Tan0005386 (gene) Snake gourd v1

Overview


Name	Tan0005386
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L14
Location	LG06: 9849295 .. 9849928 (-)
RNA-Seq Expression	Tan0005386
Synteny	Tan0005386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGAAATGCACGACGCGACGAAAAAATATGGGTACGTATATTTCCAGACAAACTCGTTACACTAAGACCCACAGAAACATGTATGGGTTCAGGGAAAGGATCCCCTGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATGTAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAAAAATGTAGAATCAAAGGAAAGCGGTCTTTGTTTGAGATGAAAAAAAAAACAATTGCAATTGGAGATTTCTTTTTTTTTTGGACAAACAATATTTTCTATTTTTGTTGGACAAACAATAAATATATATTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATATAGCAGATAACAGCGGAGCCTGAGAATTGATGTGTATTCGAATCATAGGCGCTAATAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGTTGTAATTGTACGTATTTGTAAAGAACTCAAATGA

mRNA sequence

ATGACACGAAATGCACGACGCGACGAAAAAATATGGGTACGTATATTTCCAGACAAACTCGTTACACTAAGACCCACAGAAACATGTATGGGTTCAGGGAAAGGATCCCCTGAATATTGGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATATAGCAGATAACAGCGCTAATAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGTTGTAATTGTACGTATTTGTAAAGAACTCAAATGA

Coding sequence (CDS)

ATGACACGAAATGCACGACGCGACGAAAAAATATGGGTACGTATATTTCCAGACAAACTCGTTACACTAAGACCCACAGAAACATGTATGGGTTCAGGGAAAGGATCCCCTGAATATTGGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATATAGCAGATAACAGCGCTAATAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGTTGTAATTGTACGTATTTGTAAAGAACTCAAATGA

Protein sequence

MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQPQTLLNIADNSANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK

Homology

[Close]

BLAST of Tan0005386 vs. ExPASy Swiss-Prot
Match: Q8WKP4 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 53/70 (75.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQTLLN+ADNS            A+NRRYAHIGDVIVAVIKK VPNTPLERSEVIR 
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. ExPASy Swiss-Prot
Match: A4QJF1 (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPLERSEVIR 
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. ExPASy Swiss-Prot
Match: A4QJN5 (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPLERSEVIR 
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. ExPASy Swiss-Prot
Match: P56792 (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPLERSEVIR 
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. ExPASy Swiss-Prot
Match: A4QKE1 (50S ribosomal protein L14, chloroplastic OS=Barbarea verna OX=50458 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPLERSEVIR 
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. NCBI nr
Match: KAG9137039.1 (hypothetical protein Leryth_026748 [Lithospermum erythrorhizon])

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38
Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQPQTLLNIADNS 60
           MTRNARR  K+WVRIFPDK VT RP ET MGSGKGSPEYWKRF+N+MIQPQT LN+ADNS
Sbjct: 38  MTRNARRGGKLWVRIFPDKPVTQRPAETRMGSGKGSPEYWKRFKNDMIQPQTYLNVADNS 97

Query: 61  ------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK 105
                       A+NRRYAHIGDVIVAVIK+ VPN PLERSEV+R VIVR CKELK
Sbjct: 98  GARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELK 153

[Close]

BLAST of Tan0005386 vs. NCBI nr
Match: KAG9147420.1 (hypothetical protein Leryth_027194 [Lithospermum erythrorhizon])

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38
Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQPQTLLNIADNS 60
           MTRNARR  K+WVRIFPDK VT RP ET MGSGKGSPEYWKRF+N+MIQPQT LN+ADNS
Sbjct: 38  MTRNARRGGKLWVRIFPDKPVTQRPAETRMGSGKGSPEYWKRFKNDMIQPQTYLNVADNS 97

Query: 61  ------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK 105
                       A+NRRYAHIGDVIVAVIK+ VPN PLERSEV+R VIVR CKELK
Sbjct: 98  GARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELK 153

[Close]

BLAST of Tan0005386 vs. NCBI nr
Match: KAG6392826.1 (hypothetical protein SASPL_147054 [Salvia splendens])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 84/116 (72.41%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQPQTLLNIADNS 60
           MTRNARR  KIWVR+FPDK VT+RP ET MGSGKGSPEYW RF+  MIQPQT LN+ADNS
Sbjct: 38  MTRNARRGGKIWVRLFPDKPVTVRPAETRMGSGKGSPEYWNRFKIYMIQPQTYLNVADNS 97

Query: 61  ------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK 105
                       A+NRRYAHIGDVIVAVIK+VVPNTPLE+SEV+R VIVR CK+LK
Sbjct: 98  GARKLMCIRIIGASNRRYAHIGDVIVAVIKEVVPNTPLEKSEVVRAVIVRTCKKLK 153

[Close]

BLAST of Tan0005386 vs. NCBI nr
Match: KAF4355632.1 (hypothetical protein F8388_013049 [Cannabis sativa])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW-------------KRFQNNM 60
           MTRNARR  KIWVRIFPDK +T+RPTET MGSGKGSPEYW                +N+M
Sbjct: 1   MTRNARRSGKIWVRIFPDKSITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGIKNDM 60

Query: 61  IQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVV 105
           IQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPL+RSEVIR V
Sbjct: 61  IQPQTQLNVADNSGAGKLMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLDRSEVIRAV 120

[Close]

BLAST of Tan0005386 vs. NCBI nr
Match: KAF9660677.1 (hypothetical protein SADUNF_SadunfPtG0000200 [Salix dunnii] >KAF9664285.1 hypothetical protein SADUNF_Sadunf16G0002000 [Salix dunnii])

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-32
Identity = 81/121 (66.94%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRF-----QNNMIQPQTLLN 60
           MTRN RR  KIWVRIFPDK VTLRP+ET MGSGKGSPEYW        + NMIQ QT LN
Sbjct: 38  MTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKGSPEYWVAVVKPDSKKNMIQSQTHLN 97

Query: 61  IADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKEL 105
           +ADNS             +NRRYAHIGDVI+AVIK+ VPN+PLERSEVIR VIVR  KEL
Sbjct: 98  VADNSGARELMCIRIIGTSNRRYAHIGDVIIAVIKEAVPNSPLERSEVIRAVIVRTSKEL 157

[Close]

BLAST of Tan0005386 vs. ExPASy TrEMBL
Match: A0A7J6EBC5 (Ribosomal_L16 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_013049 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 82/129 (63.57%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW-------------KRFQNNM 60
           MTRNARR  KIWVRIFPDK +T+RPTET MGSGKGSPEYW                +N+M
Sbjct: 1   MTRNARRSGKIWVRIFPDKSITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGIKNDM 60

Query: 61  IQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVV 105
           IQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPL+RSEVIR V
Sbjct: 61  IQPQTQLNVADNSGAGKLMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLDRSEVIRAV 120

[Close]

BLAST of Tan0005386 vs. ExPASy TrEMBL
Match: A0A444Z5W7 (Ribosomal_L16 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g077921 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.9e-32
Identity = 80/127 (62.99%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRF-----------QNNMIQ 60
           M+RN RR  +IWVRIFPDKLVT+RPTET MGSGKGSPEYW               N+MIQ
Sbjct: 38  MSRNVRRGGQIWVRIFPDKLVTIRPTETRMGSGKGSPEYWVAVVKPSRILYEIGGNDMIQ 97

Query: 61  PQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIV 105
           PQT LN+ADNS            A NRRYA IGD++VAVIK+ VPN  LERSEVIR VIV
Sbjct: 98  PQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIV 157

[Close]

BLAST of Tan0005386 vs. ExPASy TrEMBL
Match: A0A4Y7JZ00 (Ribosomal_L16 domain-containing protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_008615 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.6e-31
Identity = 89/166 (53.61%), Postives = 93/166 (56.02%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW-------------------- 60
           MTR ARR  KIWVRIFPDK VTLRPTET MGSGKGSPEYW                    
Sbjct: 38  MTRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSEIV 97

Query: 61  -----------------------------KRFQNN-MIQPQTLLNIADNS---------- 105
                                        K  +NN MIQPQTLLN+ADNS          
Sbjct: 98  AREDISIVAKCLYELNSLLQNRDVQPKERKTIKNNDMIQPQTLLNVADNSGARKLMCIRI 157

[Close]

BLAST of Tan0005386 vs. ExPASy TrEMBL
Match: A0A5N6PW93 (Ribosomal_L2_C domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_04319 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-30
Identity = 77/116 (66.38%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQPQTLLNIADNS 60
           MTRNARR  KIWVRIFPDK VT+RPTET MGSGKGSPEYW      +++P  +L   DNS
Sbjct: 220 MTRNARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVA----VVKPGRILYEMDNS 279

Query: 61  ------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK 105
                       A+NRRYAHIGDVIVAVIK  VPN PLERSEV+R VIVR CKELK
Sbjct: 280 GARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELK 331

[Close]

BLAST of Tan0005386 vs. ExPASy TrEMBL
Match: A0A5D3CZ11 (50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001730 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-30
Identity = 77/109 (70.64%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYWKRFQNNMIQP-----QTLLN 60
           MTRNARR  KIWVRIFPDK VTLRPTET MGSGKGSPEYW      +++P     + L+ 
Sbjct: 38  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVA----VVKPDNSGARELMC 97

Query: 61  IADNSANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRVVIVRICKELK 105
           I    A+NRRYAHIGDVIV VIKKVVPNTPLERSEVI  VI+R CKELK
Sbjct: 98  IRIIGASNRRYAHIGDVIVPVIKKVVPNTPLERSEVIIAVIIRTCKELK 142

[Close]

BLAST of Tan0005386 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-19
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 47  MIQPQTLLNIADNS------------ANNRRYAHIGDVIVAVIKKVVPNTPLERSEVIRV 105
           MIQPQT LN+ADNS            A+NRRYAHIGDVIVAVIK+ +PNTPLERSEVIR 
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

[Close]

BLAST of Tan0005386 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-14
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW 41
          MTRN RR  KIWVRIFPDK VT+RP ET MGSGKGSPEYW
Sbjct: 54 MTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYW 93

[Close]

BLAST of Tan0005386 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 50.8 bits (120), Expect = 7.5e-07
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW 41
           MTRN  R   + V IF DK VT+RP ET MG GKG+P +W
Sbjct: 881 MTRNIGRGLTVRVHIFADKPVTVRPPETRMGRGKGAPAFW 920

[Close]

BLAST of Tan0005386 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   MTRNARRDEKIWVRIFPDKLVTLRPTETCMGSGKGSPEYW 41
           M+   RR+ KIWVR+F D  +T +PTE  MG GKG+P  W
Sbjct: 98  MSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGW 137

The following BLAST results are available for this feature:

BLAST of Tan0005386 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WKP4	1.7e-19	75.71	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
A4QJF1	2.4e-18	71.43	50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium OX=434059 GN=...	[more]
A4QJN5	2.4e-18	71.43	50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=...	[more]
P56792	2.4e-18	71.43	50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl1...	[more]
A4QKE1	2.4e-18	71.43	50S ribosomal protein L14, chloroplastic OS=Barbarea verna OX=50458 GN=rpl14 PE=...	[more]

BLAST of Tan0005386 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG9137039.1	2.0e-38	74.14	hypothetical protein Leryth_026748 [Lithospermum erythrorhizon]	[more]
KAG9147420.1	2.0e-38	74.14	hypothetical protein Leryth_027194 [Lithospermum erythrorhizon]	[more]
KAG6392826.1	3.8e-37	72.41	hypothetical protein SASPL_147054 [Salvia splendens]	[more]
KAF4355632.1	2.6e-33	63.57	hypothetical protein F8388_013049 [Cannabis sativa]	[more]
KAF9660677.1	3.7e-32	66.94	hypothetical protein SADUNF_SadunfPtG0000200 [Salix dunnii] >KAF9664285.1 hypoth...	[more]

BLAST of Tan0005386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6EBC5	1.2e-33	63.57	Ribosomal_L16 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_0130...	[more]
A0A444Z5W7	8.9e-32	62.99	Ribosomal_L16 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g0...	[more]
A0A4Y7JZ00	7.6e-31	53.61	Ribosomal_L16 domain-containing protein (Fragment) OS=Papaver somniferum OX=3469...	[more]
A0A5N6PW93	1.7e-30	66.38	Ribosomal_L2_C domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88...	[more]
A0A5D3CZ11	1.7e-30	70.64	50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Tan0005386 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00780.1	1.7e-19	71.43	ribosomal protein L14	[more]
ATCG00790.1	4.9e-14	82.50	ribosomal protein L16	[more]
AT2G28830.1	7.5e-07	57.50	PLANT U-BOX 12	[more]
ATMG00080.1	2.2e-06	52.50	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 47..104 e-value: 0.0022 score: -11.7
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 47..103 e-value: 3.0E-8 score: 33.7
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 47..104
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..43 e-value: 1.1E-12 score: 50.1
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..41
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..40 e-value: 8.7E-10 score: 38.7
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 1..40 e-value: 4.70219E-13 score: 58.2719
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 47..104 e-value: 9.9E-12 score: 46.9
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 47..103
None	No IPR available	PANTHER	PTHR11761:SF28	RIBOSOMAL PROTEIN L14B/L23E-RELATED	coord: 47..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005386.1	Tan0005386.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity