Tan0005461 (gene) Snake gourd v1

Overview
NameTan0005461
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG11: 61471347 .. 61471568 (-)
RNA-Seq ExpressionTan0005461
SyntenyTan0005461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGTTGAGACGACATTACGGGTAGAGCGAAGCCTGGTAGATGACAGAATGGGAAAATGA

mRNA sequence

ATGACAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGTTGAGACGACATTACGGGTAGAGCGAAGCCTGGTAGATGACAGAATGGGAAAATGA

Coding sequence (CDS)

ATGACAGTAACAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAACGAGATAGATCGATGCAAGAGGTTCGAGGATGGTCTACGAACAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGTTGAGACGACATTACGGGTAGAGCGAAGCCTGGTAGATGACAGAATGGGAAAATGA

Protein sequence

MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTLRVERSLVDDRMGK
Homology
[Close]
BLAST of Tan0005461 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 200 RVEKSL 205

[Close]
BLAST of Tan0005461 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 234 RVEKSL 239

[Close]
BLAST of Tan0005461 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MT+ EYEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 222 RVEKSL 227

[Close]
BLAST of Tan0005461 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTVT+YEKK+TELSKYA+ ++ +E++RCKRFE+GL+ EIRTPVT  ++W +FSKLVE  L
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 226 RVEKSL 231

[Close]
BLAST of Tan0005461 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 6.9e-17
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           ++V EYEKK+TELS+YA  IVA+E DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDR 71
           RVE+S+ +++
Sbjct: 268 RVEQSITEEK 277

[Close]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 234 RVEKSL 239

[Close]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTV EYEKK+TELSKYA+ ++ +E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 200 RVEKSL 205

[Close]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MT+ EYEKK+TELS YA+ ++ +E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 222 RVEKSL 227

[Close]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           MTVT+YEKK+TELSKYA+ ++ +E++RCKRFE+GL+ EIRTPVT  ++W +FSKLVE  L
Sbjct: 166 MTVTKYEKKYTELSKYATRVIEDEVERCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAAL 225

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 226 RVEKSL 231

[Close]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-17
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MTVTEYEKKFTELSKYASTIVANEIDRCKRFEDGLRTEIRTPVTASSEWVEFSKLVETTL 60
           ++V EYEKK+TELS+YA  IVA+E DRC+RFE GLR EIRTPVTA ++W  FS+LVET L
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDR 71
           RVE+S+ +++
Sbjct: 268 RVEQSITEEK 277

The following BLAST results are available for this feature:
BLAST of Tan0005461 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005461 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036813.13.1e-1769.70DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYJ95881.13.1e-1769.70retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0060484.14.0e-1766.67Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag... [more]
KAA0035225.14.0e-1766.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
KAA0035138.16.9e-1764.29DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BB911.5e-1769.70Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7T1M01.5e-1769.70Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5A7UZM62.0e-1766.67Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DES52.0e-1766.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SX063.3e-1764.29DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Tan0005461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005461.1Tan0005461.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding