Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCACTATTTGGATAAGAGCCATATCCAAGTCCACAAATATCATTATAAACCCTTCAATCAATATCACATTATGCAAATCCACAAAACAAACCAACAACAACTTGAATAAAATCACCTCTCTAAACCTTGTAACTAGGGTTTGTCTTTGCACACCAATCTCTTCTTTCAATGAGATTTTCCAAGCTGAAATCCCACCTAGAAAAAGCCATACTCATACTCATCCAAGGCCAAAGCCACCCCTCTCCACGACTCCGAGGCTCAACGTCGATCGCCCCAAAAGGGTTTTTCGAGGAAAATTGTTAACCGACGATGTCTCGATGAGAAAATTCGTCGTCGAAGAAGAGACAATGATGCATGTGAGGAAAAGAAACCAAATGGAGGTCATAAAGAGAAGGAGAAGTGTAATGAGAAGAGAGAAGCTTGGGCCAAGTCCTCTTAGTTAA
mRNA sequence
ATGGGCACTATTTGGATAAGAGCCATATCCAAGTCCACAAATATCATTATAAACCCTTCAATCAATATCACATTATGCAAATCCACAAAACAAACCAACAACAACTTGAATAAAATCACCTCTCTAAACCTTGTAACTAGGGTTTGTCTTTGCACACCAATCTCTTCTTTCAATGAGATTTTCCAAGCTGAAATCCCACCTAGAAAAAGCCATACTCATACTCATCCAAGGCCAAAGCCACCCCTCTCCACGACTCCGAGGCTCAACGTCGATCGCCCCAAAAGGGTTTTTCGAGGAAAATTGTTAACCGACGATGTCTCGATGAGAAAATTCGTCGTCGAAGAAGAGACAATGATGCATGTGAGGAAAAGAAACCAAATGGAGGTCATAAAGAGAAGGAGAAGTGTAATGAGAAGAGAGAAGCTTGGGCCAAGTCCTCTTAGTTAA
Coding sequence (CDS)
ATGGGCACTATTTGGATAAGAGCCATATCCAAGTCCACAAATATCATTATAAACCCTTCAATCAATATCACATTATGCAAATCCACAAAACAAACCAACAACAACTTGAATAAAATCACCTCTCTAAACCTTGTAACTAGGGTTTGTCTTTGCACACCAATCTCTTCTTTCAATGAGATTTTCCAAGCTGAAATCCCACCTAGAAAAAGCCATACTCATACTCATCCAAGGCCAAAGCCACCCCTCTCCACGACTCCGAGGCTCAACGTCGATCGCCCCAAAAGGGTTTTTCGAGGAAAATTGTTAACCGACGATGTCTCGATGAGAAAATTCGTCGTCGAAGAAGAGACAATGATGCATGTGAGGAAAAGAAACCAAATGGAGGTCATAAAGAGAAGGAGAAGTGTAATGAGAAGAGAGAAGCTTGGGCCAAGTCCTCTTAGTTAA
Protein sequence
MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLVTRVCLCTPISSFNEIFQAEIPPRKSHTHTHPRPKPPLSTTPRLNVDRPKRVFRGKLLTDDVSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS
Homology
BLAST of Tan0006603 vs. NCBI nr
Match:
XP_023515076.1 (uncharacterized protein LOC111779211 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 86/156 (55.13%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLV---TRVCLCTPISSF 60
+GT W SKS + PS N L + +N + K TSL + TRVCLC PISS+
Sbjct: 21 VGTQWRTTSSKSRDQYPIPSPNGALNSNNNNKHNKMRKCTSLKIATSFTRVCLCAPISSY 80
Query: 61 NEIF-QAEIPPRKSHTHTHPRPKPPLST----TPRLNVDRPKRVFRGKLLTDDVSMRKFV 120
NEIF QA+IPPR+SH++ +P P S TPRL+ + +RVFRGK LTDDV MR+FV
Sbjct: 81 NEIFQQADIPPRRSHSYPRSKPFPTTSNIVLPTPRLSGENSRRVFRGKSLTDDVLMRRFV 140
Query: 121 VEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
VEEE MM VR+RNQM+VI R+R++MRR+KLGPSPLS
Sbjct: 141 VEEEAMMQVRRRNQMDVI-RKRNLMRRKKLGPSPLS 175
BLAST of Tan0006603 vs. NCBI nr
Match:
XP_023004121.1 (uncharacterized protein LOC111497548 [Cucurbita maxima])
HSP 1 Score: 138.7 bits (348), Expect = 4.2e-29
Identity = 85/158 (53.80%), Postives = 109/158 (68.99%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLV---TRVCLCTPISSF 60
+GT W SKS + PS N ++ +N + K TSL + TRVCLC PISS+
Sbjct: 21 VGTQWRTTSSKSRDQYPIPSPNGAFNSNSNNKHNKMRKCTSLKIATSFTRVCLCAPISSY 80
Query: 61 NEIF-QAEIPPRKSHTHTHPRPKPPLST------TPRLNVDRPKRVFRGKLLTDDVSMRK 120
NEIF QA+IPPR+SH++ +P P +T TP+L+ + +RVFRGK LTDDV MR+
Sbjct: 81 NEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPQLSGENSRRVFRGKSLTDDVLMRR 140
Query: 121 FVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
FVVEEE MM VR+RNQMEVI R+R++MRR+KLGPSPLS
Sbjct: 141 FVVEEEAMMQVRRRNQMEVI-RKRNLMRRKKLGPSPLS 177
BLAST of Tan0006603 vs. NCBI nr
Match:
GAV66533.1 (hypothetical protein CFOL_v3_10043 [Cephalotus follicularis])
HSP 1 Score: 136.0 bits (341), Expect = 2.7e-28
Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 0
Query: 2 GTIWIRAISKSTNIIINPSINITL------CKS-----TKQTNNNLNKITSL---NLVTR 61
GT+ +ISKST P+ N TL CK+ K + L K TSL N TR
Sbjct: 39 GTLCKSSISKSTK--TTPTTNATLWRSGLSCKNPEIPVPKYSKGKLRKCTSLRVANSFTR 98
Query: 62 VCLCTPISSFNEIFQAEIPPRKSHTHTHPRPKPP-----LSTTPRLNVDRPKRVFRGKLL 121
VCLC PISS+NE+F+A++PPR+S+T+ + PP +++T RL+V+ +RVFRGK L
Sbjct: 99 VCLCAPISSYNEVFRADVPPRRSNTYPRSKSFPPETPERITSTTRLSVE-GRRVFRGKSL 158
Query: 122 TDDVSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
TDDV MR+FVVEEE MM VR+RNQMEVI RRRS+MRR KLGPSPLS
Sbjct: 159 TDDVLMRRFVVEEEAMMQVRRRNQMEVI-RRRSLMRRNKLGPSPLS 200
BLAST of Tan0006603 vs. NCBI nr
Match:
XP_022960213.1 (uncharacterized protein LOC111461019 [Cucurbita moschata])
HSP 1 Score: 135.6 bits (340), Expect = 3.5e-28
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLV---TRVCLCTPISSF 60
+GT W SK + PS N NN + K TSL + TRVCLC PISS+
Sbjct: 21 VGTQWRTTSSKPRDQYPIPSPNGAF---NSNNNNKMRKCTSLKIATSFTRVCLCAPISSY 80
Query: 61 NEIF-QAEIPPRKSHTHTHPRPKPPLST------TPRLNVDRPKRVFRGKLLTDDVSMRK 120
NEIF QA+IPPR+SH++ +P P +T TPRL+ + +RVFRGK LTDDV MR+
Sbjct: 81 NEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVFRGKSLTDDVLMRR 140
Query: 121 FVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
FVVEEE MM VR+RNQMEVI R+R++MRR+KLGPSPLS
Sbjct: 141 FVVEEEAMMQVRRRNQMEVI-RKRNLMRRKKLGPSPLS 174
BLAST of Tan0006603 vs. NCBI nr
Match:
XP_019420544.1 (PREDICTED: uncharacterized protein LOC109330718 [Lupinus angustifolius])
HSP 1 Score: 135.2 bits (339), Expect = 4.6e-28
Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIII-NPSINITLCKS----TKQTN-NNLNKITSLNLV---TRVCLC 60
M T+W +++SK TNI N +I T+ KS T+ +N N L K TSL + TRVCLC
Sbjct: 40 MATLW-KSMSKLTNIATSNSTIWKTMPKSPQVPTQNSNKNKLRKSTSLKVATSFTRVCLC 99
Query: 61 TPISSFNEIFQAEIPPRKSHTHTHPRPKPPL-STTPRLNVDRP--------KRVFRGKLL 120
PI S+N++F+AE+PPR+S +T+PR KPPL +TT V P ++VFRGK L
Sbjct: 100 APIYSYNDVFKAEVPPRRS--NTYPRSKPPLQATTTHERVHVPSARISTEGRKVFRGKSL 159
Query: 121 TDDVSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
TDDV MR+FV+EEE MM VR+RNQMEVI RRRS+MRR+KLGPSPLS
Sbjct: 160 TDDVLMRRFVIEEEAMMQVRRRNQMEVI-RRRSIMRRKKLGPSPLS 201
BLAST of Tan0006603 vs. ExPASy TrEMBL
Match:
A0A6J1KR77 (uncharacterized protein LOC111497548 OS=Cucurbita maxima OX=3661 GN=LOC111497548 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 85/158 (53.80%), Postives = 109/158 (68.99%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLV---TRVCLCTPISSF 60
+GT W SKS + PS N ++ +N + K TSL + TRVCLC PISS+
Sbjct: 21 VGTQWRTTSSKSRDQYPIPSPNGAFNSNSNNKHNKMRKCTSLKIATSFTRVCLCAPISSY 80
Query: 61 NEIF-QAEIPPRKSHTHTHPRPKPPLST------TPRLNVDRPKRVFRGKLLTDDVSMRK 120
NEIF QA+IPPR+SH++ +P P +T TP+L+ + +RVFRGK LTDDV MR+
Sbjct: 81 NEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPQLSGENSRRVFRGKSLTDDVLMRR 140
Query: 121 FVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
FVVEEE MM VR+RNQMEVI R+R++MRR+KLGPSPLS
Sbjct: 141 FVVEEEAMMQVRRRNQMEVI-RKRNLMRRKKLGPSPLS 177
BLAST of Tan0006603 vs. ExPASy TrEMBL
Match:
A0A1Q3BFH0 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10043 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 0
Query: 2 GTIWIRAISKSTNIIINPSINITL------CKS-----TKQTNNNLNKITSL---NLVTR 61
GT+ +ISKST P+ N TL CK+ K + L K TSL N TR
Sbjct: 39 GTLCKSSISKSTK--TTPTTNATLWRSGLSCKNPEIPVPKYSKGKLRKCTSLRVANSFTR 98
Query: 62 VCLCTPISSFNEIFQAEIPPRKSHTHTHPRPKPP-----LSTTPRLNVDRPKRVFRGKLL 121
VCLC PISS+NE+F+A++PPR+S+T+ + PP +++T RL+V+ +RVFRGK L
Sbjct: 99 VCLCAPISSYNEVFRADVPPRRSNTYPRSKSFPPETPERITSTTRLSVE-GRRVFRGKSL 158
Query: 122 TDDVSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
TDDV MR+FVVEEE MM VR+RNQMEVI RRRS+MRR KLGPSPLS
Sbjct: 159 TDDVLMRRFVVEEEAMMQVRRRNQMEVI-RRRSLMRRNKLGPSPLS 200
BLAST of Tan0006603 vs. ExPASy TrEMBL
Match:
A0A6J1H871 (uncharacterized protein LOC111461019 OS=Cucurbita moschata OX=3662 GN=LOC111461019 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 86/158 (54.43%), Postives = 106/158 (67.09%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQTNNNLNKITSLNLV---TRVCLCTPISSF 60
+GT W SK + PS N NN + K TSL + TRVCLC PISS+
Sbjct: 21 VGTQWRTTSSKPRDQYPIPSPNGAF---NSNNNNKMRKCTSLKIATSFTRVCLCAPISSY 80
Query: 61 NEIF-QAEIPPRKSHTHTHPRPKPPLST------TPRLNVDRPKRVFRGKLLTDDVSMRK 120
NEIF QA+IPPR+SH++ +P P +T TPRL+ + +RVFRGK LTDDV MR+
Sbjct: 81 NEIFQQADIPPRRSHSYPRSKPFPTTTTNNIVLPTPRLSGENSRRVFRGKSLTDDVLMRR 140
Query: 121 FVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
FVVEEE MM VR+RNQMEVI R+R++MRR+KLGPSPLS
Sbjct: 141 FVVEEEAMMQVRRRNQMEVI-RKRNLMRRKKLGPSPLS 174
BLAST of Tan0006603 vs. ExPASy TrEMBL
Match:
A0A1J7GJ16 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_18294 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIII-NPSINITLCKS----TKQTN-NNLNKITSLNLV---TRVCLC 60
M T+W +++SK TNI N +I T+ KS T+ +N N L K TSL + TRVCLC
Sbjct: 3 MATLW-KSMSKLTNIATSNSTIWKTMPKSPQVPTQNSNKNKLRKSTSLKVATSFTRVCLC 62
Query: 61 TPISSFNEIFQAEIPPRKSHTHTHPRPKPPL-STTPRLNVDRP--------KRVFRGKLL 120
PI S+N++F+AE+PPR+S +T+PR KPPL +TT V P ++VFRGK L
Sbjct: 63 APIYSYNDVFKAEVPPRRS--NTYPRSKPPLQATTTHERVHVPSARISTEGRKVFRGKSL 122
Query: 121 TDDVSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
TDDV MR+FV+EEE MM VR+RNQMEVI RRRS+MRR+KLGPSPLS
Sbjct: 123 TDDVLMRRFVIEEEAMMQVRRRNQMEVI-RRRSIMRRKKLGPSPLS 164
BLAST of Tan0006603 vs. ExPASy TrEMBL
Match:
A0A6A1VRZ8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G000481 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 87/163 (53.37%), Postives = 112/163 (68.71%), Query Frame = 0
Query: 1 MGTIWIRAISKSTNIIINPSINITLCKSTKQT---------NNNLNKITSLNLV---TRV 60
M ++W R++SKST I P N T+ K+ +T N L K TSL + TRV
Sbjct: 1 MASVW-RSVSKSTEI---PKTNGTIWKTISKTTEIPTANPNRNKLRKCTSLKVATSFTRV 60
Query: 61 CLCTPISSFNEIFQAEIPPRKSHTHTHPRPKPPLS---TTPRLNVDRPKRVFRGKLLTDD 120
CLC PISS+NE+F+AE+PPR+S+++ +P P + RL+V+ +RVFRGK LTDD
Sbjct: 61 CLCAPISSYNEVFRAEVPPRRSNSYPRSKPFPTSQEKIPSARLSVE-GRRVFRGKSLTDD 120
Query: 121 VSMRKFVVEEETMMHVRKRNQMEVIKRRRSVMRREKLGPSPLS 149
V MR+FVVEEE MM VR+RNQMEVI RRRS+MRR+KLGPS LS
Sbjct: 121 VLMRRFVVEEEAMMQVRRRNQMEVI-RRRSIMRRKKLGPSRLS 157
BLAST of Tan0006603 vs. TAIR 10
Match:
AT3G59680.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 101.7 bits (252), Expect = 5.3e-22
Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = 0
Query: 18 NPSINITLCKSTKQTNNNLNKITSL----NLVTRVCLCTPISSFNEIFQAEIPPRKSHTH 77
NPS+N + + Q + L K +SL N TRVCLC PI ++++F+ +PPR+S ++
Sbjct: 50 NPSVN-SKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIGPYDDVFRIHVPPRRSSSY 109
Query: 78 THPRPKPPLS----TTPRLNVDRPKRVFRGKLLTDDVSMRKFVV-EEETMMHVRKRNQME 137
+P P + T R++VD +R+FRGK L ++ MR+FVV EEE +M RKR+QME
Sbjct: 110 PPSKPLPMETAVAVATARMSVDSGRRIFRGKSLRENALMRRFVVAEEEAIMENRKRDQME 169
Query: 138 VIKRRRSVMRREKLGPSPLS 149
++++R + R++KLGPSPLS
Sbjct: 170 IVRKRNQMRRKKKLGPSPLS 188
BLAST of Tan0006603 vs. TAIR 10
Match:
AT3G59680.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 101.7 bits (252), Expect = 5.3e-22
Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = 0
Query: 18 NPSINITLCKSTKQTNNNLNKITSL----NLVTRVCLCTPISSFNEIFQAEIPPRKSHTH 77
NPS+N + + Q + L K +SL N TRVCLC PI ++++F+ +PPR+S ++
Sbjct: 78 NPSVN-SKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIGPYDDVFRIHVPPRRSSSY 137
Query: 78 THPRPKPPLS----TTPRLNVDRPKRVFRGKLLTDDVSMRKFVV-EEETMMHVRKRNQME 137
+P P + T R++VD +R+FRGK L ++ MR+FVV EEE +M RKR+QME
Sbjct: 138 PPSKPLPMETAVAVATARMSVDSGRRIFRGKSLRENALMRRFVVAEEEAIMENRKRDQME 197
Query: 138 VIKRRRSVMRREKLGPSPLS 149
++++R + R++KLGPSPLS
Sbjct: 198 IVRKRNQMRRKKKLGPSPLS 216
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023515076.1 | 1.4e-29 | 55.13 | uncharacterized protein LOC111779211 [Cucurbita pepo subsp. pepo] | [more] |
XP_023004121.1 | 4.2e-29 | 53.80 | uncharacterized protein LOC111497548 [Cucurbita maxima] | [more] |
GAV66533.1 | 2.7e-28 | 54.22 | hypothetical protein CFOL_v3_10043 [Cephalotus follicularis] | [more] |
XP_022960213.1 | 3.5e-28 | 54.43 | uncharacterized protein LOC111461019 [Cucurbita moschata] | [more] |
XP_019420544.1 | 4.6e-28 | 55.42 | PREDICTED: uncharacterized protein LOC109330718 [Lupinus angustifolius] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1KR77 | 2.0e-29 | 53.80 | uncharacterized protein LOC111497548 OS=Cucurbita maxima OX=3661 GN=LOC111497548... | [more] |
A0A1Q3BFH0 | 1.3e-28 | 54.22 | Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10043 PE=4... | [more] |
A0A6J1H871 | 1.7e-28 | 54.43 | uncharacterized protein LOC111461019 OS=Cucurbita moschata OX=3662 GN=LOC1114610... | [more] |
A0A1J7GJ16 | 2.2e-28 | 55.42 | Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_18294 PE=4 S... | [more] |
A0A6A1VRZ8 | 3.8e-28 | 53.37 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G000481 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G59680.1 | 5.3e-22 | 42.86 | unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac... | [more] |
AT3G59680.2 | 5.3e-22 | 42.86 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |