Tan0004982 (gene) Snake gourd v1

Overview


Name	Tan0004982
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 57422820 .. 57423041 (-)
RNA-Seq Expression	Tan0004982
Synteny	Tan0004982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGTGCATGGTATGTTTGGACAACAGTCTACACAGGTCCGACACAATGCCCTCAAGTATATATTCAACTCGAAGATGCTAGAGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTACACTTTAACATCGCTGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAAGTCAGCTTCATTCTGAAAACTCTTTCAGATAGTTTCCTATAG

mRNA sequence

ATGGATTCAGTGCATGGTATGTTTGGACAACAGTCTACACAGGTCCGACACAATGCCCTCAAGTATATATTCAACTCGAAGATGCTAGAGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTACACTTTAACATCGCTGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAAGTCAGCTTCATTCTGAAAACTCTTTCAGATAGTTTCCTATAG

Coding sequence (CDS)

ATGGATTCAGTGCATGGTATGTTTGGACAACAGTCTACACAGGTCCGACACAATGCCCTCAAGTATATATTCAACTCGAAGATGCTAGAGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTACACTTTAACATCGCTGAGTCGAATGGTGCTTCCATCGATGAATCGAGCCAAGTCAGCTTCATTCTGAAAACTCTTTCAGATAGTTTCCTATAG

Protein sequence

MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQVSFILKTLSDSFL

Homology

[Close]

BLAST of Tan0004982 vs. NCBI nr
Match: TYK28896.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 8.7e-20
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
          MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 8  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 67

Query: 61 VSFILKTLSDSFL 74
          VSFILK+L +SFL
Sbjct: 68 VSFILKSLPESFL 80

[Close]

BLAST of Tan0004982 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 51/73 (69.86%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNMAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++LS+SFL
Sbjct: 155 VSFILESLSESFL 167

[Close]

BLAST of Tan0004982 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004982 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 94  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 153

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 154 VSFILESLPESFL 166

[Close]

BLAST of Tan0004982 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004982 vs. ExPASy TrEMBL
Match: A0A5D3DYU3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00160 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-20
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
          MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 8  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 67

Query: 61 VSFILKTLSDSFL 74
          VSFILK+L +SFL
Sbjct: 68 VSFILKSLPESFL 80

[Close]

BLAST of Tan0004982 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.5e-20
Identity = 51/73 (69.86%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNMAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++LS+SFL
Sbjct: 155 VSFILESLSESFL 167

[Close]

BLAST of Tan0004982 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004982 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004982 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MDSVHGMFGQQSTQVRHNALKYIFNSKMLEGTSVRDHVLDMMVHFNIAESNGASIDESSQ 60
           MDS+  MFGQ S Q++H+ALKYI+N++M EG SVR+HVL+MMVHFN+AE NGA IDE+SQ
Sbjct: 212 MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 271

Query: 61  VSFILKTLSDSFL 74
           VSFIL++L +SFL
Sbjct: 272 VSFILESLPESFL 284

The following BLAST results are available for this feature:

BLAST of Tan0004982 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004982 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28896.1	8.7e-20	69.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046415.1	1.1e-19	69.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	2.5e-19	68.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.5e-19	68.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.5e-19	68.49	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYU3	4.2e-20	69.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G001...	[more]
A0A5A7TYF5	5.5e-20	69.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	1.2e-19	68.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.2e-19	68.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.2e-19	68.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of Tan0004982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..72 e-value: 5.9E-8 score: 32.6
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 2..72
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004982.1	Tan0004982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding