Tan0006369 (gene) Snake gourd v1

Overview


Name	Tan0006369
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG03: 1187686 .. 1188024 (-)
RNA-Seq Expression	Tan0006369
Synteny	Tan0006369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATCGCTAAGGAGATCATGGGATCATTACAGGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACTTTTATTATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCTGCACCAATGCGATGATGAATAAAATAGAATATAACCTGACTACTCTCCTCAACGAGCTTCAGACTTTTGAATCCCAGATGAAATCAAAATGA

mRNA sequence

ATGGTCATCGCTAAGGAGATCATGGGATCATTACAGGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACTTTTATTATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCTGCACCAATGCGATGATGAATAAAATAGAATATAACCTGACTACTCTCCTCAACGAGCTTCAGACTTTTGAATCCCAGATGAAATCAAAATGA

Coding sequence (CDS)

ATGGTCATCGCTAAGGAGATCATGGGATCATTACAGGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACTTTTATTATGGAATCTCTTCCGAAGAGTTTCCTGCCATTCTGCACCAATGCGATGATGAATAAAATAGAATATAACCTGACTACTCTCCTCAACGAGCTTCAGACTTTTGAATCCCAGATGAAATCAAAATGA

Protein sequence

MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK

Homology

[Close]

BLAST of Tan0006369 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 198

[Close]

BLAST of Tan0006369 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 316

[Close]

BLAST of Tan0006369 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

[Close]

BLAST of Tan0006369 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MVIAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+ A+EIM SLQ MFGQ S  + +DALKY+YN+RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMESLPKSFLPFCTNAMMNKIEYNLTTLLNELQTFESQMKSK 113
           VIDE SQV+FI+ESLP+SFL F +NA+MNKI Y LTTLLNELQTFES MK K
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

The following BLAST results are available for this feature:

BLAST of Tan0006369 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006369 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	2.7e-36	74.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.7e-36	74.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.7e-36	74.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.7e-36	74.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	2.7e-36	74.11	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0006369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.3e-36	74.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.3e-36	74.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.3e-36	74.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.3e-36	74.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.3e-36	74.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0006369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 88..108
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..111 e-value: 1.2E-13 score: 51.0
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 4..110
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006369.1	Tan0006369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding