Tan0007647 (gene) Snake gourd v1

Overview


Name	Tan0007647
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG11: 39281646 .. 39282256 (-)
RNA-Seq Expression	Tan0007647
Synteny	Tan0007647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTTAATAATCGCTTTACTAGCTTCCGACAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATTAACACGATTCAAGTAACTAACGACCTGAAGTTCGTGCCTACTGAGGAGTATCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAAGGCCAATGAAAATGGCAAGGTCTATATAATTGCCAGCTTATCTGAAGTCTTAGCAAAGAAGCATGAGTCGATGGTCACCGGAAAGGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAAGTCAGGCACGATTCACTCAAACACGTCTTCAACGCCCGGATGAAAGAAGGGTCGTCTGTCCGTGAACATGTTCTAAACATGATGACCCACTTTAATCTTGCGGAGATGAACGAGGCTTCGATCGACGAGTCGAGCCAGGTCAGCTTTATTCTGGAGACTCTTTCGAAGAGTTTCCTTCAGTTTCTTAGCAACGGTGTTATGAACAAGATAAACTACACTCTTACCACCATTCTCAACGAGCTACAGAACTTTCAGTCCTTGATGAGGATCAGGGCATCGAAATTTGA

mRNA sequence

ATGTCTAGCTTAATAATCGCTTTACTAGCTTCCGACAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATTAACACGATTCAAGTAACTAACGACCTGAAGTTCGTGCCTACTGAGGAGTATCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAAGGCCAATGAAAATGGCAAGGTCTATATAATTGCCAGCTTATCTGAAGTCTTAGCAAAGAAGCATGAGTCGATGGTCACCGGAAAGGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAAGTCAGGCACGATTCACTCAAACACGTCTTCAACGCCCGGATGAAAGAAGGGTCGTCTGTCCGTGAACATGTTCTAAACATGATGACCCACTTTAATCTTGCGGAGATGAACGAGGCTTCGATCGACGAGTCGAGCCAGCAACGGTGTTATGAACAAGATAAACTACACTCTTACCACCATTCTCAACGAGCTACAGAACTTTCAGTCCTTGATGAGGATCAGGGCATCGAAATTTGA

Coding sequence (CDS)

ATGTCTAGCTTAATAATCGCTTTACTAGCTTCCGACAAATTAGTGGGAGATAACTTCCAAACATGGAAGAATAATATTAACACGATTCAAGTAACTAACGACCTGAAGTTCGTGCCTACTGAGGAGTATCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCTTACGATCGATGGATCAAGGCCAATGAAAATGGCAAGGTCTATATAATTGCCAGCTTATCTGAAGTCTTAGCAAAGAAGCATGAGTCGATGGTCACCGGAAAGGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAAGTCAGGCACGATTCACTCAAACACGTCTTCAACGCCCGGATGAAAGAAGGGTCGTCTGTCCGTGAACATGTTCTAAACATGATGACCCACTTTAATCTTGCGGAGATGAACGAGGCTTCGATCGACGAGTCGAGCCAGCAACGGTGTTATGAACAAGATAAACTACACTCTTACCACCATTCTCAACGAGCTACAGAACTTTCAGTCCTTGATGAGGATCAGGGCATCGAAATTTGA

Protein sequence

MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYDRWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQQRCYEQDKLHSYHHSQRATELSVLDEDQGIEI

Homology

[Close]

BLAST of Tan0007647 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.8e-50
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.8e-50
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.8e-50
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.8e-50
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

[Close]

BLAST of Tan0007647 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.8e-50
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 1   MSSLIIALLASDKLVGDNFQTWKNNINTIQVTNDLKFVPTEEYPQLSSSTASRSVRDAYD 60
           M+S  + +LA+DKL G+N+ +WKN INT+ + +DL+FV  EE PQ+ ++ A+R+VR+ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWIKANENGKVYIIASLSEVLAKKHESMVTGKEIMDSLQDMFGQQSFQVRHDSLKHVFNA 120
           RW KANE  + YI+ASLSEVLAKKHESM+T +EIMDSLQ+MFGQ S+Q++HD+LK+++NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGSSVREHVLNMMTHFNLAEMNEASIDESSQ 155
           RM EG+SVREHVLNMM HFN+AEMN A IDE+SQ
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

The following BLAST results are available for this feature:

BLAST of Tan0007647 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007647 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	1.2e-49	62.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.2e-49	62.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.2e-49	62.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	1.2e-49	62.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	1.2e-49	62.99	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of Tan0007647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	5.8e-50	62.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	5.8e-50	62.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	5.8e-50	62.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	5.8e-50	62.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	5.8e-50	62.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

BLAST of Tan0007647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..151 e-value: 7.6E-7 score: 29.0
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 21..163
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 21..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007647.1	Tan0007647.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding