Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTGGATTCGGATGGAACGAGGAGCGCAAGTGCGTGGAGGCCGAGAAAGACATTCGATGCATGGGTGATGGTAATGGAAATCAACATATAATTTCTTATTTTAAAATCTCAACATGTCACTGTAAAATGATCTTTATGCATATTGTTTATGATGCAGGCTCATCCACATGCAAAAGGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA
mRNA sequence
ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA
Coding sequence (CDS)
ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCGTGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAGTGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGAAAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCGTGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA
Protein sequence
MAGSSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDLEDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
Homology
BLAST of Tan0011337 vs. NCBI nr
Match:
KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 159.5 bits (402), Expect = 2.7e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S SK KH WT ED LV+ LL LV G WR DNGTF+PGYL QV+K+MKEK+ +
Sbjct: 87 ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+PNLES V+ILKKQY IAEM+GP CS
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PFP F DL ++FG+DRATG +TP +M S A D EDD+ + + +P +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266
BLAST of Tan0011337 vs. NCBI nr
Match:
TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 159.5 bits (402), Expect = 2.7e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S SK KH WT ED LV+ LL LV G WR DNGTF+PGYL QV+K+MKEK+ +
Sbjct: 87 ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+PNLES V+ILKKQY IAEM+GP CS
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PFP F DL ++FG+DRATG +TP +M S A D EDD+ + + +P +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266
BLAST of Tan0011337 vs. NCBI nr
Match:
TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ SK KH WT +D LV+ LL LV GGWRA+N TF+P YL QV+K+MKEK+P +
Sbjct: 2 ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+ NLESRV+ LKKQY AIA+M+GPACS
Sbjct: 62 IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PF F DL ++FG+D+ATG + +MAS A D EDD++ + + +P +
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 181
BLAST of Tan0011337 vs. NCBI nr
Match:
XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])
HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ SK KH WT +D LV+ LL LV GGWRA+N TF+P YL QV+K+MKEK+P +
Sbjct: 34 ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 93
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+ NLESRV+ LKKQY AIA+M+GPACS
Sbjct: 94 IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 153
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PF F DL ++FG+D+ATG + +MAS A D EDD++ + + +P +
Sbjct: 154 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 213
BLAST of Tan0011337 vs. NCBI nr
Match:
XP_031741735.1 (uncharacterized protein At2g29880-like [Cucumis sativus])
HSP 1 Score: 146.4 bits (368), Expect = 2.3e-31
Identity = 82/200 (41.00%), Postives = 111/200 (55.50%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ SK KH WT E+ GGWRA NGTF+PGYL QV+K+MKEK+P +
Sbjct: 34 ASTNSKATKHRWTTIEE-------------GGWRAYNGTFKPGYLVQVQKLMKEKIPGSN 93
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+PNLE RV+ILKKQY AI EM+GP+CS
Sbjct: 94 IQVTPNLEPRVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKGHPNARG 153
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PFP F DL ++FG+DRATG +TP +M S D+ EDD++ + + +P +
Sbjct: 154 LLNKPFPYFYDLEIVFGRDRATGGRCKTPVEMCSHNTRDIEEDDMDINLEDFDIPNPHGL 213
BLAST of Tan0011337 vs. ExPASy TrEMBL
Match:
A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S SK KH WT ED LV+ LL LV G WR DNGTF+PGYL QV+K+MKEK+ +
Sbjct: 87 ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+PNLES V+ILKKQY IAEM+GP CS
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PFP F DL ++FG+DRATG +TP +M S A D EDD+ + + +P +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266
BLAST of Tan0011337 vs. ExPASy TrEMBL
Match:
A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 88/200 (44.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S SK KH WT ED LV+ LL LV G WR DNGTF+PGYL QV+K+MKEK+ +
Sbjct: 87 ASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESN 146
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+PNLES V+ILKKQY IAEM+GP CS
Sbjct: 147 IQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARY 206
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PFP F DL ++FG+DRATG +TP +M S A D EDD+ + + +P +
Sbjct: 207 LLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGL 266
BLAST of Tan0011337 vs. ExPASy TrEMBL
Match:
A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 8.6e-32
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ SK KH WT +D LV+ LL LV GGWRA+N TF+P YL QV+K+MKEK+P +
Sbjct: 2 ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+ NLESRV+ LKKQY AIA+M+GPACS
Sbjct: 62 IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PF F DL ++FG+D+ATG + +MAS A D EDD++ + + +P +
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 181
BLAST of Tan0011337 vs. ExPASy TrEMBL
Match:
A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 8.6e-32
Identity = 83/200 (41.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ SK KH WT +D LV+ LL LV GGWRA+N TF+P YL QV+K+MKEK+P +
Sbjct: 34 ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 93
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACS------------------------------ 123
+ V+ NLESRV+ LKKQY AIA+M+GPACS
Sbjct: 94 IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 153
Query: 124 LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPV 173
L N+PF F DL ++FG+D+ATG + +MAS A D EDD++ + + +P +
Sbjct: 154 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHGL 213
BLAST of Tan0011337 vs. ExPASy TrEMBL
Match:
A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 74/169 (43.79%), Postives = 105/169 (62.13%), Query Frame = 0
Query: 4 SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVD 63
+S+ K +H WT ED LV+ LL L+ GGWR DNGTF+ YL Q++K+MKEK+ +
Sbjct: 329 TSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGSN 388
Query: 64 LHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFNDLAVIFGKDRATGAGAQTPS 123
+ V+PNLE R++ILKKQY + SL N+PFP F DL V+FG+DRATG +T
Sbjct: 389 IQVTPNLELRIKILKKQYTGHPNVR----SLLNKPFPYFYDLEVVFGRDRATGGRCKTSV 448
Query: 124 DMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEV 172
+M S D EDD++ + + +P +++ GED +TPTS +V
Sbjct: 449 EMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDV 493
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0033487.1 | 2.7e-35 | 44.00 | uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa] | [more] |
TYK26842.1 | 2.7e-35 | 44.00 | uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa] | [more] |
TYJ96933.1 | 1.8e-31 | 41.50 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
XP_008455678.1 | 1.8e-31 | 41.50 | PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo] | [more] |
XP_031741735.1 | 2.3e-31 | 41.00 | uncharacterized protein At2g29880-like [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7SW62 | 1.3e-35 | 44.00 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3DTL0 | 1.3e-35 | 44.00 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3BC95 | 8.6e-32 | 41.50 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3C252 | 8.6e-32 | 41.50 | uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... | [more] |
A0A5A7U3R2 | 2.8e-30 | 43.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |