Tan0005700 (gene) Snake gourd v1

Overview


Name	Tan0005700
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Location	LG06: 46277967 .. 46278648 (+)
RNA-Seq Expression	Tan0005700
Synteny	Tan0005700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGCCATCGACGTCTTGGTTGGCCGCGGCGATAAGAGCGAACAAATCTGAGCACCCATTGTTTGTTCTCTCGATTCTTACGATAGATCTCCATGTGTATGTTTTTATGATTTGCATCTGAAGTAATTTGATCAGCCCTTTCTATTCTTAAAATCGAATTTTTTAATGTAGGTGTTTTGGTCACGTTTTCTTGTCCTTTTGTTTTGGATCTTTCATTTAGATTTATTGCATAATTCCAGACCTATTGTTGTTGGTCTATAGTTTTCGAAATGATCCCTTCATCACCACTGATTATTGCATATTTAGTGTTGAGCCTTTATAGTTTTCAAAATGTAACTTTTTACCACTGTATACGACAGACCTACATGTTCAAGTATGATAATGTACACGGCCAGTGAAAGCACCATGATATAAGGTTAAAGACAACAAGACTATTCTCTTTAGGGAGAAAGCAATCACCGTTTTCGGTACTATGTATTTTCATGCTCTTTCTTCTTGTCCTTCTATTTTTTTAAAAAAATTAAACAATGTTTTTATCCAACAATTGAGCATTTGACTTGTTCATTAGGAACCCAGAGGAGATCCCATGGGGAGAGGCTGGAGCTGAATATGTTGTTGAATCCACCGGAGTTTTCACTGACAAAGACAATGTTGCTGCTCATTTGAAGGTTTGTTGA

mRNA sequence

ATGACAGTGCCATCGACGTCTTGGTTGGCCGCGGCGATAAGAGCGAACAAATCTGAGCACCCATTGTTTGTTCTCTCGATTCTTACGATAGATCTCCATGTGAACCCAGAGGAGATCCCATGGGGAGAGGCTGGAGCTGAATATGTTGTTGAATCCACCGGAGTTTTCACTGACAAAGACAATGTTGCTGCTCATTTGAAGGTTTGTTGA

Coding sequence (CDS)

ATGACAGTGCCATCGACGTCTTGGTTGGCCGCGGCGATAAGAGCGAACAAATCTGAGCACCCATTGTTTGTTCTCTCGATTCTTACGATAGATCTCCATGTGAACCCAGAGGAGATCCCATGGGGAGAGGCTGGAGCTGAATATGTTGTTGAATCCACCGGAGTTTTCACTGACAAAGACAATGTTGCTGCTCATTTGAAGGTTTGTTGA

Protein sequence

MTVPSTSWLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLKVC

Homology

[Close]

BLAST of Tan0005700 vs. ExPASy Swiss-Prot
Match: Q09054 (Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Zea mays OX=4577 GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-12
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W  + I    S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 56  WKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 115

[Close]

BLAST of Tan0005700 vs. ExPASy Swiss-Prot
Match: P08735 (Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Zea mays OX=4577 GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-12
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W  + I    S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 56  WKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 115

[Close]

BLAST of Tan0005700 vs. ExPASy Swiss-Prot
Match: P26520 (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida OX=4102 GN=GAPC PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.6e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++A   +  LF    +T+    NPEEIPWGEAGA+YVVESTGVFTDKD  AAHLK
Sbjct: 56  WKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLK 115

[Close]

BLAST of Tan0005700 vs. ExPASy Swiss-Prot
Match: P26517 (Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Hordeum vulgare OX=4513 GN=GAPC PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W  + I+    +  LF    +T+    NPEEIPWGEAGA+YVVESTGVFTDKD  AAHLK
Sbjct: 56  WKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLK 115

[Close]

BLAST of Tan0005700 vs. ExPASy Swiss-Prot
Match: P26519 (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum OX=4043 GN=GAPC PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-12
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    LT+    NPEE PWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 55  WKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLK 114

[Close]

BLAST of Tan0005700 vs. NCBI nr
Match: MBA0579725.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 48  WKHHELKVKDSKTLLFGEKPVTVFGIKNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 107

Query: 68  VC 70
           VC
Sbjct: 108 VC 109

[Close]

BLAST of Tan0005700 vs. NCBI nr
Match: MBA0705070.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 46  WKHHELKVKDSKTLLFGEKPVTVFGIKNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 105

Query: 68  VC 70
           VC
Sbjct: 106 VC 107

[Close]

BLAST of Tan0005700 vs. NCBI nr
Match: KAE9454230.1 (hypothetical protein C3L33_13904, partial [Rhododendron williamsianum])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 8  WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
          W    ++   S+  LF   ++T+  H NPEEIPWGE GAE+VVESTGVFTDKD  AAHLK
Sbjct: 11 WKHHELKVKDSKTLLFGEKLVTVFGHRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLK 70

Query: 68 V 69
          V
Sbjct: 71 V 71

[Close]

BLAST of Tan0005700 vs. NCBI nr
Match: KAG5521924.1 (hypothetical protein RHGRI_034219 [Rhododendron griersonianum] >KAG5521926.1 hypothetical protein RHGRI_034219 [Rhododendron griersonianum])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF   ++T+  H NPEEIPWGE GAE+VVESTGVFTDKD  AAHLK
Sbjct: 59  WKHHELKVKDSKTLLFGEKLVTVFGHRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLK 118

[Close]

BLAST of Tan0005700 vs. NCBI nr
Match: KAG5521923.1 (hypothetical protein RHGRI_034219 [Rhododendron griersonianum] >KAG5521925.1 hypothetical protein RHGRI_034219 [Rhododendron griersonianum])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF   ++T+  H NPEEIPWGE GAE+VVESTGVFTDKD  AAHLK
Sbjct: 75  WKHHELKVKDSKTLLFGEKLVTVFGHRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLK 134

[Close]

BLAST of Tan0005700 vs. ExPASy TrEMBL
Match: A0A7J8NRV7 (Gp_dh_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_021971 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 48  WKHHELKVKDSKTLLFGEKPVTVFGIKNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 107

Query: 68  VC 70
           VC
Sbjct: 108 VC 109

[Close]

BLAST of Tan0005700 vs. ExPASy TrEMBL
Match: A0A7J8Z0F5 (Gp_dh_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_017287 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPWGEAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 46  WKHHELKVKDSKTLLFGEKPVTVFGIKNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLK 105

Query: 68  VC 70
           VC
Sbjct: 106 VC 107

[Close]

BLAST of Tan0005700 vs. ExPASy TrEMBL
Match: A0A6A4L7F9 (Gp_dh_N domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_13904 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 8  WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
          W    ++   S+  LF   ++T+  H NPEEIPWGE GAE+VVESTGVFTDKD  AAHLK
Sbjct: 11 WKHHELKVKDSKTLLFGEKLVTVFGHRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLK 70

Query: 68 V 69
          V
Sbjct: 71 V 71

[Close]

BLAST of Tan0005700 vs. ExPASy TrEMBL
Match: A0A7J9AR65 (Gp_dh_N domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_002286 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPW EAGAEYVVESTGVFTDKD  AAHLK
Sbjct: 46  WKHHELKVKDSKTLLFGEKSVTVFGIRNPEEIPWAEAGAEYVVESTGVFTDKDKAAAHLK 105

Query: 68  VC 70
           VC
Sbjct: 106 VC 107

[Close]

BLAST of Tan0005700 vs. ExPASy TrEMBL
Match: A0A6A2XUL5 (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112530pilonHSYRG00131 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 8   WLAAAIRANKSEHPLFVLSILTIDLHVNPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 67
           W    ++   S+  LF    +T+    NPEEIPWGE GA+YVVESTGVFTDKD  AAHLK
Sbjct: 45  WKHQELKVKDSKALLFGEKPVTVFGIRNPEEIPWGETGADYVVESTGVFTDKDKAAAHLK 104

Query: 68  VC 70
           VC
Sbjct: 105 VC 106

[Close]

BLAST of Tan0005700 vs. TAIR 10
Match: AT1G13440.1 (glyceraldehyde-3-phosphate dehydrogenase C2 )

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 35  NPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 68
           NPE+IPWGEAGA++VVESTGVFTDKD  AAHLK
Sbjct: 85  NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLK 117

[Close]

BLAST of Tan0005700 vs. TAIR 10
Match: AT1G13440.2 (glyceraldehyde-3-phosphate dehydrogenase C2 )

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 35  NPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 68
           NPE+IPWGEAGA++VVESTGVFTDKD  AAHLK
Sbjct: 85  NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLK 117

[Close]

BLAST of Tan0005700 vs. TAIR 10
Match: AT3G04120.1 (glyceraldehyde-3-phosphate dehydrogenase C subunit 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 35  NPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 68
           NPE+IPW EAGA+YVVESTGVFTDKD  AAHLK
Sbjct: 85  NPEDIPWAEAGADYVVESTGVFTDKDKAAAHLK 117

[Close]

BLAST of Tan0005700 vs. TAIR 10
Match: AT1G79530.1 (glyceraldehyde-3-phosphate dehydrogenase of plastid 1 )

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 35  NPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 68
           +P EIPW + GA+YVVES+GVFT     A+HLK
Sbjct: 165 DPSEIPWADLGADYVVESSGVFTTLSKAASHLK 197

[Close]

BLAST of Tan0005700 vs. TAIR 10
Match: AT1G16300.1 (glyceraldehyde-3-phosphate dehydrogenase of plastid 2 )

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 35  NPEEIPWGEAGAEYVVESTGVFTDKDNVAAHLK 68
           +P EIPW + GAEYVVES+GVFT     ++HLK
Sbjct: 163 DPAEIPWADLGAEYVVESSGVFTTVGQASSHLK 195

The following BLAST results are available for this feature:

BLAST of Tan0005700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09054	2.9e-12	61.67	Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Zea mays OX=4577 GN=GAP...	[more]
P08735	3.8e-12	61.67	Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Zea mays OX=4577 GN=GAP...	[more]
P26520	6.6e-12	58.33	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida OX=4102 G...	[more]
P26517	8.6e-12	58.33	Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Hordeum vulgare OX=4513...	[more]
P26519	8.6e-12	60.00	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum OX=4...	[more]

BLAST of Tan0005700 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0579725.1	7.0e-11	61.29	hypothetical protein [Gossypium raimondii]	[more]
MBA0705070.1	7.0e-11	61.29	hypothetical protein [Gossypium laxum]	[more]
KAE9454230.1	1.2e-10	59.02	hypothetical protein C3L33_13904, partial [Rhododendron williamsianum]	[more]
KAG5521924.1	2.6e-10	58.33	hypothetical protein RHGRI_034219 [Rhododendron griersonianum] >KAG5521926.1 hyp...	[more]
KAG5521923.1	2.6e-10	58.33	hypothetical protein RHGRI_034219 [Rhododendron griersonianum] >KAG5521925.1 hyp...	[more]

BLAST of Tan0005700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8NRV7	3.4e-11	61.29	Gp_dh_N domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=...	[more]
A0A7J8Z0F5	3.4e-11	61.29	Gp_dh_N domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_017287 PE...	[more]
A0A6A4L7F9	5.8e-11	59.02	Gp_dh_N domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26...	[more]
A0A7J9AR65	1.7e-10	59.68	Gp_dh_N domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Gola...	[more]
A0A6A2XUL5	2.2e-10	58.06	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hibiscus syriacus OX=1063...	[more]

BLAST of Tan0005700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13440.1	1.1e-11	84.85	glyceraldehyde-3-phosphate dehydrogenase C2	[more]
AT1G13440.2	1.1e-11	84.85	glyceraldehyde-3-phosphate dehydrogenase C2	[more]
AT3G04120.1	2.0e-11	84.85	glyceraldehyde-3-phosphate dehydrogenase C subunit 1	[more]
AT1G79530.1	1.5e-06	60.61	glyceraldehyde-3-phosphate dehydrogenase of plastid 1	[more]
AT1G16300.1	2.5e-06	60.61	glyceraldehyde-3-phosphate dehydrogenase of plastid 2	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 13..68 e-value: 3.6E-11 score: 44.6
None	No IPR available	PANTHER	PTHR10836:SF88	GLYCERALDEHYDE/ERYTHROSE PHOSPHATE DEHYDROGENASE FAMILY-RELATED	coord: 21..67
IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	PANTHER	PTHR10836	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	coord: 21..67
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 29..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005700.1	Tan0005700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor