Tan0007079 (gene) Snake gourd v1

Overview


Name	Tan0007079
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA/RNA polymerases superfamily protein
Location	LG02: 52459300 .. 52464960 (+)
RNA-Seq Expression	Tan0007079
Synteny	Tan0007079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTAAGAGACCCTATCCATTTCTGGAGTTTGAGTTGTTCTGAATTCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGCGCATTATGGGAATCTCACGGTCCAACCTAATGAAGGAGACCGTAGGATGTGTTGACACACTTCCTTCGCTCACTTACTATAAATACTTTCTCCATTCACCTTGCTCTTGATTTATGCAAACAGCATCCGAATGGGGATGCCCTATTGACATCACAAGGCCGAGCATAAATCTCACGGTGTGAACTTCGTGGAGAGCGTAAGAGGAAATTGATATATCATATATACCTTTTCACTCCCACTAAGTATTTTAAACTGTTTGGGTATACTTTTACTTAGGCATATTTCGGCTAAAACAATAAGACCTAAGTCTACCAATATAACAATTATACTGGAATTACCTAAGTCTATTAACCTTTTAATAAACCTAGGTCTATGAGTTTAATTTATTAACTTTTAATAAACGCCACTCATGAAAGATAATTTATAAACCTATAGATTAAATTCACTCCTAGGTCGGTTCTGAGGTGTAGGGGTGTTCATTTAAAATCCACAACCTTAAGTAGTACCAACCTAGCAGAACCTTCCTTAGTCAGAGTCCTTCTTTAATCAAAGTTTATAAATTATTGGTTTCCTAATTCTAATCTTATTAGAACTAGATAACCTAAGGTCTAATTAATTCCAGTTCTAAAATCATTTTAAAACTAATTAATTAACCTTAGGTTACATGCATTTCTATGTTATAAACAAATTGAACATTCATCACATGAATAAACATACATTTATAACAAATCCATCACATGAAAAATGCATAGCAATTATATGTTTAATTTTTAATTTATAACCCTTATATTAATTATAATTAAAACATATAATATTTGTTTCATAAATTAATATAACACTTATATTAATTCTTATGAAACCCAATAAACATGCATAAAATATATTATAACACTTATAACATACTTTCAATGCATGGAGCATGCTTCCTATGGTGGGATTGTAAAATCTATATGGCATACTTTATGCACATACAATCAGGGATTTTAATTAAAACATACATTCACAATGCATAATTAATTAAAGACACTAAAGTGGACTGGTTTTGGCATCTAATGCAAGCAAACTACTAAATTATTACAATAATAATCTAGAATTAAGATCGAGCCACTTCGAACTCTTCGAATTTGGGTCGAACCAGCTTGCAAATGTGTGAACCGGACCTTCAAAAGGTTGAACCGGGCTGAAAAAAGGCTGAACCGGGCCTCAAATTGGTGAAACGGACCTTTAAAATGAAAAAATTGGCCTCGAAATAGTCCGAATCGGTCTAAAAATACCTGAACCAGACCAAAATCGAGCCGAATCGGTCCAAAATTAATTGAACCGGTCAAAGTCAACCTAAAATAGTCAAAGTCAACAAACCAAGCCGCTGACGTCATCGTGACATCACCATCTTCTTCATTTTGAAAAGAAAAAGGCGGGCCGAAGGATGAAATTACTGTAGCTAATTGCAGAATGTGGAAAAAGTGCCTCTGTTCATTGATTTTATGACCTTTCATGCTTCTCTCTTAAAATTGAAGGTCTTCTCGAACTCCAATCGACTCGAAATTTTTACAGCTTATTCTACACACATTAATGCTCAAACACACTTGAGCAATTTGAAAATAAAGCACAAATTGATGCTCAATTTAAATGCCAAAACAAGAAGAACACTTTAGACGCCCAGAAAAATTGTATTTCAAAGAACACCCACCACAGAACAAAATAGATCAAATTGAGTGCTCAAAATTGCTCTGATACCAATTGAAAGAGTCTAGATTAAGAAAGCGGAAGCAATTTTGGATCTTGAACACTCTAAGTTGATCAATTTTGTAAAATAAAAAAACATGCTCAAAGCTGGAAAAACAGAGGGATAGAAAACTCAACTTTGAAGATCAAATTCTCTTCACCCGGTGGATGGTTTTCAACACGAATACTTCGTGGACAACCGTTAGAGTCTTTCCTACTATCCTCAGGCCTTAGAACGGATTGTGGGATCCTTGGTTGAGAGAATTTTGAAGAAATGACCTCAAAGGTCACTAATTCGGGAATATTGAATTTTCTGTGTAATTCTCACAAAACACCTCAAATCACCATTATATAAAGTTTCAAAAAGCTTCAATGGAGTGACAACTCAAGGGTGATGAGGATGCTATGAGATGGAGGTGGCCAATTTTGGTGAATTTTGAAGATGAGTAAGATTGGGCAAGTTGTCAAGTTGGGTTTCATGGAAATCCTTGAATTTTCATTTAATTTTAATTCAAAAATCAATATTAAATTGATTTTTAATTAAAATTAATTTAATTAATTAAATTATTAAATAATTATTTTAATTAATTAATTTTTTAATTTAATTTAATATCAAATATTAAATTAAATTAATTGCCCGATCTCGATCGTTTTTCCGAACATGAATCCTAATTCATGTTATAAACCGATCCGATATTTAAATCATATTTAAATATATCCACCTCTAATTAATCATAGTTTAATTCATAATTAAGCTATGATTCGTTAAATATATCACATATAATTAACACTTTCTTCCAAACTCGAATTTGAATAATTCAAATTCTTTTCTCTCAAAATGTTATAAGGCTAAGTCCGAGCTAGTAAGGAGGACCTAATGGACCTACAGATCATGAGCTCCAACGATACGAGATTAACTGGTCAAACTCTTTAACCTAGCTAATCAACATTCGCTAACCACCGGGACACTCCACTAAAGCCCAGTGGTTGCACTCTCCTCACTATAGATATATTTCTGTCCACTCGATATAACCATGATTAGTAAGTCGATCCTTCACAGGTCGTTCGTAATTACATCTGGGTCAAAATTACCGTTTTACCCCTGTAATTACCTCTTGTTCCTTAAGTACCATTGATCCTCTAATGAACAATTGGTTTGTGGTCCAACCAGCAAACCGAATCCCTCTCGAGCCAATGAGAGGGTGGACCCATTGTTCAAGACACGAGTCGAGACTTAAGGGAACAACCTCTCTACTTATCCCTAAAGCGCGTAGGAGTGAATTCCATCTTGCTGAACTATGTTCACAGCTATCTACCCGATTTTATCCCTGAAATGGGAGGCTTATTGAGTCGGCAATCTCGAGCCACTCTCACCCATGCAAATCTAAGGATAATCCGAATAAACAGGAGTCCATAGAACGCTTAGGATTAAGATCGAGTTACCTAGGTCATCGTATGAATATAGTCAGTTAAGACAGTAAACGAAGTTATAAAGTCTAAGTGACTATTTCGCGGTCCAGTCTTATGCAAACTCATTGCATAGGGCGCCCCCACTCACATGGTCTCCACATGAACGATTTAGGATCACATCGTTTGTACTCTACAAAGTGGGTCGCATCCATAGTGTCCCAAGGATAAGGTACCCAGCCCTATCCTTATACTATAGACTGTTCTGGCTATAACTTGAACTTGATCCACTTTTATGTCACACATAAAGTTCAAGTATTCATCCTATAGCCAAAGGTTCTTTATTGGATTATGGTTACACAATACACAATAGTCAATAACACCTTTACTGAAAAAAATTCAATAACAACTTTATTGTGAAATAGAATATATATTCAGTTTACAAAACCACGAGTTTTAGGACATAAAACCCAACAGTTTAAATGTTTTTATGTGTTTTTTCTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTCATTATCTGTTGTCGACGTTGAGTGTTCTCCGTGACAACAATGTTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAACGTTGGTTGTACTGGGCGTGCCCTACAATACGTGGATTGTGACATGTTTTAAAAGAATTTCTATCAATCATATGCCTTACGAGATTTTAACGATATACTTGCTGGTTTTTCTGAAAAGCTATTATGATTACACAGTTACTTTTAACGTTTGATTACAGATTACATATGCTCATAGATGGTCAGGTGATATCATTTACGAGTTAATAGTTTTCTTTTAACTCAAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAGTGTTTTTCCACTTTGCAGGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATAGTCTACTAGAAGCTCAACGAGCTTGATATTTTGTACGTGAGTGGTGTTGTGTAGAAAGTCTATATGTGTTGTAGTAAATGTTTGAGGGGACTATGTAGTTATAGTTGTATGTGCTTTAGGGGTTGTGGTTGTGTTATTAATGGTTTGGCTTATTGTGGTTTTGATGTTTTTGCCCGATTAGTTTTCAAGAGACTTAAGAAGTGTTTCTCCTTATGTATGCTTAGTAGTTGTCAAGTTCCGCTGTGTTATGCTAAAGTGTTCTATAAGCGAACATAGTATGTTTATCAGGAAAAATAGGGTCTACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTTCTGGGTTAAGTAATGAGTAGTTCGGGAGAGGGTGTGACAACTTGGTATCAGAGCAGTTAGCTCCATGGGAATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAGTAAATAGCAAGTTATTGAGTTAGTTTAATAGAACTAGCATACCATGATCCAAGTAAGGATAATTGTAAGTCCAGTCAGGACTAGAATGTAAATACAAGTCTAGAATTGTGCATTTGAGAGTATTCATTACATGTCTAGTATGTTGATATGTTATAGAAGTCGTGCCACCATGTACAAGCAGACGATGCAGGCAGGATCAGGACGGGACGCAGGATCCTACCCAAGATCAATCTCAGTGGGGATCTAGTGCCCCGAGAGTCCAGATAGGGGCCAGAATTAAACGACATGCTAATTCCTCACAGGATGTAGGTAAGCCATAGAGAGCAGAGTTAAGTGATCCAGACAAGACATATAAAATAGATCACCTAAAAGAATTAGGTGCCACAGTGTTTGAGGGTACCAAAGATCCAGCTAATGCTGAGGTTGGTTGAATAAGCTTATAAATGTTTTGATGTGATGAGTTGCTCTGAGGAGCGAAATGTTAAGTTGGCCACATTCTTGCTGCTGAAGAAGACAGAAGGATGATGAAAATCGATGTTAGCCAGTTGTAGTGATGCACGTACTTTAGACTGGCAAACTTTCAGAAGTATATTTGAAGATAAATATTATCCTAGCATGTACCGAGAGGCAAAGGGGGATGAATTTTTAGAACTGAAGCAAGGGACACTTTCAGTGGTTGAATACGAGAGAAAGTATACTGAGTTGTCGCGGTATGCTGAAGTAATTGTGGCATCTGAGAGTGACAGGTGTCGAAGGTTTGAAAGAGGATTACATTCTGAGATACGTACCCAGTCACAACTATTTCTAAGTGGGCCGACCTTTTCTCGGCTAGTAGAGACTGCCCTACATGTTGAGCAGACTATAGTAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGGGCTTCGACAACCAGCAGTTTCCAAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTAAATGTTTCCAAGTCAATAAGACTTTAA

mRNA sequence

ATGGACCTAAGAGACCCTATCCATTTCTGGAGTTTGAGTTGTTCTGAATTCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGCGCATTATGGGAATCTCACGGACGGGACGCAGGATCCTACCCAAGATCAATCTCAGTGGGGATCTAGTGCCCCGAGAGTCCAGATAGGGGCCAGAATTAAACGACATGCTAATTCCTCACAGGATACTATAGTAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGGGCTTCGACAACCAGCAGTTTCCAAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTAAATGTTTCCAAGTCAATAAGACTTTAA

Coding sequence (CDS)

ATGGACCTAAGAGACCCTATCCATTTCTGGAGTTTGAGTTGTTCTGAATTCCATGTTACATCCCTCCGAATGGATGGTGCTACTTCGGGCAACCTGCAGGCGCATTATGGGAATCTCACGGACGGGACGCAGGATCCTACCCAAGATCAATCTCAGTGGGGATCTAGTGCCCCGAGAGTCCAGATAGGGGCCAGAATTAAACGACATGCTAATTCCTCACAGGATACTATAGTAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGGGCTTCGACAACCAGCAGTTTCCAAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTAAATGTTTCCAAGTCAATAAGACTTTAA

Protein sequence

MDLRDPIHFWSLSCSEFHVTSLRMDGATSGNLQAHYGNLTDGTQDPTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVSKSIRL

Homology

[Close]

BLAST of Tan0007079 vs. NCBI nr
Match: TYK00849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 77  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS 112
           I EEKS V+ SCG ST+S F+GREQRRFTPG+N+S
Sbjct: 165 ITEEKSAVELSCGTSTSSGFRGREQRRFTPGINIS 199

[Close]

BLAST of Tan0007079 vs. NCBI nr
Match: KAA0054814.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 46  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFT 105
           P    ++W + +  V+   R+       + +I EEKS V+ S G STTS F+GREQRRFT
Sbjct: 211 PVTAIAKWTNFSQLVETALRV-------EQSITEEKSAVELSRGTSTTSGFRGREQRRFT 269

Query: 106 PGVNVS 112
           PG+N+S
Sbjct: 271 PGINIS 269

[Close]

BLAST of Tan0007079 vs. NCBI nr
Match: KAA0061627.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 46  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFT 105
           P    ++W + +  V+   R+       Q +I EEKS V+ S G ST S F+GREQRRFT
Sbjct: 196 PVTAVAKWTNFSQLVETSLRV-------QQSITEEKSAVELSRGTSTASGFRGREQRRFT 254

Query: 106 PGVNVS 112
           PGVN+S
Sbjct: 256 PGVNIS 254

[Close]

BLAST of Tan0007079 vs. ExPASy TrEMBL
Match: A0A5D3BRY3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00100 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 77  IVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS 112
           I EEKS V+ SCG ST+S F+GREQRRFTPG+N+S
Sbjct: 165 ITEEKSAVELSCGTSTSSGFRGREQRRFTPGINIS 199

[Close]

BLAST of Tan0007079 vs. ExPASy TrEMBL
Match: A0A5A7UI35 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001040 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 46  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFT 105
           P    ++W + +  V+   R+       + +I EEKS V+ S G STTS F+GREQRRFT
Sbjct: 211 PVTAIAKWTNFSQLVETALRV-------EQSITEEKSAVELSRGTSTTSGFRGREQRRFT 269

Query: 106 PGVNVS 112
           PG+N+S
Sbjct: 271 PGINIS 269

[Close]

BLAST of Tan0007079 vs. ExPASy TrEMBL
Match: A0A5A7V411 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3980G00110 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 46  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFT 105
           P    ++W + +  V+   R+       Q +I EEKS V+ S G ST S F+GREQRRFT
Sbjct: 196 PVTAVAKWTNFSQLVETSLRV-------QQSITEEKSAVELSRGTSTASGFRGREQRRFT 254

Query: 106 PGVNVS 112
           PGVN+S
Sbjct: 256 PGVNIS 254

[Close]

BLAST of Tan0007079 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 64  ARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFTPGVNVS 112
           A++   A   + +I+EEKS +  S G STTS F+GREQRRFTPGVNVS
Sbjct: 358 AKLVETALPVEQSIIEEKSTMDLSRGVSTTSGFRGREQRRFTPGVNVS 405

[Close]

BLAST of Tan0007079 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 46  PTQDQSQWGSSAPRVQIGARIKRHANSSQDTIVEEKSVVKPSCGASTTSSFQGREQRRFT 105
           P    ++W + +  V+   R+K+       +IVEEKS ++ S G STTS  +GREQRRFT
Sbjct: 423 PVTAIAKWMNFSQLVETALRVKQ-------SIVEEKSAMELSRGVSTTSGIRGREQRRFT 481

Query: 106 PGVNVS 112
           PGVNVS
Sbjct: 483 PGVNVS 481

The following BLAST results are available for this feature:

BLAST of Tan0007079 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007079 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00849.1	2.8e-04	71.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0054814.1	8.1e-04	43.94	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0061627.1	8.1e-04	45.45	putative polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0007079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRY3	1.4e-04	71.43	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UI35	3.9e-04	43.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7V411	3.9e-04	45.45	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold398...	[more]
A0A5A7UT17	5.1e-04	58.33	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3BTP3	5.1e-04	46.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of Tan0007079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007079.1	Tan0007079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding