Tan0009408 (gene) Snake gourd v1

Overview


Name	Tan0009408
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 32634480 .. 32635287 (+)
RNA-Seq Expression	Tan0009408
Synteny	Tan0009408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACATTTACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGGCCCTATGGAGGTGTTGTTGATGACACCCCCTGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTTTGTCCCTCAATGTACTGAAACTCGGGTTCGGTCCCGTGCATCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACAACATCAAAATACTTATTTGTAGATTTGACCAACACATTCAAGTACGCAACCGTAATTTCTTGGTATAATCTACTGGCTAGTTGTACTTTTATCGCATTTTCATACGAAAATATTTGATATGTGTTTCAGGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACTGACGATCGATGAACCTCCTCCTCCGGATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCACCACGCGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAAAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAGACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATAGGATATCTACGTCGGGAGGTATGTAA

mRNA sequence

ATGACAAACATTTACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGGCCCTATGGAGGTGTTGTTGATGACACCCCCTGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTTTGTCCCTCAATGTACTGAAACTCGGGTTCGGTCCCGTGCATCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACAACATCAAAATACTTATTTGTAGATTTGACCAACACATTCAAGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACTGACGATCGATGAACCTCCTCCTCCGGATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCACCACGCGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAAAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAGACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATAGGATATCTACGTCGGGAGGTATGTAA

Coding sequence (CDS)

ATGACAAACATTTACATGACACGAAGTCCTGCAATTCAACCGTTAGACGGTCTGAATCCAGAATCTGAAGGGCCCTATGGAGGTGTTGTTGATGACACCCCCTGTAGGGAGGACGTGCCTCTTCATCAACAAAGTTTTGTCCCTCAATGTACTGAAACTCGGGTTCGGTCCCGTGCATCGAACCGACGTATCCGGACGTCGACTACGCGTGGTACAAGCCAGTTCATGCAACGGATTGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTCAAGAAGTGAAAGACGACGTTCATGTCTTGCGGGCAGAAATGCAAGACATGAAGGACAAACTTGTAGACATGCACGACAACATCAAAATACTTATTTGTAGATTTGACCAACACATTCAAGTCCCAACCATCGTTCGTACTCCAGAAAATCCCGCAGGACATGCATCGGTCAGACTGACGATCGATGAACCTCCTCCTCCGGATGTCGAAGATGTGGATGTGTTAGTGTGCGATCTTCCCACGTCCGATGCACCACGCGATGGGGTTCAATCAACAGAGGTTGAATGTCAGACCGACGACATTTCAGCTGTTGATCCGGTCCCTTTCGAAAATGTGGACCAAGCAAAAACTGTGTTGATCAGTCATTCGTCAAAGAGGAAGTCAGACGAATTGGAGACTCCAAACCTTCCGTCGAAGAAACATAGGATATCTACGTCGGGAGGTATGTAA

Protein sequence

MTNIYMTRSPAIQPLDGLNPESEGPYGGVVDDTPCREDVPLHQQSFVPQCTETRVRSRASNRRIRTSTTRGTSQFMQRIERRLGMIEDSVQEVKDDVHVLRAEMQDMKDKLVDMHDNIKILICRFDQHIQVPTIVRTPENPAGHASVRLTIDEPPPPDVEDVDVLVCDLPTSDAPRDGVQSTEVECQTDDISAVDPVPFENVDQAKTVLISHSSKRKSDELETPNLPSKKHRISTSGGM

Homology

The following BLAST results are available for this feature:

BLAST of Tan0009408 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009408 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009408 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009408 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009408.1	Tan0009408.1	mRNA