Tan0006487 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCACCAAAAAAAAAAAAAAAAAAAAACAACCCTTCTTTTTTCTCACAAAATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGATTGGCTAGGTTTAATTTATTGACAAACGTGTCTGTGGAAGATCTTTAATTTTCTGTCCTTTTTTTTTTCCCCATTTTCAACCTCTTTAATTTTAATTAGCTTCCATTTTTCCATGAGCTTTATATGATA CCCACCAAAAAAAAAAAAAAAAAAAAACAACCCTTCTTTTTTCTCACAAAATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGATTGGCTAGGTTTAATTTATTGACAAACGTGTCTGTGGAAGATCTTTAATTTTCTGTCCTTTTTTTTTTCCCCATTTTCAACCTCTTTAATTTTAATTAGCTTCCATTTTTCCATGAGCTTTATATGATA ATGGACGGCGGCGGCGGCAGCAACGGCCACACAGCTCTCGGCGGCGTCCACCGGCGAAAGCTGACGAAGAAAACAAAACAACCCAACAAAAAGAATAAACCCATCAAAGTTGTGTACATATCGAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTGGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTTGACTCTGCAGCTGCAGCCGCCGGCACCGCCCCCGACCTCCTCGACAACACGGCTGCCGATCTGATTGTGAATGATAATAGCCCTTCTTCACTTGGTGCTGAGCTGCCGGCGGAGGACGATTTTCTTCATACCTTTTATGATGACTTTGATGACCTATTTCTTCCTCCTCCGGTCATCGGAAGCTTCTCCGGGTTGCTTCCGGCGGCGGCGGCGGCGGTGATGTATGAGTCTTATGCAAGGTGA MDGGGGSNGHTALGGVHRRKLTKKTKQPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFDSAAAAAGTAPDLLDNTAADLIVNDNSPSSLGAELPAEDDFLHTFYDDFDDLFLPPPVIGSFSGLLPAAAAAVMYESYAR Homology
BLAST of Tan0006487 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08 Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05 Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of Tan0006487 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50 Identity = 116/163 (71.17%), Postives = 130/163 (79.75%), Query Frame = 0
BLAST of Tan0006487 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima]) HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50 Identity = 116/164 (70.73%), Postives = 129/164 (78.66%), Query Frame = 0
BLAST of Tan0006487 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 208.8 bits (530), Expect = 3.4e-50 Identity = 116/167 (69.46%), Postives = 130/167 (77.84%), Query Frame = 0
BLAST of Tan0006487 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49 Identity = 116/165 (70.30%), Postives = 128/165 (77.58%), Query Frame = 0
BLAST of Tan0006487 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 183.7 bits (465), Expect = 1.2e-42 Identity = 109/162 (67.28%), Postives = 122/162 (75.31%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51 Identity = 116/163 (71.17%), Postives = 130/163 (79.75%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50 Identity = 116/164 (70.73%), Postives = 129/164 (78.66%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41 Identity = 107/159 (67.30%), Postives = 120/159 (75.47%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 5.9e-40 Identity = 108/165 (65.45%), Postives = 119/165 (72.12%), Query Frame = 0
BLAST of Tan0006487 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 1.0e-39 Identity = 108/159 (67.92%), Postives = 119/159 (74.84%), Query Frame = 0
BLAST of Tan0006487 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 ) HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09 Identity = 48/119 (40.34%), Postives = 59/119 (49.58%), Query Frame = 0
BLAST of Tan0006487 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein ) HSP 1 Score: 51.2 bits (121), Expect = 8.5e-07 Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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