Tan0007124 (gene) Snake gourd v1

Overview
NameTan0007124
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 63128835 .. 63129194 (+)
RNA-Seq ExpressionTan0007124
SyntenyTan0007124
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACTTGTTCAAACACCAAAGCTCTAATGGCGGTCCTCATTTTGATGCTCAGTGGAAGCAATTGCAAGGTTGCTTCTCTAAGTCCTTCAAATTTCGGCAACAACACTGTCGCTGCTGGGGCATCGATGTGGTGTGATGGTCGTACCGAAGAGTGCCTCGCCGGAGAAGGCCACGGTGAGTCGGCATTTCCAGGCCTGCTAACTTTTACACTCCCGAATAGTCCTCGGACCGGAAACCGGAATAAACCTATATGTGATCGGCCGTAAGAAAGATATCGTTGTCTCGACGGAGAACGCGAAATTCCCAAGCCCGAAACTTGTGGGAGCACATTTAAGCGCAACTGTCCACCAAAGTAA

mRNA sequence

ATGGGAACTTGTTCAAACACCAAAGCTCTAATGGCGGTCCTCATTTTGATGCTCAGTGGAAGCAATTGCAAGGTTGCTTCTCTAAGTCCTTCAAATTTCGGCAACAACACTGTCGCTGCTGGGGCATCGATGTGGTGTGATGGTCGTACCGAAGAGTGCCTCGCCGGAGAAGGCCACGGTGAGTCGGCATTTCCAGGCCTGCTAACTTTTACACTCCCGAATAAAAGATATCGTTGTCTCGACGGAGAACGCGAAATTCCCAAGCCCGAAACTTGTGGGAGCACATTTAAGCGCAACTGTCCACCAAAGTAA

Coding sequence (CDS)

ATGGGAACTTGTTCAAACACCAAAGCTCTAATGGCGGTCCTCATTTTGATGCTCAGTGGAAGCAATTGCAAGGTTGCTTCTCTAAGTCCTTCAAATTTCGGCAACAACACTGTCGCTGCTGGGGCATCGATGTGGTGTGATGGTCGTACCGAAGAGTGCCTCGCCGGAGAAGGCCACGGTGAGTCGGCATTTCCAGGCCTGCTAACTTTTACACTCCCGAATAAAAGATATCGTTGTCTCGACGGAGAACGCGAAATTCCCAAGCCCGAAACTTGTGGGAGCACATTTAAGCGCAACTGTCCACCAAAGTAA

Protein sequence

MGTCSNTKALMAVLILMLSGSNCKVASLSPSNFGNNTVAAGASMWCDGRTEECLAGEGHGESAFPGLLTFTLPNKRYRCLDGEREIPKPETCGSTFKRNCPPK
Homology
BLAST of Tan0007124 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 53/115 (46.09%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 1   MGTCSNTKALMA-----VLILMLSGSNCKVASLSPSNFGNNTVAAGASMWCDGRTEECLA 60
           MG  SN+  +MA     V IL+LSGS+C VAS +PS++GNNTVAA ASMWCDGR EEC+ 
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

Query: 61  GEGHGESAFPGLLTFT-----------------LPNKRYRCLDGEREIPKPETCG 94
            EG   SAFP L T T                  P++   C +  R  P P  CG
Sbjct: 61  REGDSASAFPSLQTSTRKYISPSSVNSNKAVCERPDEYRSCFNPRRSNPNPNNCG 115

BLAST of Tan0007124 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-15
Identity = 57/125 (45.60%), Postives = 67/125 (53.60%), Query Frame = 0

Query: 1   MGTCSNTKALMA--------VLILMLSGSNCKVASLSPSNFGNNTVAAGASMWCDGRTEE 60
           MG  SN+ A+MA        V ILMLSGS+C VAS +PS++GN TVAA ASMWCDGR EE
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEE 60

Query: 61  CLAGEGHGESAFPGLLTFT-----------------LPNKRYRCLDGEREIPKPETCGST 101
           C+  E  GESAFP LL  T                  P     C +  R   K + CG T
Sbjct: 61  CVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGDYKSCFNARRTNTKNDNCG-T 120

BLAST of Tan0007124 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1  MGTCSNTKALMAVLILMLSGSNCKVASLSPSNFGNNTVAAGASMWCDGRTEECLAGE 58
          M   +   A+ A+++L L+ SN   ASLS SNFGN T A   S WCD RTEECL G+
Sbjct: 1  MAAAAMMAAVAAIVVLTLAASNGNAASLSRSNFGNETDAGAPSTWCDRRTEECLVGD 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6607071.11.1e-1546.09hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607070.12.4e-1545.60hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.15.0e-0550.88Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007124.1Tan0007124.1mRNA