Tan0006681 (gene) Snake gourd v1

Overview
NameTan0006681
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 3529229 .. 3529777 (+)
RNA-Seq ExpressionTan0006681
SyntenyTan0006681
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCAAACAAGAACTCAATGTTTCGAAAGGTTTTATTTGTTGTCATGCTCATTCTTACTTCTTCCCATATGGCGTTTGGAAGACATTTTGCTGATACTACTATTCATAGATCTCGTAAGAATCACTTTTTTTCATTCCACAAAATGAATATCTTTAATTCACTCAACTTTAAGGCTTATTTCTCTTTCCAATTTTGATGTTTTTCATGCACGTTACATCATGTTTGCTAATTTTGTTAAAAAATATTGTGATATGGTCTAAACAAAGGCCATGATATACGACTTTTTAAAATAACTTTTGCAAAATTTTGTAGTTGCAAGAATAAATTTCTTCTACTTTTGTTTGTGGGGTATTTTTTTTTTCCCTTAAAAGGCATTTTACATAAATTTCAGTATTATTTGTACTTGATCTCATACTTCTATTTAATTGCAGATCATAACAACCATAGGCATAAGTTGAATATTTCAAGAGTTCTATTGGCTTCTCAAGCTGATGTCCCAAGAAGGGGTAATTATGGAGGTGGAGGAGGGGAACCGACAAGTTAA

mRNA sequence

ATGACTTCAAACAAGAACTCAATGTTTCGAAAGGTTTTATTTGTTGTCATGCTCATTCTTACTTCTTCCCATATGGCGTTTGGAAGACATTTTGCTGATACTACTATTCATAGATCTCATCATAACAACCATAGGCATAAGTTGAATATTTCAAGAGTTCTATTGGCTTCTCAAGCTGATGTCCCAAGAAGGGGTAATTATGGAGGTGGAGGAGGGGAACCGACAAGTTAA

Coding sequence (CDS)

ATGACTTCAAACAAGAACTCAATGTTTCGAAAGGTTTTATTTGTTGTCATGCTCATTCTTACTTCTTCCCATATGGCGTTTGGAAGACATTTTGCTGATACTACTATTCATAGATCTCATCATAACAACCATAGGCATAAGTTGAATATTTCAAGAGTTCTATTGGCTTCTCAAGCTGATGTCCCAAGAAGGGGTAATTATGGAGGTGGAGGAGGGGAACCGACAAGTTAA

Protein sequence

MTSNKNSMFRKVLFVVMLILTSSHMAFGRHFADTTIHRSHHNNHRHKLNISRVLLASQADVPRRGNYGGGGGEPTS
Homology
BLAST of Tan0006681 vs. NCBI nr
Match: KAG6576807.1 (hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 5.7e-14
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 1  MTSNKNSMFRKVLFVVMLILTSSHMAFGRHFADTTIHRSHHNNHRHKLNISRVLLASQAD 60
          M SN  SM  KVLF +MLIL SSHMAFGRH AD T  RS++ N  +K +ISR LL SQ D
Sbjct: 1  MASNNKSMLWKVLFAIMLILCSSHMAFGRHIADATPRRSYNEN--NKESISRALLGSQTD 60

Query: 61 VPRRGNYGGGGGEPTS 77
          VPRRGNY  GGGEP+S
Sbjct: 61 VPRRGNY--GGGEPSS 72

BLAST of Tan0006681 vs. NCBI nr
Match: KAE8649130.1 (hypothetical protein Csa_014869 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MTSNKNSMFRKVLFVVMLILTSS-HMAFGR-HFADTTIH-RSHHNNHRHK-LNISRVLLA 60
           M SNK+SM  K LFVV+LI+TSS ++AFGR H +D   H RS H + R K   ISRV   
Sbjct: 22  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 81

Query: 61  SQADVPRRGNYGGGGGEPTS 77
           SQ D PR+GNYGG G  PTS
Sbjct: 82  SQTDTPRKGNYGGRGEGPTS 101

BLAST of Tan0006681 vs. ExPASy TrEMBL
Match: A0A0A0KUB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MTSNKNSMFRKVLFVVMLILTSS-HMAFGR-HFADTTIH-RSHHNNHRHK-LNISRVLLA 60
          M SNK+SM  K LFVV+LI+TSS ++AFGR H +D   H RS H + R K   ISRV   
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQADVPRRGNYGGGGGEPTS 77
          SQ D PR+GNYGG G  PTS
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576807.15.7e-1465.79hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649130.17.9e-0857.50hypothetical protein Csa_014869 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KUB23.8e-0857.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006681.1Tan0006681.1mRNA