Tan0007863 (gene) Snake gourd v1

Overview
NameTan0007863
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
LocationLG06: 7417403 .. 7419016 (+)
RNA-Seq ExpressionTan0007863
SyntenyTan0007863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGATCAAATCTCTAGTCTCGATATCAATTGTCGTTGCTCTTCTCTTGTTCTCTGAATCTCTAGCCACTTCCGCCGCCGTTCGCGGCAGCGCTTCGTCAAATTCTCTCACCGGAAAACTTCATCGGAACATCCTTCAGACGACCGTCGAGTCCTCCGTCGAACGGAAGATAAATGTTCATATCAAAAAGCGGATCCGATCTGGACGAGTTGGCGGCCCCCATAAATCGGCGGCGAATCGGAGCCGACTCGCCTCGTTTGGGGTTGGATCTGTGTTGTGTATCTGCACTTTTTTGGGATTGTTCTCCTGAATCATTTGTAAAATTTGGATTCTGTTTTTATTCATTCATTTATCTGATGAAAAATTAGTTTTTTTTTTGGATTCTGTTTCAACCTATCTCTTAGTCGAGAATATTTGTCTAAATCTTAACCAGTTGAAATATATGAAAGGATCGAATCTCATAGCAGAAGCGTCGTAATCGCTTGCTCACATTTACGTTGTGAAAGATGCACAAAAACAGAAAGTTAAACATGAAATAGGGGAAGAAGATGAAATTGCCTTTGAAGACACCTATTCTAGTGATCCTACTTTTACAAACAAGTACATATCATAAAACAATATAAGTTTGAGCATGTGTGGAAAACCTTTATGGAAATGAAAAACTTAAACGACACTTATTCAAGTTTCAAGTTTAAATGTATGAAATTGAAAGTTATGGTTGAAATTGATATAATCTATAAGTTTGAGGTTTAAATTGATTAAATTTAAAGGGGGAAAGGAACTGTTCAGAGATGATTTTGGTGAAATGACCGACCGGGAATCACATCTCAAATTTTACCTTCATAATATTCAATGGTCGAAATACCAAAATTGTCCCTCTATTTAAAAAGAAAATTTTCTCTAGCTCTCATTCTTTCTCTTGATTGCGTCATTTGGAGGCTCTATCGACTGGAGGATTTTCGCCATTGCTTCATCTTCATTCGTGATTGCTTGCTCGATTTCTCTCAGGTAGGTGTTATCTTCATCGTATTTGAGTTTTGGACTGGTTGAGTTTTGGATTTTCTTGTTATCTTCATCTGTGTTTGAGTTTGTTTACTGGTGCTTTTGTCGATTGTTGTTTTTGTTGTTTCGATTTGTCTTCAAGTGTTGCTTGAAGTGGGTTTGTTGTTGTTGTGATTTATTGGGTCATTCGTTAATTGATTTGTGATTTATTGCCTCCACCATGGACGAGTTGCAAGGAAATCAATGGTCGCAGAAGGTTTTGGAAAGTAAATTTGAAGGTATGAGTGGAATGGTTAGTTTTAAGAATAATGGCATATGGTCAAATATACCCACCTTCCAAATCATTAACGTTGTGGGTAAAAGCTATAAAGAGATTGCATTTTGGTCCCACCATTTGGATTCTCTGATAAAGTATCTCAAAAAACAAGCGGAGAACAAGTAGTATGATGGGGCCATAGGAGACTTCAGGATAGCTGCATATCGACTTAAGGAAATAAAAACAGAGCAAAGTGTAATCTCTTACCAACCCATTAGACAAATATTTTGCCATAAGTCCTATCAAGGAGATGCCATCTTTCTTTTTTTCTAATGGAAATAGGTCAAATAG

mRNA sequence

ATGGCTGCGATCAAATCTCTAGTCTCGATATCAATTGTCGTTGCTCTTCTCTTGTTCTCTGAATCTCTAGCCACTTCCGCCGCCGTTCGCGGCAGCGCTTCGTCAAATTCTCTCACCGGAAAACTTCATCGGAACATCCTTCAGACGACCGTCGAGTCCTCCGTCGAACGGAAGATAAATGTTCATATCAAAAAGCGGATCCGATCTGGACGAGTTGGCGGCCCCCATAAATCGGCGGCGAATCGGAGCCGACTCGCCTCGTTTGGGGTTGGATCTGTCAAATAG

Coding sequence (CDS)

ATGGCTGCGATCAAATCTCTAGTCTCGATATCAATTGTCGTTGCTCTTCTCTTGTTCTCTGAATCTCTAGCCACTTCCGCCGCCGTTCGCGGCAGCGCTTCGTCAAATTCTCTCACCGGAAAACTTCATCGGAACATCCTTCAGACGACCGTCGAGTCCTCCGTCGAACGGAAGATAAATGTTCATATCAAAAAGCGGATCCGATCTGGACGAGTTGGCGGCCCCCATAAATCGGCGGCGAATCGGAGCCGACTCGCCTCGTTTGGGGTTGGATCTGTCAAATAG

Protein sequence

MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQTTVESSVERKINVHIKKRIRSGRVGGPHKSAANRSRLASFGVGSVK
Homology
BLAST of Tan0007863 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-14
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQT--------TVE 60
          MAA+KSLVS+++ +ALLLFSESL T++AV  S  SNSLTG L RN+LQT        +VE
Sbjct: 1  MAALKSLVSVAL-LALLLFSESL-TASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVE 60

Query: 61 SSVERKINVHIKKRIRSGRVGGPHKSAANRSRLASFGVGSV 94
          SS ERK+NVHIK+R+R     G   SAANRSR+AS GVGSV
Sbjct: 61 SSPERKMNVHIKRRMRPVAT-GTRSSAANRSRIASIGVGSV 98

BLAST of Tan0007863 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQTTVE--SSVERK 60
          MAAIK+L+SI++ +ALLLF ESL TSAAV   AS+ SL G L RNI+QTT +     E+K
Sbjct: 1  MAAIKALLSIAL-IALLLFFESLPTSAAVHRGAST-SLAGILRRNIVQTTADHHQVAEKK 60

Query: 61 INVHIKKRIRSGRV--GGPHKSAANRSRLASFGVGSV 94
           NVHIK+R+R   V  G P  SAANRSR A  GVGS+
Sbjct: 61 FNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSM 95

BLAST of Tan0007863 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAA-VRGSASSNSLTGKLHRNILQTTVE--SSVER 60
          MAAIKSL+ IS+ +ALL FSESL+TSAA  RG  +SNS+TG L RN+LQT     +  E 
Sbjct: 1  MAAIKSLLFISL-LALLFFSESLSTSAADCRG--ASNSVTGMLRRNVLQTATHEIADSEG 60

Query: 61 KINVHIKK----RIRSGRVG----GPHKSAANRSRLASFGVG 92
          K+NVHIK+    RIR    G    G  KSAA+RS++ASFG+G
Sbjct: 61 KMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLG 99

BLAST of Tan0007863 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAA-VRGSASSNSLTGKLHRNILQTTVE--SSVER 60
          MAAIKSL+SIS+ +ALL FSESL+TSAA  RG  +SNS+T  L RNILQT     +  E 
Sbjct: 1  MAAIKSLISISL-LALLFFSESLSTSAANCRG--ASNSVTAMLRRNILQTATHEIADSEG 60

Query: 61 KINVHIKK-------RIRSGRVGGPHKSAANRSRLASFGVG 92
          K+NV IKK        I +G   G   SAANRSR+ SFG+G
Sbjct: 61 KMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLG 98

BLAST of Tan0007863 vs. NCBI nr
Match: KAG7025561.1 (E3 ubiquitin-protein ligase MIEL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQTTVE--SSVERK 60
          MAAIK+L+SI++ +ALLLF ESL TSAAV   AS+ SL G L RNI+QTT +     E+K
Sbjct: 1  MAAIKALLSIAL-IALLLFFESLPTSAAVHRGAST-SLAGILRRNIVQTTADHHQVAEKK 60

Query: 61 INVHIKKRIRSGRV--GGPHKSAANRSRLA 87
           NVHIK+R+R   V  G P  S ANRSR A
Sbjct: 61 FNVHIKRRMRMRPVLIGRPKTSKANRSREA 88

BLAST of Tan0007863 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAA-VRGSASSNSLTGKLHRNILQTTVE--SSVER 60
          MAAIKSL+ IS+ +ALL FSESL+TSAA  RG  +SNS+TG L RN+LQT     +  E 
Sbjct: 1  MAAIKSLLFISL-LALLFFSESLSTSAADCRG--ASNSVTGMLRRNVLQTATHEIADSEG 60

Query: 61 KINVHIKK----RIRSGRVG----GPHKSAANRSRLASFGVG 92
          K+NVHIK+    RIR    G    G  KSAA+RS++ASFG+G
Sbjct: 61 KMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLG 99

BLAST of Tan0007863 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAA-VRGSASSNSLTGKLHRNILQTTVE--SSVER 60
          MAAIKSL+SIS+ +ALL FSESL+TSAA  RG  +SNS+T  L RNILQT     +  E 
Sbjct: 1  MAAIKSLISISL-LALLFFSESLSTSAANCRG--ASNSVTAMLRRNILQTATHEIADSEG 60

Query: 61 KINVHIKK-------RIRSGRVGGPHKSAANRSRLASFGVG 92
          K+NV IKK        I +G   G   SAANRSR+ SFG+G
Sbjct: 61 KMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLG 98

BLAST of Tan0007863 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQT--------TVE 60
          MAAI+ LVSI++ +ALL FSESL T         S+SLTG  HRNIL T        +VE
Sbjct: 1  MAAIRPLVSIAL-LALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVE 60

Query: 61 SSVERKIN-VHIKKRIR------SGRVGGPHKSAANRSRLASFGVGSV 94
          SS +RK N +H K R R      SG  G  HKSA NRSR+ASF VGS+
Sbjct: 61 SSYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSM 98

BLAST of Tan0007863 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 1  MAAIKSLVSISIVVALLLFSESLATSAAVRGSASSNSLTGKLHRNILQT--------TVE 60
          MAAI+ LVSI++ +ALL FSESL T         S+SLTG  HRNIL T        +VE
Sbjct: 1  MAAIRPLVSIAL-LALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVE 60

Query: 61 SSVERKIN-VHIKKRIR------SGRVGGPHKSAANRSRLASF 89
          SS +RK N +H K R R      SG  G  HKSA NRSR+ASF
Sbjct: 61 SSYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASF 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6575859.19.2e-1461.39hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593163.16.2e-1058.76hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0068047.13.4e-0855.88protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
KGN44886.11.3e-0755.45hypothetical protein Csa_015765 [Cucumis sativus][more]
KAG7025561.12.2e-0757.78E3 ubiquitin-protein ligase MIEL1, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5A7VLE51.6e-0855.88Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KAQ76.2e-0855.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1[more]
A0A5D3D3Y61.5e-0651.85E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3BT532.9e-0551.46E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007863.1Tan0007863.1mRNA