Tan0006487 (gene) Snake gourd v1

Overview


Name	Tan0006487
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	sigma factor binding protein 2, chloroplastic-like
Location	LG03: 58061819 .. 58062459 (-)
RNA-Seq Expression	Tan0006487
Synteny	Tan0006487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACCAAAAAAAAAAAAAAAAAAAAACAACCCTTCTTTTTTCTCACAAAATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGATTGGCTAGGTTTAATTTATTGACAAACGTGTCTGTGGAAGATCTTTAATTTTCTGTCCTTTTTTTTTTCCCCATTTTCAACCTCTTTAATTTTAATTAGCTTCCATTTTTCCATGAGCTTTATATGATA

mRNA sequence

CCCACCAAAAAAAAAAAAAAAAAAAAACAACCCTTCTTTTTTCTCACAAAATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGATTGGCTAGGTTTAATTTATTGACAAACGTGTCTGTGGAAGATCTTTAATTTTCTGTCCTTTTTTTTTTCCCCATTTTCAACCTCTTTAATTTTAATTAGCTTCCATTTTTCCATGAGCTTTATATGATA

Coding sequence (CDS)

ATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGA

Protein sequence

MDGGGGSNGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAADLIVNDNSPSSLGAELPAEDDFLHTFYDDFDDLFLPPPVIGSFSGLLPAAAAAVMYESYAR

Homology

[Close]

BLAST of Tan0006487 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 19  RKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFDSAAA 78
           RK  K+ K+    NKPIKV YISNPM+VQT AS+F  LVQELTGQDA    P    S ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 79  AAGTAPDLLDNTAADLIVNDNSPSSLGAELPAEDDFLHTFYDDFDDLFLPPPVIGSFSG 138
                    +N A         P  L  E   E D       + +D+FLP  +   FSG
Sbjct: 84  DDHNLSPPAENLA---------PRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSG 133

[Close]

BLAST of Tan0006487 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 23 KKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPS 72
          K+ ++    +KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS
Sbjct: 25 KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPS 73

[Close]

BLAST of Tan0006487 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 116/163 (71.17%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MDGGGGSNG----HTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGGG  G    HT+LGGV RRK TKKTKQPN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA------DLIVNDNSPSSLGAELPA 120
           VQELTGQDADFPDPSKF S+   AG  PDLL +T A       L++N+N P++LG ELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDDFLHTFYDDFDDLFLPPPVIGSFSGLLPAA-AAAVMYESYA 153
           ED  + +FYDDFDDL LPPP+IG+FSG LPAA AAAVMYESYA
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Tan0006487 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50
Identity = 116/164 (70.73%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MDGGGGS---NGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGGG    N HT LGGV RRK TKKTKQPN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA------DLIVNDNSPSSLGAELPAE 120
           QELTGQDADFPDPSKFDS+   AG  P LL +TAA       L++N+N P++LG ELPAE
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120

Query: 121 DDFLHTFYDDFDDLFLPPPVIGSFSGLLPAA---AAAVMYESYA 153
           D  + +FYDDFDDL LPPP+IG+FSG LPAA   AAA+MYESYA
Sbjct: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Tan0006487 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.8 bits (530), Expect = 3.4e-50
Identity = 116/167 (69.46%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 1   MDGGGGSNG----HTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGGG  G    HT+LGGV RRK TKKTKQPN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA------DLIVNDNSPSSLGAELPA 120
           VQELTGQDADFPDPSKF S+   AG  PDLL +T A       L++N+N P++LG ELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDDFLHTFYDDFDDLFLPPPVIGSFSGLLP-----AAAAAVMYESYA 153
           ED  + +FYDDFDDL LPPP+IG+FSG LP     AAAAAVMYESYA
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 167

[Close]

BLAST of Tan0006487 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 116/165 (70.30%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MDGGGGS---NGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGGG    N HT+LGGV RRK TKKT QPN K KPIKVVYISNPMKV+TSAS+FMALV
Sbjct: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALV 60

Query: 61  QELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA-------DLIVNDNSPSSLGAELPA 120
           QELTGQDADFPDPSKF S+   AG  PDLL +TAA        L +N+N P++LG ELPA
Sbjct: 61  QELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPA 120

Query: 121 EDDFLHTFYDDFDDLFLPPPVIGSFSGLLP---AAAAAVMYESYA 153
           ED  L +FYDDFDDL LPPP+IG+FS  LP   AAAAAVMYESYA
Sbjct: 121 EDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 165

[Close]

BLAST of Tan0006487 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-42
Identity = 109/162 (67.28%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 3   GGGGSNGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           G    N H  L  V+RRK TKKTKQPNKK KPIKVVYISNPMKVQTSAS+FMALVQELTG
Sbjct: 4   GADTGNNHRILDAVNRRKPTKKTKQPNKK-KPIKVVYISNPMKVQTSASKFMALVQELTG 63

Query: 63  QDADFPDPSKFDSAAAAAGTA-PDLLDNT----------AADLIVNDNSPSSLGAELPAE 122
           +DADFPDPSKF  +A   G A  DLL NT          A++LI+N+N+  SL  ELP +
Sbjct: 64  RDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNNN-CSLAVELPVD 123

Query: 123 DDFLHTFYDDFDDLFLPPPVIGSFSGLLPAAAAAVMYESYAR 154
           DD L +FYDDFDDL  PPPVIG+FSGLLP AAAAV+YESYAR
Sbjct: 124 DDILGSFYDDFDDLIFPPPVIGNFSGLLP-AAAAVVYESYAR 162

[Close]

BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51
Identity = 116/163 (71.17%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MDGGGGSNG----HTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGGG  G    HT+LGGV RRK TKKTKQPN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA------DLIVNDNSPSSLGAELPA 120
           VQELTGQDADFPDPSKF S+   AG  PDLL +T A       L++N+N P++LG ELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDDFLHTFYDDFDDLFLPPPVIGSFSGLLPAA-AAAVMYESYA 153
           ED  + +FYDDFDDL LPPP+IG+FSG LPAA AAAVMYESYA
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 116/164 (70.73%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MDGGGGS---NGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGGG    N HT LGGV RRK TKKTKQPN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAA------DLIVNDNSPSSLGAELPAE 120
           QELTGQDADFPDPSKFDS+   AG  P LL +TAA       L++N+N P++LG ELPAE
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120

Query: 121 DDFLHTFYDDFDDLFLPPPVIGSFSGLLPAA---AAAVMYESYA 153
           D  + +FYDDFDDL LPPP+IG+FSG LPAA   AAA+MYESYA
Sbjct: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 107/159 (67.30%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MDGGGGS---NGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDG  G+   N H  L GVHRRK TKKTKQPN KNKPIKVVYISNPMKVQ SAS FMALV
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALV 60

Query: 61  QELTGQDADFPDPSKFDSAAAA-AGTAPDLLDNTAADLIVNDNSPSSLGAELPAEDD-FL 120
           Q+LTGQDADFPDPS F  AA   A   PD+ + TA   ++N+N+P SL  E+P EDD FL
Sbjct: 61  QQLTGQDADFPDPSTFPPAAVRDAAAFPDIHNTTADANLMNNNNP-SLTVEIPMEDDPFL 120

Query: 121 HTFYDDFDDLFLPPPVIGSFSGLLPAAAA-AVMYESYAR 154
            +FYDD DDL  PPPVIG++  LLPAAAA AV+YESYAR
Sbjct: 121 GSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.9e-40
Identity = 108/165 (65.45%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 1   MDGGGGS-NGHTALGGVHRRKLTKKTKQP-NKKNKPIKVVYISNPMKVQTSASEFMALVQ 60
           MD G  + + H  L  V+RRK TKKTKQP N+  KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKFDSAAAAAGTA-PDLLDNT---------AADLIVNDNSPSSLGAEL 120
           ELTGQDADFPDPSKF  +A   G A  D L NT         A +LIVN N+ SSL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNN-SSLVDEV 120

Query: 121 PAEDDFLHTFYDDFDDLFLPPPVIGSFSGLLPAAAAAVMYESYAR 154
           PAEDD L +FYDDFDDL  P PVIG+FSGLLPA  AAV+YES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.0e-39
Identity = 108/159 (67.92%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 1   MDGGGGS---NGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDG  G+   N H  L GVHRRK TKKTKQPN KNKPIKVVYISNPMKVQ SAS FMALV
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALV 60

Query: 61  QELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTA-ADLIVNDNSPSSLGAELPAEDD-FL 120
           Q+LTGQDA+FPD SKF  AAA     PD+ D TA A+L++N+N   SL  E P EDD  L
Sbjct: 61  QQLTGQDAEFPDSSKFPPAAA----FPDIHDTTADANLMMNNN--PSLTVEPPMEDDPLL 120

Query: 121 HTFYDDFDDLFLPPPVIGSFSGLLPAAAA-AVMYESYAR 154
            TFYDD DDL  PPPVIG++  LLPAAAA AV+YESYAR
Sbjct: 121 GTFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Tan0006487 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 19  RKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFDSAAA 78
           RK  K+ K+    NKPIKV YISNPM+VQT AS+F  LVQELTGQDA    P    S ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 79  AAGTAPDLLDNTAADLIVNDNSPSSLGAELPAEDDFLHTFYDDFDDLFLPPPVIGSFSG 138
                    +N A         P  L  E   E D       + +D+FLP  +   FSG
Sbjct: 84  DDHNLSPPAENLA---------PRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSG 133

[Close]

BLAST of Tan0006487 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 51.2 bits (121), Expect = 8.5e-07
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 23 KKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPS 72
          K+ ++    +KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS
Sbjct: 25 KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPS 73

The following BLAST results are available for this feature:

BLAST of Tan0006487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	2.6e-08	40.34	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	1.2e-05	57.14	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Tan0006487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931925.1	1.2e-50	71.17	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595...	[more]
XP_022966643.1	2.6e-50	70.73	uncharacterized protein LOC111466266 [Cucurbita maxima]	[more]
KAG7027424.1	3.4e-50	69.46	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023518833.1	1.7e-49	70.30	uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]	[more]
XP_038882812.1	1.2e-42	67.28	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Tan0006487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0S9	5.7e-51	71.17	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HSP6	1.3e-50	70.73	uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266...	[more]
A0A6J1EY87	1.4e-41	67.30	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A0A0L3J8	5.9e-40	65.45	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1HS32	1.0e-39	67.92	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Tan0006487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	1.8e-09	40.34	sigma factor binding protein 1	[more]
AT2G41180.1	8.5e-07	57.14	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 9.1E-13 score: 47.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..144
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006487.1	Tan0006487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity