Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA
mRNA sequence
ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA
Coding sequence (CDS)
ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA
Protein sequence
MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKKI
Homology
BLAST of Tan0011427 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 100 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 159
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 160 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 219
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 220 SGTKSMPSSSGNKKWKKKK 237
BLAST of Tan0011427 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. NCBI nr
Match:
KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. ExPASy TrEMBL
Match:
A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 218 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 277
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 278 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 337
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 338 SGTKSMPSSSGNKKWKKKK 355
BLAST of Tan0011427 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
BLAST of Tan0011427 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query: 1 MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160
Query: 61 SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ GEAN+ +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220
Query: 121 SGTKSCSSSSGLKKTQKKK 140
SGTKS SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SMH8 | 6.6e-46 | 74.82 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
A0A5D3CPJ6 | 6.6e-46 | 74.82 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
A0A5A7V4M1 | 6.6e-46 | 74.82 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... | [more] |
A0A5A7TU93 | 6.6e-46 | 74.82 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
A0A5A7TWB9 | 6.6e-46 | 74.82 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
Match Name | E-value | Identity | Description | |