Tan0011427 (gene) Snake gourd v1

Overview


Name	Tan0011427
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG02: 68681946 .. 68682368 (+)
RNA-Seq Expression	Tan0011427
Synteny	Tan0011427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA

mRNA sequence

ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA

Coding sequence (CDS)

ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGTCCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA

Protein sequence

MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKKI

Homology

[Close]

BLAST of Tan0011427 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 100 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 159

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 160 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 219

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 220 SGTKSMPSSSGNKKWKKKK 237

[Close]

BLAST of Tan0011427 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 218 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 277

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 278 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 337

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 338 SGTKSMPSSSGNKKWKKKK 355

[Close]

BLAST of Tan0011427 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Tan0011427 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.6e-46
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKKTQKKK 140
           SGTKS  SSSG KK +KKK
Sbjct: 221 SGTKSMPSSSGNKKWKKKK 238

The following BLAST results are available for this feature:

BLAST of Tan0011427 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	1.4e-45	74.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.4e-45	74.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.4e-45	74.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.4e-45	74.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	1.4e-45	74.82	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0011427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	6.6e-46	74.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.6e-46	74.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	6.6e-46	74.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	6.6e-46	74.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	6.6e-46	74.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0011427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..140
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 16..92 e-value: 5.5E-10 score: 39.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..133
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011427.1	Tan0011427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding