Tan0011704 (gene) Snake gourd v1

Overview


Name	Tan0011704
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Integrase catalytic domain-containing protein
Location	LG04: 46992290 .. 46992550 (+)
RNA-Seq Expression	Tan0011704
Synteny	Tan0011704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTTCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCTCCTCTGAAAGCGTCCTTCCTTCGCAATGCCCGAGCATCCATCCAATGCATTCTTTTCGATCTTGTACGGACGCGGAACACCAACCCGTTCTCGATACAAAAAAGCAAACTTATTGCATAAAGAATCTGTATTCATCGACGTGA

mRNA sequence

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTTCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCTCCTCTGAAAGCGTCCTTCCTTCGCAATGCCCGAGCATCCATCCAATGCATTCTTTTCGATCTTGTACGGACGCGGAACACCAACCCGTTCTCGATACAAAAAAGCAAACTTATTGCATAAAGAATCTGTATTCATCGACGTGA

Coding sequence (CDS)

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTTCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCTCCTCTGAAAGCGTCCTTCCTTCGCAATGCCCGAGCATCCATCCAATGCATTCTTTTCGATCTTGTACGGACGCGGAACACCAACCCGTTCTCGATACAAAAAAGCAAACTTATTGCATAAAGAATCTGTATTCATCGACGTGA

Protein sequence

MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRSCTDAEHQPVLDTKKQTYCIKNLYSST

Homology

[Close]

BLAST of Tan0011704 vs. ExPASy Swiss-Prot
Match: P93276 (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-31
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
          MFQFAKF KSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 60

Query: 61 CTDAEHQPVLDTKK 75
          CT    Q  L+T K
Sbjct: 61 CT----QGTLNTTK 70

[Close]

BLAST of Tan0011704 vs. NCBI nr
Match: TXG46219.1 (hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical protein EZV62_028286 [Acer yangbiense])

HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 508 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 567

Query: 61  CTD-AEHQPVLDTKKQTY 78
           CT   EHQP LD     Y
Sbjct: 568 CTQYTEHQPNLDETTSNY 585

[Close]

BLAST of Tan0011704 vs. NCBI nr
Match: PHT25004.1 (hypothetical protein CQW23_35343 [Capsicum baccatum])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 55  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 114

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 115 CTLCRLAKHRRHKRYTEHQPNLDEKKE 141

[Close]

BLAST of Tan0011704 vs. NCBI nr
Match: YP_173374.1 (hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical protein NitaMp164 [Nicotiana tabacum] >OIT02104.1 putative mitochondrial protein [Nicotiana attenuata] >OIT22081.1 putative mitochondrial protein [Nicotiana attenuata] >OIT29650.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34301.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34302.1 putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 107 CTLCRLAKHRRHKRYTEHQPNLDEKKE 133

[Close]

BLAST of Tan0011704 vs. NCBI nr
Match: OIT03333.1 (putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 107 CTLCRLAKHRRHKWYTEHQPNLDEKKE 133

[Close]

BLAST of Tan0011704 vs. NCBI nr
Match: KZM80319.1 (hypothetical protein DCAR_031801 [Daucus carota subsp. sativus] >KZM87143.1 hypothetical protein DCAR_024277 [Daucus carota subsp. sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.8e-30
Identity = 67/87 (77.01%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP +D+KK+
Sbjct: 107 CTLCRLASHRLHKRYTEHQPNIDSKKK 133

[Close]

BLAST of Tan0011704 vs. ExPASy TrEMBL
Match: A0A5C7GP19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 508 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 567

Query: 61  CTD-AEHQPVLDTKKQTY 78
           CT   EHQP LD     Y
Sbjct: 568 CTQYTEHQPNLDETTSNY 585

[Close]

BLAST of Tan0011704 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 107 CTLCRLAKHRRHKRYTEHQPNLDEKKE 133

[Close]

BLAST of Tan0011704 vs. ExPASy TrEMBL
Match: A0A1J6INJ4 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 107 CTLCRLAKHRRHKRYTEHQPNLDEKKE 133

[Close]

BLAST of Tan0011704 vs. ExPASy TrEMBL
Match: A0A2G2UWA2 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35343 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 55  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 114

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 115 CTLCRLAKHRRHKRYTEHQPNLDEKKE 141

[Close]

BLAST of Tan0011704 vs. ExPASy TrEMBL
Match: A0A1J6IE49 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_29225 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106

Query: 61  CT------------DAEHQPVLDTKKQ 76
           CT              EHQP LD KK+
Sbjct: 107 CTLCRLAKHRRHKWYTEHQPNLDEKKE 133

[Close]

BLAST of Tan0011704 vs. TAIR 10
Match: ATMG00030.1 (hypothetical protein )

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-32
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFSSESVLPSQCPSIHPMHSFRS 60
          MFQFAKF KSKERRLATELGYGFPIGDPWITDGISPWPF+SESVLPSQCP IHPMHSFRS
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 60

Query: 61 CTDAEHQPVLDTKK 75
          CT    Q  L+T K
Sbjct: 61 CT----QGTLNTTK 70

The following BLAST results are available for this feature:

BLAST of Tan0011704 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93276	7.9e-31	85.14	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Tan0011704 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG46219.1	4.4e-31	85.90	hypothetical protein EZV62_028250 [Acer yangbiense] >TXG46255.1 hypothetical pro...	[more]
PHT25004.1	2.9e-30	78.16	hypothetical protein CQW23_35343 [Capsicum baccatum]	[more]
YP_173374.1	2.9e-30	78.16	hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical pro...	[more]
OIT03333.1	2.9e-30	78.16	putative mitochondrial protein [Nicotiana attenuata]	[more]
KZM80319.1	3.8e-30	77.01	hypothetical protein DCAR_031801 [Daucus carota subsp. sativus] >KZM87143.1 hypo...	[more]

BLAST of Tan0011704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GP19	2.1e-31	85.90	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1	[more]
Q5M9R1	1.4e-30	78.16	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]
A0A1J6INJ4	1.4e-30	78.16	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE...	[more]
A0A2G2UWA2	1.4e-30	78.16	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35343 PE=4 SV=1	[more]
A0A1J6IE49	1.4e-30	78.16	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_29225 PE...	[more]

BLAST of Tan0011704 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00030.1	5.6e-32	85.14	hypothetical protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044987	Uncharacterized mitochondrial protein AtMg00030-like	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011704.1	Tan0011704.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding