Tan0011558 (gene) Snake gourd v1

Overview
NameTan0011558
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCACTA en-spm transposon protein
LocationLG10: 58650257 .. 58651740 (-)
RNA-Seq ExpressionTan0011558
SyntenyTan0011558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCATCCAAGTCAAGATCATGATGTAGTTGTTGTGTTAGAAGAGGAGAATGCTTTGGAGGTTAAACGTTCGACAGCGCAACATCGTACACGAGCTTCAGGTAATACTTAGAGCATATTAACGTATACTTATAAATGTTTCTCTATTGTTTAATTAGTTGATCCATCCTTATTTCAGGATCTAGATCACGTTCTAGAGTAGCCTCTAGATCGTGAGGCAGGAGGGCTAGAGGGCATAGCCGAAGGATTGAGTTAGAGCGCTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACCATCACCCGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGTCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTGTAAGTTTACTTAGGTTAATATGCATTTTCAATATCGTGAATTTAATCATTAATGGATGCTTACTAAGTTATTACTTAATTTACAGACATACTTTATCGTGGATTTGACCAAACATCATATAAATAGATACGTAGAGCGACTGATATCATCCACATTCAAGGAATATAGGGTAGAATTGTATCAATACTACCTTGAGTTTGACGACCCCAAAGAGGCTCCTGAATGTCCTCTAGAAAGAATCGATAATCAAGCTGATTGGAATATGTTATGTGATCGATGGGAGACCGCTGAATGGAAGGTATACTTTCTTGTTTTACTTTATTATATGTATAACTCATTCACTTTATTCAATATACTGACCATAAATTGTTGAAGGAAATAACGGAGAAAAATAAGAAAAGTCGAGCCAATCTTCCTCACAACCATCGAACTGGGTACAAGTCATTTGTTCAAGTGCAGAACGAATTGGTTAGACACAAACTCATGTTTTTTCTTATTTATATTATTTTCTTATCATGACTAATAGTGTGCCTTTGAATTTCAGAAGATACAAAAGGGTCATGAAGTAGGCCAAGTTGATTTGTTCCATGAAAGTCACTTCAGCATAAAGGACGGATGGGTGAACTACCATGCGAGGGATGCATATGTAAGTTATATTTAATCATATTGCATTAGTTTATGTGTTTATCATCCATTTTAACCCCATTGTATTATGAATGTAGTTGAAAATGCAACAACTTCTTGAAGCATCATCACAAGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATGGTTTTGGGTACTCGATCAGGCCACATAAAAGGTCTTGGTTGGGACCCAAATTCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGAAGGTGGAGCATATGCAAGCTGAGATTGGTAACTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGACTGAATTCACAAAGTACATGGATGAAAGGCAGGGTGAAGGTTCTTCAAACCCCTAG

mRNA sequence

ATGGTGCATCCAAGTCAAGATCATGATGTAGTTGTTGTGTTAGAAGAGGAGAATGCTTTGGAGGTTAAACGTTCGACAGCGCAACATCGTACACGAGCTTCAGGCAGGAGGGCTAGAGGGCATAGCCGAAGGATTGAGTTAGAGCGCTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACCATCACCCGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGTCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTTTGAAAATGCAACAACTTCTTGAAGCATCATCACAAGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATGGTTTTGGGTACTCGATCAGGCCACATAAAAGGTCTTGGTTGGGACCCAAATTCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGAAGGTGGAGCATATGCAAGCTGAGATTGGTAACTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGACTGAATTCACAAAGTACATGGATGAAAGGCAGGGTGAAGGTTCTTCAAACCCCTAG

Coding sequence (CDS)

ATGGTGCATCCAAGTCAAGATCATGATGTAGTTGTTGTGTTAGAAGAGGAGAATGCTTTGGAGGTTAAACGTTCGACAGCGCAACATCGTACACGAGCTTCAGGCAGGAGGGCTAGAGGGCATAGCCGAAGGATTGAGTTAGAGCGCTATGTCAATGCACATGGTAGAATACCCATCGAGATCGATGAGAAGGTCGACAAACCAGTGTGTACTAAGGCCACTACGTTCAGTGGAGCCATTGGTACCATCACCCGAGATACAATTCCACTGCATTATAAAACGTGGAGCGACGTCCCAAAGCAAGTTCGAGACAGCATAAAAGATCGACTCTCTTTGAAAATGCAACAACTTCTTGAAGCATCATCACAAGAAGGATCTGAGCCAATCTCACAGTCAGAAGTTTGTAAAATGGTTTTGGGTACTCGATCAGGCCACATAAAAGGTCTTGGTTGGGACCCAAATTCTAGTTCGTCGTCTAGCGTCACATCTTCTTCCCAACATGAAAAAGAGCTTGAAAAGAAGGTGGAGCATATGCAAGCTGAGATTGGTAACTTAACGACGAAGTTGTCCTCATGGGAAGAAAGATGGACTGAATTCACAAAGTACATGGATGAAAGGCAGGGTGAAGGTTCTTCAAACCCCTAG

Protein sequence

MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIKDRLSLKMQQLLEASSQEGSEPISQSEVCKMVLGTRSGHIKGLGWDPNSSSSSSVTSSSQHEKELEKKVEHMQAEIGNLTTKLSSWEERWTEFTKYMDERQGEGSSNP
Homology
BLAST of Tan0011558 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 5.5e-30
Identity = 119/377 (31.56%), Postives = 151/377 (40.05%), Query Frame = 0

Query: 1   MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASG-------------RRARGHSRRIEL 60
           + H  Q+ +  ++L+ ++   +  ST +  T ASG             RR RGHSR +EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  ERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIK 120
           +R+VN HGRI IEIDE+V KPVC  AT FS AIGTI R+TIPL  K WSDV K+VRD + 
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVV 639

Query: 121 DRL--------------------------------------------------------- 180
           D+L                                                         
Sbjct: 640 DQLLSYFDFDVGKKHVKKYVLQRVQNTFKEYRSDLYKHYRRFKDPKEARACPPKRITDAT 699

Query: 181 ------------------------------------------------------------ 214
                                                                       
Sbjct: 700 DWNLLCNRWETPEWKKKTETNKKSRSKIPYLHRTGSKSFVQVQSEMKIKEGRDVDQVDLF 759

BLAST of Tan0011558 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-27
Identity = 119/404 (29.46%), Postives = 151/404 (37.38%), Query Frame = 0

Query: 1   MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASG-------------RRARGHSRRIEL 60
           + H  Q+ +  ++L+ ++   +  ST +  T ASG             RR RGHSR +EL
Sbjct: 332 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 391

Query: 61  ERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIK 120
           +R+VN HGRI IEIDE+V KPVC  AT FS AIGTI R+TIPL  K WSDV K+VRD + 
Sbjct: 392 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVV 451

Query: 121 DRL--------------------------------------------------------- 180
           D+L                                                         
Sbjct: 452 DQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRS 511

Query: 181 ------------------------------------------------------------ 214
                                                                       
Sbjct: 512 DLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETNKKSRSKIPYLHR 571

BLAST of Tan0011558 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-27
Identity = 119/404 (29.46%), Postives = 151/404 (37.38%), Query Frame = 0

Query: 1   MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASG-------------RRARGHSRRIEL 60
           + H  Q+ +  ++L+ ++   +  ST +  T ASG             RR RGHSR +EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  ERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIK 120
           +R+VN HGRI IEIDE+V KPVC  AT FS AIGTI R+TIPL  K WSDV K+VRD + 
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVV 639

Query: 121 DRL--------------------------------------------------------- 180
           D+L                                                         
Sbjct: 640 DQLLVTLRFIYAFGYYLTCKCLIAQLLLTMQSYFDFDVGKKHVKKYVLQRVQNTFKEYRS 699

Query: 181 ------------------------------------------------------------ 214
                                                                       
Sbjct: 700 DLYKHYRRFKDPKEARACPPKRITDATDWNLLCNRWETPEWKKKTETNKKSRSKIPYLHR 759

BLAST of Tan0011558 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-20
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 1   MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASG-------------RRARGHSRRIEL 60
           + H  Q+ +  ++L+ ++   +  ST +  T ASG             RR RGHSR +EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  ERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIK 116
           +R+VN HGRI IEIDE+V KPVC  AT FS AIGTI R+TIPL  K WSDV K+VRD + 
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVV 639

BLAST of Tan0011558 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-20
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 1   MVHPSQDHDVVVVLEEENALEVKRSTAQHRTRASG-------------RRARGHSRRIEL 60
           + H  Q+ +  ++L+ ++   +  ST +  T ASG             RR RGHSR +EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  ERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDVPKQVRDSIK 116
           +R+VN HGRI IEIDE+V KPVC  AT FS AIGTI R+TIPL  K WSDV K+VRD + 
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNTIPLRCKDWSDVSKEVRDLVV 639

BLAST of Tan0011558 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0

Query: 102 VRDSIKDRLSLKMQQLLEASSQEGSEPISQSEVCKMVLGTRSGHIKGLGWDPNSS----- 161
           V D+ +D     MQ L++A +QEG EP++Q E C+ VLG R  H+KGLG+ P  +     
Sbjct: 146 VNDNAEDAYE-NMQNLIKAPTQEGCEPVTQPEACRKVLGDRPDHVKGLGYGPQPTLCKRG 205

Query: 162 SSSSVTSSSQHEKELEKKVEHMQAEIGNLTTK-------LSSWEERWTEFTKYMDERQGE 214
           SSS+VTSS+ +EKELEKKVE M+ E+  + T+       +S+WE+RW E +++M  RQG+
Sbjct: 206 SSSNVTSSTLYEKELEKKVEDMEVEMREMKTENQRLKESVSTWEDRWNEISRFMAGRQGD 265

BLAST of Tan0011558 vs. ExPASy TrEMBL
Match: A0A5A7T4Q4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold119G00100 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-13
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 25  STAQHRTRASGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTIT 84
           S++Q  T    RRA+  SR +ELER+V  +GRI + I  + +KP+   A  FS AIG   
Sbjct: 31  SSSQQATTTPRRRAQ--SRLLELERHVAINGRISMTIAPRAEKPISPHAVRFSQAIGVCV 90

Query: 85  RDTIPL----HYKTWSDVPKQVRDSIKDRL-------SLKMQQLLEASSQ---EGSEPIS 144
           R T P+    H++ +SD P++ R ++ + L              +  + Q   EGS+P S
Sbjct: 91  RKTFPVCCLKHFQKYSD-PEEARANLPNTLVGRDEDWHFLYDHYINRAFQPTLEGSQPFS 150

Query: 145 QSEVCKMVLGTRSGHIKGLGWDPN-------SSSSSSVTSSSQHEKELEKKVEHMQA 181
           + E+C  VLG R G+ KGLGW P        S+S+SS + S   +KE+E +V+  +A
Sbjct: 151 KDEICDQVLGRRPGYSKGLGWGPKPKARRTASASNSSTSYSPSTKKEIELQVKLHEA 204

BLAST of Tan0011558 vs. ExPASy TrEMBL
Match: A0A5A7TT86 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 67/197 (34.01%), Postives = 94/197 (47.72%), Query Frame = 0

Query: 25  STAQHRTRASGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTIT 84
           S++Q  T    RRA+  SR +ELE YV  + RIP+ I    +KP+   A  FS  IG   
Sbjct: 31  SSSQQTTPTPRRRAQ--SRLLELECYVAINERIPMTIAPGAEKPISPHAVRFSQVIGVCV 90

Query: 85  RDTIPLHYKTWSDVPKQVRDSIK-------------DRLSLKMQ---------------- 144
           R T P     W+DV ++  + +K             DR+ L  +                
Sbjct: 91  RKTFPARCLKWADVGREYIEVVKGDLQLAERRGQPVDRVELFRETHVRAGTFVSQAVEDA 150

Query: 145 --QLLEASSQ---EGSEPISQSEVCKMVLGTRSGHIKGLGWDPN-------SSSSSSVTS 181
             Q+LE  SQ   +GS+P S+ E+C  VLG R G+ KGLGW P        S+SSSS + 
Sbjct: 151 HNQMLELQSQPTPDGSQPPSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASSSSRSC 210

BLAST of Tan0011558 vs. ExPASy TrEMBL
Match: A0A5A7TEQ7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001060 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 53/144 (36.81%), Postives = 74/144 (51.39%), Query Frame = 0

Query: 39  RGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGTITRDTIPLHYKTWSDV 98
           R  SR +EL+ YV+A+GRI + I   V+KP+   A  FS AIG   R+T  +    W+D+
Sbjct: 202 RAQSRLLELKYYVHANGRISMLIVPDVEKPILPHAIRFSQAIGVCVRNTFSVRCLKWTDI 261

Query: 99  PKQVRDSIKDRLSLKMQQLLEASSQEGSEPISQSEVCKMVLGTRSGHIKGLGWDPNSSSS 158
               R  I              +  +GS+P S+ E+C+ +LG R G+ KGLGW P S S 
Sbjct: 262 ESNSRTPI-------------PAYPDGSQPFSRDEICETMLGRRLGYSKGLGWGPKSKSC 321

Query: 159 SSV------TSSSQHEKELEKKVE 177
                    TS SQ   EL+ +VE
Sbjct: 322 KPTSGTGVSTSWSQSMVELQLRVE 332

BLAST of Tan0011558 vs. ExPASy TrEMBL
Match: A0A5D3BKN7 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 63/199 (31.66%), Postives = 97/199 (48.74%), Query Frame = 0

Query: 23  KRSTAQHRTRASGRRARGHSRRIELERYVNAHGRIPIEIDEKVDKPVCTKATTFSGAIGT 82
           +R+ +Q  T+   R  RG+ R IEL+++V  HG+I IEI+E+  KPV T A      IGT
Sbjct: 362 ERNGSQLGTKKRARGVRGYGRNIELDKFVEKHGKIKIEINEEEGKPVTTFAPKIVLGIGT 421

Query: 83  ITRDTIPLHYKTWSDVPKQVRDSIKDRLSLKMQ-------------------------QL 142
             R+TIPL  + W  VP  VR  + DRL  K +                         + 
Sbjct: 422 AVRNTIPLSCENWKAVPMGVRKLVIDRLEKKKKGCDVDEIEVFHETHFRDKEGWINDGKR 481

Query: 143 LEASSQEGSEPISQSEVCKMVLGTRSGHIKGLGWDPNSSSSSSVTSSSQHEKELEKKVEH 197
              S++ G + IS ++ C+ VLG+RS        +P S  S     SS  EKE + ++ +
Sbjct: 482 CIQSTEAGVQTISSAKACEFVLGSRSMQTV----NPRSGESLRSNVSSTREKE-KNEMAY 541

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038887409.15.5e-3031.56poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
XP_038887413.17.4e-2729.46uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida][more]
XP_038887408.17.4e-2729.46poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida][more]
XP_038887411.11.4e-2046.88poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412... [more]
XP_038887410.11.4e-2046.88poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DUH32.3e-1845.97uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7T4Q46.6e-1335.59CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TT862.5e-1234.01CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TEQ73.3e-1236.81CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BKN73.3e-1231.66DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0011558.1Tan0011558.1mRNA