTTTTATGATCTTTCTACTTTCTATCTTTTTTCCCCTCTTCTACAACGTAG

mRNA sequence

CTTTACTTGTGAAGCGCAGAACCCTAAAGCAGGGGCCCAAACCCTGTGTGTGTGTTTCGCTCTCTTGATCAAATCCGGCCGTGACCGGAGACTGCAGAAATGAAATCGGCGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCTGATCAGTCTCATCTGTTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCAATATTGACTTGTTCAAAGCTATGTGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGCGTCAATCGATGGGTTTCCAAGCTATTGAGGAGATTGAAAGATGATTGATATGTCCATCCCCTTGTTTTGCAGATTGATCAATTGCCATGAAAGTTGTCGCTTCAGCAGGAAAGTCACCAATGTCAAGCGCAATTTTGCATGTTATTTTTGTTTGTTTTAGGTTAAATTAATAGTTTAATCTTCAAAGTTCTAGGTTTATGTCTATCTGATCCTTGAACTTACAAAAATGTCTAATAGGCCCGTGAATTTTCAAATATTGGTTTCTGTTTGGTCCCTAGACTTAAAAAAGTGTGTAATATATCTTAAACTTTGAAATTTGTGTCCAATAAGTCTCTAAATTTTCATTTTTGTATCTAATAAGTCATTCATCCATTCAACATTCTAAAACATTCACGAAATTACTATACACAAAATTGAAAGTTCAGGGTTTTATTAGACATTTTATTCATTTATATATTTGATAGATCAATTAGTTTTTAAAAAATGTTGAAAATGTCAGAGACCTACTAGACACAAAATTGAAATTTCTTGGTCTATTAGATATTTAAAATTCAGGGACTTATTAGACACAAACCTAAAAGTTTAGGTACTAAAATTTTAATTTAACCTTTGTTTTATGATCTTTCTACTTTCTATCTTTTTTCCCCTCTTCTACAACGTAG

Coding sequence (CDS)

ATGAAATCGGCGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCTGATCAGTCTCATCTGTTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCAATATTGACTTGTTCAAAGCTATGTGCTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGCGTCAATCGATGGGTTTCCAAGCTATTGAGGAGATTGAAAGATGATTGA

Protein sequence

MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
Homology
BLAST of Tan0011970 vs. NCBI nr
Match: XP_038893067.1 (uncharacterized protein LOC120081950 [Benincasa hispida])

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-31
Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKS  S SSVE LRN GEGIASALSSSDQS LLLATRPPRQVVSI TCSKLCA+CFVAGV
Sbjct: 1  MKSGVSSSSVEVLRNRGEGIASALSSSDQSRLLLATRPPRQVVSIWTCSKLCAVCFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 VVGYSLKRCVNRWVSKLLRRLKDD 84

BLAST of Tan0011970 vs. NCBI nr
Match: XP_022974252.1 (uncharacterized protein LOC111472885 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 3.3e-31
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKSAA PSSVEALR+ GEGIASALSSSDQS LLLATRPPRQVVSILTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRS-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          +VGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 LVGYSLKRCVNRWVSKLLRRLKDD 83

BLAST of Tan0011970 vs. NCBI nr
Match: XP_023540347.1 (uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 hypothetical protein SDJN03_10201, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028499.1 hypothetical protein SDJN02_09680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.6e-31
Identity = 79/84 (94.05%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKSAA PSSVEALRN GEGIASALSSSDQS LLLATRPPRQVVSILTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VVGYSLKRRVNRWVSKLLRRLKDD 83

BLAST of Tan0011970 vs. NCBI nr
Match: XP_022956291.1 (uncharacterized protein LOC111458016 [Cucurbita moschata])

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKSAA PSSVEALRN GEGIASALSSSDQS LLLATRPPRQVVSILTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKR VNRWVSKLLRRLK+D
Sbjct: 61 VVGYSLKRRVNRWVSKLLRRLKED 83

BLAST of Tan0011970 vs. NCBI nr
Match: KGN51411.1 (hypothetical protein Csa_007923 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.4e-28
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKS  S SSVEALRN GEGIAS+LSS D S  LLATRPPRQVVSI TCSKLCA+CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKD 84
          VVGYSLKRCVNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

BLAST of Tan0011970 vs. ExPASy TrEMBL
Match: A0A6J1I9S5 (uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKSAA PSSVEALR+ GEGIASALSSSDQS LLLATRPPRQVVSILTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRS-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          +VGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 LVGYSLKRCVNRWVSKLLRRLKDD 83

BLAST of Tan0011970 vs. ExPASy TrEMBL
Match: A0A6J1GW53 (uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC111458016 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKSAA PSSVEALRN GEGIASALSSSDQS LLLATRPPRQVVSILTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKR VNRWVSKLLRRLK+D
Sbjct: 61 VVGYSLKRRVNRWVSKLLRRLKED 83

BLAST of Tan0011970 vs. ExPASy TrEMBL
Match: A0A0A0KUK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MKSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGV 60
          MKS  S SSVEALRN GEGIAS+LSS D S  LLATRPPRQVVSI TCSKLCA+CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKD 84
          VVGYSLKRCVNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

BLAST of Tan0011970 vs. ExPASy TrEMBL
Match: W9RT53 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.1e-19
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 2  KSAASPSSVEALRNGGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGVV 61
          KSA+S SS   +    EGI++ALSS DQS LL+ +RPPR VVS+ TCSKLCAICFV GVV
Sbjct: 16 KSASSSSSTFDIPRVNEGISAALSSPDQSRLLV-SRPPRNVVSLWTCSKLCAICFVVGVV 75

Query: 62 VGYSLKRCVNRWVSKLLRRLKDD 85
          VGY+LKR V RW S+LL+RLKDD
Sbjct: 76 VGYTLKRRVRRWASRLLKRLKDD 97

BLAST of Tan0011970 vs. ExPASy TrEMBL
Match: A0A5N5I158 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_036587 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 16 GGEGIASALSSSDQSHLLLATRPPRQVVSILTCSKLCAICFVAGVVVGYSLKRCVNRWVS 75
          G EG+A+ALSSSDQSH+LL  RP RQ+VS+ TCSKLC ICFVAG+VVGY+LKR V  W S
Sbjct: 30 GTEGLAAALSSSDQSHILL-NRPARQLVSLWTCSKLCTICFVAGIVVGYTLKRRVRSWTS 89

Query: 76 KLLRRLKDD 85
          KLL++++DD
Sbjct: 90 KLLKKIRDD 97

BLAST of Tan0011970 vs. TAIR 10
Match: AT1G19240.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   KSAASPSS------VEALRNGGEGIASALSSS-DQSHLLLATRPPRQVVSILTCSKLCAI 61
           KSAAS SS       + L       A  L+++ D     L TRPP   VS+ TCSKLCA+
Sbjct: 16  KSAASSSSSSLSDFADNLMQDKRAAAGNLTTTYDAGSGTLVTRPP-SGVSVWTCSKLCAV 75

Query: 62  CFVAGVVVGYSLKRCVNRWVSKLLRRLKDD 85
            FVAGV VGY+LKR V RW SKLLRR+KDD
Sbjct: 76  FFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038893067.12.5e-3190.48uncharacterized protein LOC120081950 [Benincasa hispida][more]
XP_022974252.13.3e-3192.86uncharacterized protein LOC111472885 [Cucurbita maxima][more]
XP_023540347.19.6e-3194.05uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 ... [more]
XP_022956291.12.8e-3092.86uncharacterized protein LOC111458016 [Cucurbita moschata][more]
KGN51411.13.4e-2884.34hypothetical protein Csa_007923 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1I9S51.6e-3192.86uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885... [more]
A0A6J1GW531.4e-3092.86uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A0A0KUK21.7e-2884.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1[more]
W9RT539.1e-1967.47Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1[more]
A0A5N5I1582.3e-1769.57Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
Match NameE-valueIdentityDescription
AT1G19240.13.3e-1353.33unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0011970.1Tan0011970.1mRNA
Tan0011970.2Tan0011970.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane