Tan0005813 (gene) Snake gourd v1

Overview
NameTan0005813
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description39S ribosomal protein L47, mitochondrial
LocationLG09: 72204105 .. 72207667 (+)
RNA-Seq ExpressionTan0005813
SyntenyTan0005813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCGGTATTTTACGTCTTGCCCTCAGTTCTTAGTTCCCTCGCAGTTCGCAGACTTGGCGTCGCCACTTCTTCCTCGTCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCCAACCCTTGTTTGAGCCTTTGCAATTCACAATCTTTCCTTTCTGAGTTCAGTCCATCGCACGACCTTCAGAATCGGAGGTCAGTGATCTCGAATTTCGAGTCATTTTGGGACCTAAGTAATTCTTCTATGTTTTTCTTCAGTTTTTTTCGGGAATCTTTTTTATAGTAAAAAACAAGAGCGAACAAGACAGGAAATTTGGTTTGTGGTTATTTGTTCTCTCGCTCGCTTTAATTTCTTTCTCTCTATCAATCTGAGATGTGCGTTATGCTATTGGGTTTGCATTGCATGCATGTCTTGTTGTTAGACGAGAGGCGGCTTAACAACTTGGGGAGAGAAATAGAGCAACGAACCAATCCGAATGAATGGTTCGGTTTGATTCAGTTCTTTAGTGTTGAGTTGCGTGTTCTGTTTACTGTATTTCAAAAAATTATTTGAAATCTGGTCTGATTTGAAATCTTGGGGTATCCAAACAGAGGGTAAAAGGATTGTTTTGTAGAAGATTGAATTGAACCAAACCAAACTATGTCCACCTCTAATTGTTAGGGTTTTAGGAAGCGTAAATTTAAAGTTGGCATTCCATTTTCAGATGATTTATTTTTGTTGTTTTTGGATTGTATGTAGTCTCACTGTTTAGTCTTTGAATTCAAGCAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGTGACAGCTGCTGCTGCTTCTACAGCTAGGATGGGGTATAATCCGCTCGAGGAGTTTTTTGAGGCCGATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTATATTCTTACTTTTCCCTTGAGCTTTGGTCTTTGGTAGCTACCTATAAATTTGTAATTTGGTTCATTCATTTTGAAGAATTTGTCTCAAGATACTGTTGTTCGGGGATGCAAATTTATACCTGGGTGTCTGGTCTTTGAACTTGAATTCATGGAGGGTCCACTCTTTCATGGGAATGAATACAAATTGATTAGATGAGCCACTGCTCTAACAGAAAAGAGCCTCCTTGTCATGCATGTAGCCTGAATGCATTGTTGAGGTAACAAGACTAGAGGTGGTTACGGACTATGGAGGACTTGGTTAATTTCAAATAATTGGTTACTGGGGACTGGATTCTGCTTCATTTTTAAAACATCACAAATGTGATATAATTTTATATGACATAATAGGTGAAAATGAGTAATTACAAATAAATATGATAGACTAATTATGCCTTCAAAGTCTAACACTTTGGAGACACCAAAGTACTCCTCCAAGAAAATATATATTCAGTTTCATCATAGTTTCAATAGAATAGCTTCCTTCTTTGTTTTCTTTGAAAACATGGTTGTTTGGAAAATTACCTGATTGGTTGTGTAGTGAAAATAGGAGCAAGGACTTCAAATAGGTGTAGGCTTCCTTGATTATGTCTGATCTATCTGCGTAGCTTGAATACCTGTCGATGCTTTCTTATTGCTGAAACTGTGTTATGTGTGCCATGTGATCAGCCCTTGAAAATTTTATGTGCACTTTTGGAATTTTTTTTTTTTTAAAGTAAAGTGTTCTGTGTATGGTTGCACTTGTGATGCGAATTCTTGTTAATACTGTAGCATGGTGTCTATCTGTTTGGTTACTCTCTTCGAATAAATATGTGGTGCCGAAAAATGCTTGTTCTTTGTCAAGAGGCTATTTTATCTAAGGATTTTAGATGCATACTTTCCTCATGTCAATTTTCAGACTTGACTTTGTACAAAGTTGCTACATATATATAGGCCCTACTTCTGAGGAATAAAGACGTCTCTTAAAAGTTAAAACAACCAGAATCAAAGTATGTAATAGAAGATTTTATGAGATTTGGAATGTTCTCTCTCTTGGTGGTCACCTATTTTGGATATGAGTATCCTTAAAGTTGTCTGACTCTAATTCTATAGGCTTAGATACTTGTGTGAGACCCAAATACTCCCGGTCCTGGATGACAAAAGAATCCTCTTAGTTTGGTGGCCATGGCGACCTATATGAGATATTAGTATCTTATGAATTTTGCAATGTATAATTCTGTACAATTAGCTCATGGACATACATACGGTTCTTTGCAAATAGAAAAGGCCCTTGTAGCTTGGAAATTTTCTTCAGTGCGTCGTGATTGGAATTTATAGTATAGATAAACAACTGTGGGCCAAAAGACAAACCTCACCTTTCTTGAAAAATGGAAGGGAAGAAAAAACCCATTCATTAGAAGTTAGAAATAGTCCTCTAGAATCTCAGCTGGCTGATATTTTGTGCTTCGTTCAAAAGACATTATTGAGTTTCTCATTGCAATTCCTATGCTGTCAGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGTTATGGTATGTCCTCTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTCATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCGTTCCCAAGGTATACTTGTCAAAGCTTATGCCTTATGTATTATTTTTAATTTGTAAACATCAGTTCAACCTGCTTTCTATGTTTTGTTGTATTTGTTCCCTCCTCGTGTAATCTTAGAGTTGTTAATAGCTCTCCTTCCACTACTTTTCTATTCTAACGTCGATGGTGGTTGTTGATGATTGTAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCAGGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTTTGATAAGCTAAACAACATTTCAAAGCCAGCCTTGTATGTGGTGGAGTTTACCATCCCGGTTACGAAGGGAGGAATAGTTAGCGAGATAATACAAACACCACCCTATCGATTTCGTTCATTCTGTAATCAAGGATCTGATTAGAAGCCTAGTTATTGTTTTATAATTTCTAATCTAGTTTTTAATCGACGGTAATCAAAGTTTTGGAGATGTTTTTATTTATGCCAACATTATGATGATGGCCAAGCTTATTCTAGAAGATTTGGAATACACACAAATTAGATCTGATGTGTGTGTGTGTGGAGTAAGTTGAAAATGAAAGAGTTGACAAAAGAAAAAAAAAGAAGGAAAAAGGAAAAAAGAAAAGGAAAAATATTGATGGTTTGATGTGCTGTTGGGAAAATGAAAGTAGTATCGTCATGAATGTTAGGAGGACCATAAACACAAAGGTAGAATGTGTGTTGATGCTTTGGCTTTGATGATCCTGTGCCAGTGGCTCATTCCAATTCTATTCCCTACACAAAGGGGGGCAAACCCACATGATTGGATTAGACATCTTGCTTTTTGATTAGCTTCTTAATCAAGATTGTTTATTCATGAGGGGCAGGCAAACAAAGGAGAGGGGCCCTCTTCCTCTTCCTCTTTCC

mRNA sequence

TGTCGGTATTTTACGTCTTGCCCTCAGTTCTTAGTTCCCTCGCAGTTCGCAGACTTGGCGTCGCCACTTCTTCCTCGTCGGAGCGCAGATCGTTGCCGCTTGCCGGAGCCAACCCTTGTTTGAGCCTTTGCAATTCACAATCTTTCCTTTCTGAGTTCAGTCCATCGCACGACCTTCAGAATCGGAGCATTGGTGCAGCCATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGTGACAGCTGCTGCTGCTTCTACAGCTAGGATGGGGTATAATCCGCTCGAGGAGTTTTTTGAGGCCGATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGTTATGGTATGTCCTCTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTCATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCGTTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAGGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTTTGATAAGCTAAACAACATTTCAAAGCCAGCCTTGTATGTGGTGGAGTTTACCATCCCGGTTACGAAGGGAGGAATAGTTAGCGAGATAATACAAACACCACCCTATCGATTTCGTTCATTCTGTAATCAAGGATCTGATTAGAAGCCTAGTTATTGTTTTATAATTTCTAATCTAGTTTTTAATCGACGGTAATCAAAGTTTTGGAGATGTTTTTATTTATGCCAACATTATGATGATGGCCAAGCTTATTCTAGAAGATTTGGAATACACACAAATTAGATCTGATGTGTGTGTGTGTGGAGTAAGTTGAAAATGAAAGAGTTGACAAAAGAAAAAAAAAGAAGGAAAAAGGAAAAAAGAAAAGGAAAAATATTGATGGTTTGATGTGCTGTTGGGAAAATGAAAGTAGTATCGTCATGAATGTTAGGAGGACCATAAACACAAAGGTAGAATGTGTGTTGATGCTTTGGCTTTGATGATCCTGTGCCAGTGGCTCATTCCAATTCTATTCCCTACACAAAGGGGGGCAAACCCACATGATTGGATTAGACATCTTGCTTTTTGATTAGCTTCTTAATCAAGATTGTTTATTCATGAGGGGCAGGCAAACAAAGGAGAGGGGCCCTCTTCCTCTTCCTCTTTCC

Coding sequence (CDS)

ATGTTTCTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGTGACAGCTGCTGCTGCTTCTACAGCTAGGATGGGGTATAATCCGCTCGAGGAGTTTTTTGAGGCCGATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAGTTATGGTATGTCCTCTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTCATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCGTTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCAGGTACTTACCGAGAGAGCCATCGAAGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTTTGA

Protein sequence

MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Homology
[Close]
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 37  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 96
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLRFPNPERVPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 37  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 96
           LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLRFPNPERVPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-13
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0 

Query: 37  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQ 96
           LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 64  LEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 123

Query: 97  NLRFPNPERVPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 124 RLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 35  NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML 94
           +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +
Sbjct: 36  HPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEM 95

Query: 95  HAQNLRFP--NPERVPKVRKSMCRIKQVLTER 124
               L  P  + ERV  V K+M  IK VL ER
Sbjct: 96  KRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

[Close]
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 37  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLH 96
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 97  AQNLRFPNP---ERVPKVRKSMCRIKQVLTERAIEEPDPRRSAE 136
              L F      ER   VR++M  IK VLTER     D  + AE
Sbjct: 159 KSGLGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAE 202

[Close]
BLAST of Tan0005813 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-69
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSS T AAA+TARMGYNPLEEFFEADRSPDDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of Tan0005813 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-67
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+FPNPER+PKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of Tan0005813 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 8.3e-67
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+ KVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of Tan0005813 vs. NCBI nr
Match: XP_022135437.1 (39S ribosomal protein L47, mitochondrial [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.4e-66
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSS  AAAAST R GYNPLEEFFEADRSPDDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTLLAAARSETSS-AAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF NPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAIEEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMINAL 142

[Close]
BLAST of Tan0005813 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.1e-66
Identity = 130/143 (90.91%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTR+FGRTFLAAARSE S+ TAAA STAR GYNPLEEFFE  RSP+DDKPVVYGRSWK
Sbjct: 1   MFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 143

[Close]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+FPNPER+PKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-67
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRTFLAAARSETSS TAAAA+TAR GYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+ KVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRVFGRT LAAARSETSS  AAAAST R GYNPLEEFFEADRSPDDDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTLLAAARSETSS-AAAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRF NPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAIEEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMINAL 142

[Close]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match: A0A6J1I0P6 (39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467922 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 130/143 (90.91%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           M LTR+FGRTFLAAARSETS+ TAAA STAR GYNPLEEFFEA RSPDDDKPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRR AE+KRM+NAL
Sbjct: 121 TERAIDEPDPRRCAELKRMVNAL 143

[Close]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVTAAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60
           MFLTRV GR FLAAARSETSS  AAAASTA  GYNPLEEFFEADRSPDDDKPVVYGRSWK
Sbjct: 1   MFLTRVIGRRFLAAARSETSS-AAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEEPDPRRSAEMKRMINAL 144
           TERAI+EPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 142

[Close]
BLAST of Tan0005813 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 0 

Query: 1   MFLTRVFGRTFLAAARSETSSVT-AAAASTARMGYNPLEEFFEADRSPDDDKPVVYGRSW 60
           MFLTR  GR FLAAA + + S T AAAAST R   NPLEEFFE DRS D+DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQV 120
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPER+PKVR+SMCRIK V
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 121 LTERAIEEPDPRRSAEMKRMINAL 144
           LTERAIEEPD RRSAEMKRM+N +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:
BLAST of Tan0005813 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8K2Y71.1e-1349.4339S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1... [more]
Q08DT61.9e-1349.4339S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV... [more]
Q9HD337.2e-1348.2839S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ... [more]
P872321.1e-1044.5754S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972... [more]
Q2H0801.3e-0941.3554S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205... [more]
BLAST of Tan0005813 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879389.12.3e-6995.8039S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S... [more]
XP_004138121.12.2e-6793.7139S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti... [more]
XP_008453113.18.3e-6793.71PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo][more]
XP_022135437.12.4e-6695.1039S ribosomal protein L47, mitochondrial [Momordica charantia][more]
XP_023530690.14.1e-6690.9139S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
BLAST of Tan0005813 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS481.1e-6793.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1[more]
A0A1S3BWK44.0e-6793.7139S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926... [more]
A0A6J1C2P61.2e-6695.1039S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1I0P62.6e-6690.9139S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1JCZ21.3e-6593.0139S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
BLAST of Tan0005813 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07830.11.5e-5879.86ribosomal protein L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 37..123
e-value: 1.1E-34
score: 118.4
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 1..143
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 33..133
e-value: 3.3E-31
score: 109.3
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 62..123
e-value: 1.5594E-11
score: 54.0307
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 59..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005813.1Tan0005813.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005761 mitochondrial ribosome
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome