Tan0004481 (gene) Snake gourd v1

Overview


Name	Tan0004481
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	MADS-box transcription factor
Location	LG04: 77172841 .. 77173029 (+)
RNA-Seq Expression	Tan0004481
Synteny	Tan0004481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAAGCTGAATCTGAAACTTATTTCAAATCGGAAATCACGAATGTCGACGTTCAAGAAGAGGAAAAATAGCTTGCTGAAGAAATCTTATGAGCTGTCGACGCTTTGCGACGTTCGAATGTGCGTTCTGATCAATGGCCCTTCTTCTGATGACAAGTTTAATTTTGTTTGTGGTGCATAA

mRNA sequence

ATGGGAAGAGGAAAGCTGAATCTGAAACTTATTTCAAATCGGAAATCACGAATGTCGACGTTCAAGAAGAGGAAAAATAGCTTGCTGAAGAAATCTTATGAGCTGTCGACGCTTTGCGACGTTCGAATGTGCGTTCTGATCAATGGCCCTTCTTCTGATGACAAGTTTAATTTTGTTTGTGGTGCATAA

Coding sequence (CDS)

ATGGGAAGAGGAAAGCTGAATCTGAAACTTATTTCAAATCGGAAATCACGAATGTCGACGTTCAAGAAGAGGAAAAATAGCTTGCTGAAGAAATCTTATGAGCTGTCGACGCTTTGCGACGTTCGAATGTGCGTTCTGATCAATGGCCCTTCTTCTGATGACAAGTTTAATTTTGTTTGTGGTGCATAA

Protein sequence

MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDKFNFVCGA

Homology

[Close]

BLAST of Tan0004481 vs. ExPASy Swiss-Prot
Match: A2Y9P0 (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ SR  TF KR+N LLKK+YELS LCD  + ++I
Sbjct: 1  MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALII 47

[Close]

BLAST of Tan0004481 vs. ExPASy Swiss-Prot
Match: Q0DEB8 (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS5 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ SR  TF KR+N LLKK+YELS LCD  + ++I
Sbjct: 1  MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALII 47

[Close]

BLAST of Tan0004481 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ +R  TF KR+N LLKK+YELS LCD  + +LI
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLI 47

[Close]

BLAST of Tan0004481 vs. ExPASy Swiss-Prot
Match: A2XDY1 (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=MADS1 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ SR  TF KR+N LLKK+YELS LCD  + ++I
Sbjct: 1  MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALII 47

[Close]

BLAST of Tan0004481 vs. ExPASy Swiss-Prot
Match: Q10PZ9 (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ SR  TF KR+N LLKK+YELS LCD  + ++I
Sbjct: 1  MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALII 47

[Close]

BLAST of Tan0004481 vs. NCBI nr
Match: XP_038887059.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSS 53
          MGRGKL+L LI NRKSR+STFKKRKNSL+KK+YELSTLCDV+ CVL++GP+S
Sbjct: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPAS 52

[Close]

BLAST of Tan0004481 vs. NCBI nr
Match: XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSS 53
          MGRGKL+L LI NRKSR+STFKKRKNSL+KK+YELSTLCDV+ CVL++GP+S
Sbjct: 1  MGRGKLSLNLIPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPAS 52

[Close]

BLAST of Tan0004481 vs. NCBI nr
Match: XP_023007212.1 (MADS-box transcription factor PHERES 2-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-13
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDK 56
          MGRGKL++KLISN KSR +TF KRKNSL++K+YELSTLCDVR CV+++GPS  D+
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPSQSDQ 55

[Close]

BLAST of Tan0004481 vs. NCBI nr
Match: KAG6605325.1 (Agamous-like MADS-box protein AGL82, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035283.1 Agamous-like MADS-box protein AGL82, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 6.7e-13
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDKFNF 59
          MGRGKL++KLISN KSR +TF KRKNSL++K+YELSTLCDVR CV+++GP+  D+  F
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPNQSDQSPF 58

[Close]

BLAST of Tan0004481 vs. NCBI nr
Match: XP_022947673.1 (floral homeotic protein FBP1-like [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDK 56
          MGRGKL++KLISN KSR +TF KRKNSL++K+YELSTLCDVR CV+++GP+  D+
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPNQSDQ 55

[Close]

BLAST of Tan0004481 vs. ExPASy TrEMBL
Match: A0A6J1KY19 (MADS-box transcription factor PHERES 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499770 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDK 56
          MGRGKL++KLISN KSR +TF KRKNSL++K+YELSTLCDVR CV+++GPS  D+
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPSQSDQ 55

[Close]

BLAST of Tan0004481 vs. ExPASy TrEMBL
Match: A0A6J1G795 (floral homeotic protein FBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451466 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-13
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDK 56
          MGRGKL++KLISN KSR +TF KRKNSL++K+YELSTLCDVR CV+++GP+  D+
Sbjct: 1  MGRGKLSMKLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPNQSDQ 55

[Close]

BLAST of Tan0004481 vs. ExPASy TrEMBL
Match: A0A6J1ICD8 (agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPSSDDKFNF 59
          MGRGKL+++LI N KSR +TF KRK SLL+K+YELSTLCDVR+CVL++GP+ +D+  F
Sbjct: 1  MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRVCVLVHGPNHNDQSPF 58

[Close]

BLAST of Tan0004481 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGP 51
          M RGKL+  LI NRKSR STFK+RKNSL+KK+YELSTLCDVR CVLINGP
Sbjct: 1  MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGP 50

[Close]

BLAST of Tan0004481 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGP 51
          M RGKL+  LI NRKSR STFK+RKNSL+KK+YELSTLCDVR CVLINGP
Sbjct: 1  MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGP 50

[Close]

BLAST of Tan0004481 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ +R  TF KR+N LLKK+YELS LCD  + +LI
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLI 47

[Close]

BLAST of Tan0004481 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ +R  TF KR+N LLKK+YELS LCD  + +LI
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLI 47

[Close]

BLAST of Tan0004481 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLI 48
          MGRGK+ LK I N+ +R  TF KR+N LLKK+YELS LCD  + +LI
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLI 47

[Close]

BLAST of Tan0004481 vs. TAIR 10
Match: AT5G26580.1 (AGAMOUS-like-34 )

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-08
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGP 51
          MG  K+ L LI+N  SR ++F KRKN ++KK YELSTLC V+ C LI  P
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP 50

[Close]

BLAST of Tan0004481 vs. TAIR 10
Match: AT1G77950.1 (AGAMOUS-like 67 )

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-08
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1  MGRGKLNLKLISNRKSRMSTFKKRKNSLLKKSYELSTLCDVRMCVLINGPS 52
          MGR KL LK I    +R  TF KRK  L+KK+YELSTLCD+ + +L+  PS
Sbjct: 1  MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPS 51

The following BLAST results are available for this feature:

BLAST of Tan0004481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y9P0	2.6e-07	59.57	MADS-box transcription factor 5 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5 ...	[more]
Q0DEB8	2.6e-07	59.57	MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
P29383	3.3e-07	59.57	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
A2XDY1	3.3e-07	59.57	MADS-box transcription factor 1 OS=Oryza sativa subsp. indica OX=39946 GN=MADS1 ...	[more]
Q10PZ9	3.3e-07	59.57	MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]

BLAST of Tan0004481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887059.1	3.9e-13	78.85	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_038887053.1	3.9e-13	78.85	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_023007212.1	5.1e-13	70.91	MADS-box transcription factor PHERES 2-like [Cucurbita maxima]	[more]
KAG6605325.1	6.7e-13	67.24	Agamous-like MADS-box protein AGL82, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022947673.1	1.1e-12	69.09	floral homeotic protein FBP1-like [Cucurbita moschata]	[more]

BLAST of Tan0004481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY19	2.5e-13	70.91	MADS-box transcription factor PHERES 2-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1G795	5.5e-13	69.09	floral homeotic protein FBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111451466 ...	[more]
A0A6J1ICD8	4.7e-12	65.52	agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387...	[more]
A0A6J1J5U6	1.0e-11	80.00	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1F4C8	1.0e-11	80.00	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]

BLAST of Tan0004481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03710.1	2.4e-08	59.57	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	2.4e-08	59.57	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	2.4e-08	59.57	K-box region and MADS-box transcription factor family protein	[more]
AT5G26580.1	5.3e-08	56.00	AGAMOUS-like-34	[more]
AT1G77950.1	6.9e-08	54.90	AGAMOUS-like 67	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 43.97 coord: 23..38 score: 65.31
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..62 e-value: 6.2E-16 score: 68.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..51 e-value: 2.9E-17 score: 61.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 19.104929
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..60 e-value: 2.2E-14 score: 55.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..53
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..51
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..51
None	No IPR available	CDD	cd00120	MADS	coord: 2..51 e-value: 3.58098E-19 score: 70.6206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004481.1	Tan0004481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding